Wall clock time and date at job start Mon Mar 30 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47239 * 2 1 4 4 C 1.46506 * 120.00244 * 264.87916 * 3 2 1 5 5 C 1.50699 * 109.47139 * 270.00300 * 4 3 2 6 6 H 1.07998 * 119.99893 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00016 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99765 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00206 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46994 * 90.00315 * 9 7 5 11 11 H 1.48502 * 109.47315 * 210.00256 * 9 7 5 12 12 H 1.48499 * 109.47188 * 330.00091 * 9 7 5 13 13 C 1.34775 * 120.00139 * 84.88374 * 3 2 1 14 14 O 1.21550 * 120.00532 * 185.39966 * 13 3 2 15 15 C 1.47869 * 119.99641 * 5.67047 * 13 3 2 16 16 C 1.39701 * 120.07186 * 55.02686 * 15 13 3 17 17 C 1.38061 * 120.15490 * 179.76505 * 16 15 13 18 18 C 1.38078 * 120.30574 * 0.51131 * 17 16 15 19 19 C 1.39715 * 120.14161 * 359.74258 * 18 17 16 20 20 C 1.43198 * 120.07917 * 180.02562 * 19 18 17 21 21 N 7.03760 * 69.38491 * 71.36850 * 2 1 3 22 22 C 1.39291 * 120.07009 * 235.30219 * 15 13 3 23 23 C 1.50700 * 120.14902 * 359.95669 * 22 15 13 24 24 H 1.08998 * 109.47003 * 59.99611 * 1 2 3 25 25 H 1.09004 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46509 * 299.99985 * 1 2 3 27 27 H 1.09007 * 109.46971 * 239.99875 * 2 1 3 28 28 H 1.09003 * 109.47450 * 120.00503 * 2 1 3 29 29 H 1.09001 * 109.46977 * 29.99999 * 4 3 2 30 30 H 1.08991 * 109.47160 * 149.99883 * 4 3 2 31 31 H 0.97006 * 120.00228 * 179.97438 * 8 7 5 32 32 H 1.08002 * 119.91712 * 0.02562 * 16 15 13 33 33 H 1.08005 * 119.84208 * 180.25850 * 17 16 15 34 34 H 1.08006 * 119.92793 * 179.71983 * 18 17 16 35 35 H 1.09001 * 109.47421 * 94.93808 * 23 22 15 36 36 H 1.09003 * 109.47209 * 214.94145 * 23 22 15 37 37 H 1.09005 * 109.47093 * 334.94099 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3693 2.0341 -1.2637 5 6 3.8238 1.7862 -1.5702 6 1 4.4264 1.2005 -0.8918 7 6 4.3850 2.3062 -2.7172 8 7 3.6511 3.0190 -3.5435 9 14 6.1881 1.9995 -3.0968 10 1 6.3211 0.7538 -3.8941 11 1 6.7324 3.1436 -3.8716 12 1 6.9442 1.8575 -1.8267 13 6 2.1449 2.0512 1.1625 14 8 2.4555 3.2264 1.1561 15 6 1.9116 1.3552 2.4461 16 6 2.6211 0.1908 2.7500 17 6 2.4082 -0.4578 3.9501 18 6 1.4862 0.0328 4.8533 19 6 0.7658 1.1935 4.5600 20 6 -0.1896 1.7015 5.4978 21 7 -0.9479 2.1044 6.2418 22 6 0.9799 1.8560 3.3524 23 6 0.2071 3.1087 3.0290 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7544 1.6267 -2.0662 30 1 2.1933 3.1064 -1.1797 31 1 4.0459 3.3852 -4.3504 32 1 3.3408 -0.2006 2.0463 33 1 2.9625 -1.3554 4.1817 34 1 1.3212 -0.4819 5.7883 35 1 -0.7530 2.8399 2.5885 36 1 0.0407 3.6791 3.9428 37 1 0.7748 3.7134 2.3216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338120686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:42 Heat of formation + Delta-G solvation = -1.901355 kcal Electronic energy + Delta-G solvation = -20513.998845 eV Core-core repulsion = 17448.639674 eV Total energy + Delta-G solvation = -3065.359171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56838 -39.66979 -37.47085 -37.03006 -34.89928 -33.88022 -32.63378 -31.56762 -29.26602 -28.16955 -25.64705 -24.97394 -24.07851 -22.91688 -20.67377 -19.29417 -18.54365 -17.52827 -17.20674 -17.04850 -16.85802 -16.26916 -15.51428 -15.40963 -14.93372 -14.62382 -14.47431 -14.30201 -14.15687 -14.09683 -13.83765 -13.64529 -13.40389 -13.18987 -13.10208 -12.86934 -12.73040 -12.58603 -12.45258 -12.31305 -12.15168 -11.80700 -11.68675 -10.67784 -10.61605 -9.97107 -9.77503 -9.41670 -8.19797 -6.34789 -0.31808 0.07334 1.40186 1.43224 1.53079 1.54381 1.68089 1.98712 2.27482 2.45425 2.79278 2.83673 3.10546 3.54986 3.66578 3.91792 4.05247 4.19500 4.35802 4.45304 4.51978 4.57046 4.59000 4.67466 4.69914 4.95238 4.98432 5.05971 5.08909 5.23206 5.25422 5.33256 5.35866 5.39169 5.59861 5.75847 5.86493 6.07598 6.39269 6.70195 6.77235 7.27566 7.43038 8.87466 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.004769 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.698065 B = 5869.868588 C = 5994.681646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.260 3.740 5 C -0.542 4.542 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.547 3.453 14 O -0.587 6.587 15 C -0.134 4.134 16 C -0.056 4.056 17 C -0.107 4.107 18 C -0.032 4.032 19 C -0.045 4.045 20 C 0.283 3.717 21 N -0.457 5.457 22 C -0.002 4.002 23 C -0.139 4.139 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.023 0.977 30 H -0.002 1.002 31 H 0.266 0.734 32 H 0.144 0.856 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -13.281 14.088 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.029 4.029 3 N -0.321 5.321 4 C 0.139 3.861 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.336 3.664 14 O -0.469 6.469 15 C -0.137 4.137 16 C -0.075 4.075 17 C -0.125 4.125 18 C -0.053 4.053 19 C -0.049 4.049 20 C -0.032 4.032 21 N -0.133 5.133 22 C -0.005 4.005 23 C -0.195 4.195 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.201 0.799 34 H 0.190 0.810 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.026 -11.968 15.027 19.856 hybrid contribution 0.995 0.654 -1.248 1.725 sum -4.031 -11.314 13.779 18.279 Atomic orbital electron populations 1.22143 0.94970 1.03499 1.01279 1.21947 0.95103 0.81419 1.04417 1.48212 1.62350 1.15076 1.06471 1.18778 0.94893 0.92137 0.80272 1.21720 0.96184 1.33486 1.06642 0.92177 1.25864 1.02945 0.94452 0.95864 1.70063 1.38279 1.35617 1.12996 0.85406 0.78949 0.78106 0.78309 1.18786 1.21102 1.19367 1.18788 0.76891 0.86005 0.84729 1.90709 1.50219 1.18166 1.87822 1.19601 1.01274 0.98463 0.94337 1.21732 0.96408 0.91195 0.98214 1.21418 0.98099 1.01450 0.91494 1.21704 0.91690 0.91419 1.00449 1.15759 0.98641 0.99217 0.91243 1.25640 0.92524 0.92565 0.92446 1.81267 1.11358 1.09263 1.11368 1.19767 0.94012 0.95095 0.91647 1.21069 1.00341 0.95074 1.03050 0.94190 0.88513 0.92980 0.90230 0.87798 0.95897 0.98394 0.92488 0.83822 0.79929 0.80975 0.89660 0.90781 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.20 71.98 0.73 -3.23 16 2 C 0.09 2.70 5.90 86.38 0.51 3.21 16 3 N -0.59 -24.25 2.47 -829.54 -2.05 -26.29 16 4 C 0.26 13.74 5.18 85.63 0.44 14.18 16 5 C -0.54 -30.16 9.39 25.60 0.24 -29.92 16 6 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 9 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.55 22.42 6.43 86.79 0.56 22.98 16 14 O -0.59 -30.14 14.71 -3.87 -0.06 -30.20 16 15 C -0.13 -3.86 4.87 -20.12 -0.10 -3.96 16 16 C -0.06 -1.14 7.59 22.58 0.17 -0.97 16 17 C -0.11 -1.24 10.01 22.19 0.22 -1.02 16 18 C -0.03 -0.40 9.75 22.59 0.22 -0.18 16 19 C -0.05 -0.89 5.73 -21.40 -0.12 -1.02 16 20 C 0.28 6.38 13.88 88.33 1.23 7.60 16 21 N -0.46 -12.18 18.54 19.00 0.35 -11.83 16 22 C 0.00 -0.05 5.95 -19.33 -0.11 -0.16 16 23 C -0.14 -4.02 9.20 71.24 0.66 -3.36 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.05 1.27 8.06 -2.39 -0.02 1.26 16 27 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 28 H 0.10 2.31 4.53 -2.39 -0.01 2.30 16 29 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 30 H 0.00 -0.13 7.35 -2.39 -0.02 -0.15 16 31 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 32 H 0.14 2.79 7.37 -2.91 -0.02 2.77 16 33 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 1.97 7.28 -2.39 -0.02 1.95 16 37 H 0.07 2.46 5.58 -2.38 -0.01 2.44 16 Total: -1.00 -75.10 322.33 6.75 -68.35 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.08 Total: 4.54 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.11 Total: 5.06 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.41 Total: -93.37 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.20 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.10 6.75 -68.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338120686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.448 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds