Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47505 * 304.99524 * 3 2 1 5 5 C 1.50703 * 109.47196 * 184.99687 * 3 2 1 6 6 H 1.08003 * 120.00392 * 240.00535 * 5 3 2 7 7 C 1.37881 * 119.99775 * 59.99929 * 5 3 2 8 8 N 1.31512 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46936 * 60.00146 * 9 7 5 11 11 H 1.48495 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46992 * 299.99897 * 9 7 5 13 13 N 1.46503 * 109.47188 * 65.00340 * 3 2 1 14 14 C 1.34778 * 119.99348 * 274.99774 * 13 3 2 15 15 O 1.21551 * 120.00327 * 359.97438 * 14 13 3 16 16 C 1.47867 * 119.99967 * 180.02562 * 14 13 3 17 17 C 1.39701 * 120.06853 * 353.76593 * 16 14 13 18 18 C 1.38062 * 120.15950 * 179.97438 * 17 16 14 19 19 C 1.38088 * 120.30573 * 359.97163 * 18 17 16 20 20 C 1.39722 * 120.13617 * 0.02562 * 19 18 17 21 21 C 1.43197 * 120.07761 * 179.97438 * 20 19 18 22 22 N 8.91500 * 53.82159 * 34.40226 * 2 1 3 23 23 C 1.39290 * 120.07487 * 173.48808 * 16 14 13 24 24 C 1.50702 * 120.14764 * 0.02562 * 23 16 14 25 25 H 1.09005 * 109.46990 * 59.99797 * 1 2 3 26 26 H 1.08999 * 109.47465 * 299.99998 * 1 2 3 27 27 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46990 * 120.00202 * 2 1 3 29 29 H 1.09000 * 109.47029 * 239.99703 * 2 1 3 30 30 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00313 * 94.99620 * 13 3 2 32 32 H 1.08003 * 119.92293 * 359.95022 * 17 16 14 33 33 H 1.07994 * 119.84830 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.93446 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47039 * 83.41433 * 24 23 16 36 36 H 1.08997 * 109.46787 * 203.41581 * 24 23 16 37 37 H 1.09000 * 109.47150 * 323.41696 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8799 -1.3810 10 1 6.5966 0.1452 -0.2341 11 1 6.3979 0.2167 -2.6502 12 1 6.5005 2.2799 -1.3807 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3669 15 8 -0.3410 2.6326 0.4320 16 6 0.0441 3.3259 2.6302 17 6 0.8803 3.2523 3.7469 18 6 0.5173 3.8698 4.9272 19 6 -0.6731 4.5644 5.0127 20 6 -1.5189 4.6462 3.9036 21 6 -2.7533 5.3664 3.9939 22 7 -3.7325 5.9374 4.0658 23 6 -1.1560 4.0288 2.7077 24 6 -2.0603 4.1172 1.5054 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8294 -0.0611 -2.9498 31 1 2.2719 2.1231 1.9978 32 1 1.8128 2.7107 3.6869 33 1 1.1677 3.8100 5.7872 34 1 -0.9510 5.0455 5.9389 35 1 -2.6810 3.2229 1.4511 36 1 -2.6975 4.9971 1.5940 37 1 -1.4563 4.1956 0.6014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338128338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = 10.594679 kcal Electronic energy + Delta-G solvation = -20313.478877 eV Core-core repulsion = 17248.661574 eV Total energy + Delta-G solvation = -3064.817303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30860 -38.43942 -36.46556 -35.25042 -33.03120 -32.42091 -31.72539 -30.54681 -27.58413 -26.69806 -24.31550 -23.32209 -22.22561 -20.57072 -19.61347 -18.73175 -16.90802 -16.14692 -16.03936 -15.43300 -15.26131 -14.83437 -14.45833 -14.12880 -13.82829 -13.24567 -13.15658 -12.96185 -12.86067 -12.72307 -12.16711 -12.11994 -11.89403 -11.86630 -11.54370 -11.31031 -11.26451 -11.01300 -10.85507 -10.35077 -10.22651 -9.66423 -9.13821 -9.09301 -8.99583 -8.87579 -8.54641 -7.88668 -6.16796 -4.26750 0.53286 0.95401 2.53550 2.64842 3.22527 3.28628 3.28933 3.42222 3.67167 3.96913 4.00118 4.32276 4.61418 4.69735 4.85638 5.03271 5.14798 5.29010 5.48728 5.58392 5.74252 5.89932 6.01607 6.12486 6.19004 6.35686 6.41868 6.46270 6.59455 6.67565 7.00026 7.15092 7.30231 7.35370 7.36977 7.56456 7.66920 7.84357 8.12828 8.55931 8.70775 9.00841 9.40579 10.88373 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.004449 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.423240 B = 6291.861166 C = 6807.133571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.535 6.535 16 C -0.128 4.128 17 C -0.054 4.054 18 C -0.136 4.136 19 C -0.051 4.051 20 C -0.050 4.050 21 C 0.264 3.736 22 N -0.424 5.424 23 C 0.023 3.977 24 C -0.128 4.128 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 4.540 12.744 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.132 4.132 17 C -0.073 4.073 18 C -0.154 4.154 19 C -0.072 4.072 20 C -0.054 4.054 21 C -0.051 4.051 22 N -0.100 5.100 23 C 0.019 3.981 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.690 5.277 11.949 14.248 hybrid contribution 1.759 -0.296 0.363 1.820 sum -3.932 4.982 12.312 13.851 Atomic orbital electron populations 1.21849 0.98291 0.98138 1.01258 1.21941 0.92657 0.99687 1.02366 1.18833 0.94278 0.89217 0.80718 0.93044 1.21178 0.90627 1.39347 1.06410 0.92112 1.24871 0.98592 0.94728 0.95347 1.69875 1.35268 1.37361 1.09313 0.86521 0.84836 0.78339 0.77491 1.20145 1.21136 1.20168 1.46479 1.14219 1.55278 1.18696 1.18008 0.83144 0.79590 0.86554 1.90708 1.51209 1.59421 1.40141 1.20124 0.95437 1.01858 0.95739 1.21669 0.98440 0.95352 0.91863 1.20994 0.96920 0.99104 0.98396 1.21266 0.93000 0.96082 0.96845 1.15845 0.90639 1.03340 0.95559 1.25544 0.92813 0.93252 0.93447 1.81229 1.11040 1.09969 1.07747 1.20078 0.93394 0.90849 0.93768 1.21219 0.98627 1.01647 0.96929 0.93074 0.94229 0.95851 0.94996 0.88228 0.92447 0.77913 0.84529 0.84479 0.84873 0.89820 0.93014 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.14 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.17 4.97 -55.87 -0.28 -13.44 16 14 C 0.54 9.73 6.27 -12.32 -0.08 9.65 16 15 O -0.53 -11.04 10.48 5.32 0.06 -10.99 16 16 C -0.13 -1.79 5.87 -105.02 -0.62 -2.40 16 17 C -0.05 -0.57 9.52 -39.10 -0.37 -0.94 16 18 C -0.14 -1.13 10.02 -39.70 -0.40 -1.53 16 19 C -0.05 -0.45 9.75 -39.08 -0.38 -0.83 16 20 C -0.05 -0.57 5.73 -106.99 -0.61 -1.18 16 21 C 0.26 3.31 13.69 -22.48 -0.31 3.00 16 22 N -0.42 -6.06 18.54 41.83 0.78 -5.28 16 23 C 0.02 0.30 5.95 -103.80 -0.62 -0.31 16 24 C -0.13 -1.80 8.41 36.01 0.30 -1.50 16 25 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 26 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 6.19 6.60 -40.82 -0.27 5.92 16 32 H 0.14 1.25 6.44 -52.48 -0.34 0.91 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.67 6.87 -51.93 -0.36 0.31 16 37 H 0.11 1.79 5.86 -51.93 -0.30 1.48 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -28.65 310.92 -6.94 -35.60 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.33 Total: 5.35 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.46 Total: -7.57 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.12 Total: -41.87 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.65 -6.94 -35.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338128338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.190 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds