Wall clock time and date at job start Mon Mar 30 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47505 * 304.99524 * 3 2 1 5 5 C 1.50703 * 109.47196 * 184.99687 * 3 2 1 6 6 H 1.08003 * 120.00392 * 240.00535 * 5 3 2 7 7 C 1.37881 * 119.99775 * 59.99929 * 5 3 2 8 8 N 1.31512 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46936 * 60.00146 * 9 7 5 11 11 H 1.48495 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46992 * 299.99897 * 9 7 5 13 13 N 1.46503 * 109.47188 * 65.00340 * 3 2 1 14 14 C 1.34778 * 119.99348 * 274.99774 * 13 3 2 15 15 O 1.21551 * 120.00327 * 359.97438 * 14 13 3 16 16 C 1.47867 * 119.99967 * 180.02562 * 14 13 3 17 17 C 1.39701 * 120.06853 * 353.76593 * 16 14 13 18 18 C 1.38062 * 120.15950 * 179.97438 * 17 16 14 19 19 C 1.38088 * 120.30573 * 359.97163 * 18 17 16 20 20 C 1.39722 * 120.13617 * 0.02562 * 19 18 17 21 21 C 1.43197 * 120.07761 * 179.97438 * 20 19 18 22 22 N 8.91500 * 53.82159 * 34.40226 * 2 1 3 23 23 C 1.39290 * 120.07487 * 173.48808 * 16 14 13 24 24 C 1.50702 * 120.14764 * 0.02562 * 23 16 14 25 25 H 1.09005 * 109.46990 * 59.99797 * 1 2 3 26 26 H 1.08999 * 109.47465 * 299.99998 * 1 2 3 27 27 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46990 * 120.00202 * 2 1 3 29 29 H 1.09000 * 109.47029 * 239.99703 * 2 1 3 30 30 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00313 * 94.99620 * 13 3 2 32 32 H 1.08003 * 119.92293 * 359.95022 * 17 16 14 33 33 H 1.07994 * 119.84830 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.93446 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47039 * 83.41433 * 24 23 16 36 36 H 1.08997 * 109.46787 * 203.41581 * 24 23 16 37 37 H 1.09000 * 109.47150 * 323.41696 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8799 -1.3810 10 1 6.5966 0.1452 -0.2341 11 1 6.3979 0.2167 -2.6502 12 1 6.5005 2.2799 -1.3807 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3669 15 8 -0.3410 2.6326 0.4320 16 6 0.0441 3.3259 2.6302 17 6 0.8803 3.2523 3.7469 18 6 0.5173 3.8698 4.9272 19 6 -0.6731 4.5644 5.0127 20 6 -1.5189 4.6462 3.9036 21 6 -2.7533 5.3664 3.9939 22 7 -3.7325 5.9374 4.0658 23 6 -1.1560 4.0288 2.7077 24 6 -2.0603 4.1172 1.5054 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8294 -0.0611 -2.9498 31 1 2.2719 2.1231 1.9978 32 1 1.8128 2.7107 3.6869 33 1 1.1677 3.8100 5.7872 34 1 -0.9510 5.0455 5.9389 35 1 -2.6810 3.2229 1.4511 36 1 -2.6975 4.9971 1.5940 37 1 -1.4563 4.1956 0.6014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338128338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:50 Heat of formation + Delta-G solvation = -6.000129 kcal Electronic energy + Delta-G solvation = -20314.198481 eV Core-core repulsion = 17248.661574 eV Total energy + Delta-G solvation = -3065.536908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44934 -39.70261 -37.50140 -36.92834 -34.50568 -33.59828 -33.21109 -31.92216 -29.08868 -28.07387 -25.39806 -24.92215 -23.52811 -21.80946 -21.29173 -19.95586 -18.46494 -17.35917 -17.25581 -16.74252 -16.55243 -16.28999 -15.92499 -15.33638 -15.06862 -14.54654 -14.46661 -14.13404 -14.08280 -13.91805 -13.66455 -13.41929 -13.26201 -13.11639 -12.89423 -12.81644 -12.73889 -12.59939 -12.21902 -12.12441 -12.01103 -11.51948 -11.01153 -10.52120 -10.40272 -10.03826 -9.81335 -9.49726 -8.11771 -6.28780 -0.33704 0.02064 1.49008 1.50253 1.55075 1.57831 1.70036 2.26877 2.38145 2.59517 2.87028 2.92208 3.18368 3.72365 3.80937 3.98367 4.07951 4.40272 4.54540 4.61783 4.62696 4.64624 4.72050 4.76331 4.82204 5.12261 5.15632 5.24897 5.32208 5.34067 5.42655 5.48790 5.62009 5.68624 5.76594 5.85686 5.98443 6.21975 6.39021 6.79280 7.02623 7.38108 7.60935 8.93131 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.004449 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.423240 B = 6291.861166 C = 6807.133571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.698 5.698 14 C 0.538 3.462 15 O -0.571 6.571 16 C -0.150 4.150 17 C -0.047 4.047 18 C -0.117 4.117 19 C -0.028 4.028 20 C -0.056 4.056 21 C 0.282 3.718 22 N -0.460 5.460 23 C 0.010 3.990 24 C -0.122 4.122 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 5.003 16.393 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.453 6.453 16 C -0.153 4.153 17 C -0.066 4.066 18 C -0.135 4.135 19 C -0.049 4.049 20 C -0.060 4.060 21 C -0.032 4.032 22 N -0.136 5.136 23 C 0.007 3.993 24 C -0.178 4.178 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.171 0.829 33 H 0.199 0.801 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.185 5.756 15.644 17.186 hybrid contribution 1.256 -0.394 -0.715 1.498 sum -2.929 5.362 14.929 16.130 Atomic orbital electron populations 1.21684 0.97038 0.99023 1.00355 1.21785 0.93678 0.99191 1.01325 1.18364 0.93584 0.89119 0.81275 0.98164 1.21568 0.91459 1.38851 1.06700 0.90761 1.25733 1.03050 0.94464 0.95099 1.70041 1.37055 1.38378 1.09853 0.85472 0.79440 0.78398 0.77475 1.18763 1.21611 1.19717 1.46165 1.15207 1.55628 1.17682 1.18648 0.82182 0.78815 0.87750 1.90701 1.52095 1.60517 1.41988 1.19736 0.96947 1.03752 0.94894 1.21923 0.98221 0.94995 0.91458 1.21453 0.96791 0.96756 0.98469 1.21742 0.91958 0.94288 0.96872 1.15858 0.90767 1.03568 0.95793 1.25679 0.92606 0.92472 0.92429 1.81252 1.12069 1.11342 1.08895 1.19959 0.93293 0.91974 0.94113 1.21042 0.98495 1.01503 0.96762 0.95517 0.93562 0.93905 0.93902 0.91152 0.92722 0.76060 0.82922 0.80052 0.81246 0.90685 0.92434 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.58 2.24 44.24 0.10 13.68 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -27.49 8.73 25.60 0.22 -27.26 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.91 -50.96 11.29 21.45 0.24 -50.72 16 9 Si 0.97 40.50 29.54 68.60 2.03 42.52 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 N -0.70 -26.35 4.97 -448.96 -2.23 -28.59 16 14 C 0.54 19.68 6.27 86.79 0.54 20.23 16 15 O -0.57 -24.96 10.48 -3.88 -0.04 -25.01 16 16 C -0.15 -4.01 5.87 -20.12 -0.12 -4.12 16 17 C -0.05 -0.82 9.52 22.58 0.21 -0.61 16 18 C -0.12 -1.27 10.02 22.19 0.22 -1.05 16 19 C -0.03 -0.35 9.75 22.59 0.22 -0.13 16 20 C -0.06 -1.14 5.73 -21.40 -0.12 -1.26 16 21 C 0.28 6.60 13.69 88.33 1.21 7.81 16 22 N -0.46 -12.67 18.54 19.00 0.35 -12.32 16 23 C 0.01 0.27 5.95 -19.33 -0.12 0.15 16 24 C -0.12 -3.59 8.41 71.24 0.60 -2.99 16 25 H 0.03 1.25 7.84 -2.38 -0.02 1.23 16 26 H 0.05 1.91 5.65 -2.39 -0.01 1.90 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.40 12.33 6.60 -92.71 -0.61 11.72 16 32 H 0.15 2.17 6.44 -2.91 -0.02 2.15 16 33 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 1.55 6.87 -2.39 -0.02 1.54 16 37 H 0.08 2.92 5.86 -2.39 -0.01 2.90 16 Total: -1.00 -66.25 310.92 5.05 -61.20 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.50 Total: 17.42 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.20 Total: -4.51 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.64 Total: -91.62 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.25 5.05 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338128338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.201 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds