Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 N 1.46499 * 109.47087 * 180.02562 * 3 2 1 5 5 C 1.36812 * 119.99834 * 262.65792 * 4 3 2 6 6 H 1.07994 * 119.99980 * 35.51100 * 5 4 3 7 7 C 1.39062 * 119.99789 * 215.50625 * 5 4 3 8 8 N 1.31364 * 119.99994 * 18.09608 * 7 5 4 9 9 Si 1.86800 * 120.00040 * 198.09362 * 7 5 4 10 10 H 1.48499 * 109.47041 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47108 * 120.00116 * 9 7 5 12 12 H 1.48500 * 109.47066 * 240.00473 * 9 7 5 13 13 C 1.34779 * 119.99961 * 82.66114 * 4 3 2 14 14 O 1.21696 * 119.99712 * 181.42489 * 13 4 3 15 15 C 1.46897 * 119.99886 * 1.42406 * 13 4 3 16 16 C 1.36014 * 125.43989 * 169.22277 * 15 13 4 17 17 C 1.41542 * 107.72038 * 179.97438 * 16 15 13 18 18 C 1.40130 * 133.35518 * 179.97438 * 17 16 15 19 19 C 1.36443 * 119.82503 * 180.02562 * 18 17 16 20 20 C 1.38938 * 120.61012 * 359.94021 * 19 18 17 21 21 C 1.37698 * 120.65513 * 0.09570 * 20 19 18 22 22 C 1.39200 * 119.81268 * 359.93314 * 21 20 19 23 23 N 1.37528 * 133.16900 * 179.97438 * 22 21 20 24 24 H 0.97003 * 125.60882 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47233 * 299.99793 * 1 2 3 27 27 H 1.09000 * 109.47807 * 59.99805 * 1 2 3 28 28 H 1.08999 * 109.47233 * 240.00207 * 2 1 3 29 29 H 1.08998 * 109.47592 * 119.99694 * 2 1 3 30 30 H 1.08999 * 109.46972 * 60.00047 * 3 2 1 31 31 H 1.08998 * 109.46712 * 300.00233 * 3 2 1 32 32 H 0.96999 * 119.99576 * 184.92273 * 8 7 5 33 33 H 1.08001 * 126.13782 * 359.95920 * 16 15 13 34 34 H 1.07993 * 120.08972 * 0.07183 * 18 17 16 35 35 H 1.07996 * 119.69451 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.67080 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.09110 * 180.21559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1894 1.5938 1.1742 6 1 3.8005 1.1633 2.0851 7 6 5.3861 2.3019 1.1955 8 7 5.6861 3.1146 0.2079 9 14 6.5670 2.0975 2.6284 10 1 5.9994 1.1322 3.6037 11 1 7.8691 1.5886 2.1279 12 1 6.7707 3.4098 3.2930 13 6 4.1783 1.2937 -1.1586 14 8 5.3950 1.2677 -1.1559 15 6 3.4436 1.1627 -2.4239 16 6 3.9959 1.2154 -3.6657 17 6 2.9536 1.0468 -4.6083 18 6 2.9192 1.0128 -6.0088 19 6 1.7311 0.8301 -6.6542 20 6 0.5520 0.6757 -5.9356 21 6 0.5598 0.7061 -4.5590 22 6 1.7593 0.8918 -3.8776 23 7 2.0813 0.9666 -2.5426 24 1 1.4548 0.8937 -1.8056 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9563 -0.8900 32 1 6.5508 3.5536 0.1868 33 1 5.0420 1.3601 -3.8919 34 1 3.8308 1.1302 -6.5758 35 1 1.7071 0.8039 -7.7336 36 1 -0.3799 0.5316 -6.4620 37 1 -0.3616 0.5817 -4.0094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345501892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = 42.396972 kcal Electronic energy + Delta-G solvation = -21049.469708 eV Core-core repulsion = 17986.031456 eV Total energy + Delta-G solvation = -3063.438252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64129 -40.15210 -37.69421 -37.09452 -34.74318 -33.19057 -32.84103 -30.47381 -29.74783 -27.73130 -26.64611 -24.37479 -22.96127 -22.67205 -21.99229 -21.14571 -19.24111 -18.48123 -17.90022 -17.02521 -16.40675 -16.07165 -15.91515 -15.73893 -15.38144 -14.98866 -14.62985 -14.58403 -14.20542 -13.97010 -13.71561 -13.58993 -13.12424 -12.93100 -12.83076 -12.65225 -12.54106 -12.39579 -12.31110 -12.05882 -11.76591 -11.68174 -11.04540 -10.76524 -10.33968 -9.28297 -9.09739 -8.66780 -8.23046 -6.05451 -0.01462 0.77124 1.34324 1.40339 1.46000 1.53651 2.10924 2.30799 2.75255 2.98819 3.05547 3.21500 3.74582 3.84111 3.85570 4.03922 4.20352 4.27431 4.30528 4.40517 4.48408 4.56712 4.57627 4.70409 4.85161 4.94728 5.02998 5.03511 5.12362 5.20637 5.35166 5.37815 5.60184 5.68233 5.76506 5.80965 6.06095 6.24335 6.56032 6.84874 7.07309 7.48273 8.17345 8.79745 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.005970 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.566690 B = 4688.650615 C = 5655.184074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.080 3.920 4 N -0.454 5.454 5 C -0.357 4.357 6 H 0.099 0.901 7 C 0.003 3.997 8 N -0.849 5.849 9 Si 0.979 3.021 10 H -0.251 1.251 11 H -0.294 1.294 12 H -0.274 1.274 13 C 0.496 3.504 14 O -0.561 6.561 15 C 0.039 3.961 16 C -0.167 4.167 17 C -0.135 4.135 18 C -0.084 4.084 19 C -0.145 4.145 20 C -0.091 4.091 21 C -0.136 4.136 22 C 0.076 3.924 23 N -0.581 5.581 24 H 0.432 0.568 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -5.068 -8.129 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C -0.044 4.044 4 N -0.173 5.173 5 C -0.484 4.484 6 H 0.116 0.884 7 C -0.204 4.204 8 N -0.484 5.484 9 Si 0.803 3.197 10 H -0.175 1.175 11 H -0.221 1.221 12 H -0.200 1.200 13 C 0.285 3.715 14 O -0.441 6.441 15 C -0.073 4.073 16 C -0.195 4.195 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.164 4.164 20 C -0.110 4.110 21 C -0.156 4.156 22 C -0.033 4.033 23 N -0.198 5.198 24 H 0.284 0.716 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.148 -4.906 -7.920 16.940 hybrid contribution 1.172 0.245 1.068 1.605 sum -12.976 -4.661 -6.852 15.396 Atomic orbital electron populations 1.21775 0.91798 1.03665 1.03121 1.22196 0.98574 0.95832 1.02632 1.22246 0.81785 0.97649 1.02720 1.43470 1.04652 1.63070 1.06095 1.19597 1.07562 1.33506 0.87781 0.88376 1.26144 1.00988 0.93318 0.99943 1.70074 1.21348 1.23465 1.33557 0.85122 0.77972 0.78332 0.78282 1.17474 1.22106 1.20007 1.17351 0.86838 0.84473 0.82874 1.90612 1.14511 1.53050 1.85901 1.20642 0.83550 1.07371 0.95691 1.20826 0.99113 1.08928 0.90592 1.18460 0.92341 1.08317 0.94786 1.20652 0.99890 0.98992 0.90752 1.20991 0.91647 1.02513 1.01251 1.21294 0.99545 0.97921 0.92247 1.20430 0.94319 1.05798 0.95092 1.18953 0.96607 1.04189 0.83574 1.43665 1.06763 1.62138 1.07236 0.71572 0.90347 0.90665 0.91956 0.92997 0.91055 0.88984 0.91727 0.92989 0.85208 0.85142 0.82892 0.81911 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.76 71.98 0.70 -2.23 16 2 C -0.15 -4.68 5.19 30.59 0.16 -4.52 16 3 C 0.08 3.04 4.91 86.38 0.42 3.46 16 4 N -0.45 -23.42 2.58 -639.84 -1.65 -25.07 16 5 C -0.36 -19.76 9.33 84.11 0.78 -18.97 16 6 H 0.10 5.01 7.90 -2.91 -0.02 4.99 16 7 C 0.00 0.20 4.42 84.96 0.38 0.57 16 8 N -0.85 -53.10 10.89 21.68 0.24 -52.86 16 9 Si 0.98 45.43 29.59 68.60 2.03 47.46 16 10 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.50 27.80 6.86 86.51 0.59 28.39 16 14 O -0.56 -36.42 13.80 -4.33 -0.06 -36.48 16 15 C 0.04 1.82 6.41 39.90 0.26 2.07 16 16 C -0.17 -7.52 10.55 22.57 0.24 -7.28 16 17 C -0.13 -4.95 6.16 -21.36 -0.13 -5.08 16 18 C -0.08 -2.41 10.06 22.31 0.22 -2.18 16 19 C -0.15 -3.12 9.97 22.02 0.22 -2.90 16 20 C -0.09 -1.79 10.02 22.31 0.22 -1.57 16 21 C -0.14 -3.30 10.08 22.37 0.23 -3.07 16 22 C 0.08 2.56 7.25 39.12 0.28 2.84 16 23 N -0.58 -21.60 4.20 -177.20 -0.74 -22.35 16 24 H 0.43 13.93 2.51 -92.71 -0.23 13.69 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.09 7.45 -2.39 -0.02 1.08 16 28 H 0.05 1.73 6.37 -2.39 -0.02 1.72 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 3.29 7.98 -2.39 -0.02 3.27 16 31 H 0.07 2.38 5.17 -2.39 -0.01 2.37 16 32 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.13 6.02 8.06 -2.91 -0.02 5.99 16 34 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -77.11 303.76 5.24 -71.86 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.85 Total: 27.89 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.58 Total: -10.47 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -2.16 Total: -100.28 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.06 Total: -36.48 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.11 5.24 -71.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345501892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.262 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds