Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47512 * 2 1 4 4 N 1.46903 * 109.46657 * 240.00286 * 2 1 3 5 5 C 1.46895 * 111.00026 * 85.00615 * 4 2 1 6 6 C 1.50701 * 109.47181 * 179.97438 * 5 4 2 7 7 C 1.38631 * 119.75383 * 269.72663 * 6 5 4 8 8 C 1.37618 * 120.25255 * 179.71943 * 7 6 5 9 9 C 1.40710 * 119.74139 * 0.57105 * 8 7 6 10 10 C 1.41398 * 120.24490 * 179.68065 * 9 8 7 11 11 H 1.07998 * 120.00132 * 24.41067 * 10 9 8 12 12 C 1.39951 * 120.00095 * 204.41407 * 10 9 8 13 13 N 1.30823 * 120.00056 * 17.85252 * 12 10 9 14 14 Si 1.86802 * 119.99863 * 197.85535 * 12 10 9 15 15 H 1.48501 * 109.47110 * 59.99595 * 14 12 10 16 16 H 1.48497 * 109.46951 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46897 * 299.99889 * 14 12 10 18 18 C 1.40715 * 119.51335 * 359.70409 * 9 8 7 19 19 C 1.37620 * 119.74544 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.47020 * 120.00914 * 2 1 3 21 21 C 1.41379 * 126.79573 * 274.99562 * 20 2 1 22 22 C 1.35448 * 103.98388 * 180.02562 * 21 20 2 23 23 O 1.34045 * 106.44916 * 0.02562 * 22 21 20 24 24 N 1.20930 * 111.56018 * 359.70916 * 23 22 21 25 25 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46521 * 299.99633 * 1 2 3 27 27 H 1.08996 * 109.46888 * 59.98997 * 1 2 3 28 28 H 1.00898 * 111.00092 * 321.04162 * 4 2 1 29 29 H 1.08998 * 109.47637 * 59.99635 * 5 4 2 30 30 H 1.09005 * 109.47067 * 299.99770 * 5 4 2 31 31 H 1.08001 * 119.87141 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.12763 * 180.27683 * 8 7 6 33 33 H 0.96992 * 119.99929 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.12955 * 179.97438 * 18 9 8 35 35 H 1.08000 * 119.87207 * 179.97438 * 19 18 9 36 36 H 1.07995 * 128.01064 * 359.96206 * 21 20 2 37 37 H 1.08002 * 126.77887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 6 3.9492 -0.5654 -3.8168 8 6 4.4229 -1.2467 -4.9147 9 6 3.5192 -1.8901 -5.7803 10 6 3.9938 -2.5875 -6.9151 11 1 5.0033 -2.9710 -6.9302 12 6 3.1554 -2.7807 -8.0189 13 7 2.0841 -2.0439 -8.1636 14 14 3.5659 -4.0909 -9.2856 15 1 3.6045 -5.4213 -8.6269 16 1 2.5282 -4.0948 -10.3478 17 1 4.8912 -3.7984 -9.8885 18 6 2.1397 -1.8340 -5.5087 19 6 1.6890 -1.1524 -4.4013 20 6 2.0323 -0.7106 1.2304 21 6 2.2216 -0.1497 2.5143 22 6 2.6815 -1.1837 3.2586 23 8 2.7421 -2.2433 2.4399 24 7 2.3738 -1.9633 1.3226 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.4495 -1.4979 -1.4101 29 1 2.7589 1.0462 -2.1182 30 1 1.0871 0.6165 -2.5525 31 1 4.6405 -0.0665 -3.1538 32 1 5.4837 -1.2834 -5.1136 33 1 1.5028 -2.1781 -8.9284 34 1 1.4372 -2.3239 -6.1667 35 1 0.6306 -1.1077 -4.1911 36 1 2.0423 0.8678 2.8285 37 1 2.9469 -1.1593 4.3052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349251988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 74.670801 kcal Electronic energy + Delta-G solvation = -19589.916298 eV Core-core repulsion = 16527.877544 eV Total energy + Delta-G solvation = -3062.038754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.86208 -37.99201 -36.81048 -34.12826 -33.22646 -31.61133 -30.78160 -29.27613 -28.81327 -26.11631 -24.27476 -23.04813 -22.80460 -20.97038 -20.33390 -19.85303 -17.81987 -17.42582 -17.25896 -15.73534 -15.28747 -15.02435 -14.41073 -14.26737 -13.90309 -13.45776 -13.31374 -13.23249 -12.88139 -12.46697 -12.09139 -11.89955 -11.72726 -11.52029 -11.39970 -11.16937 -11.01753 -10.91738 -10.52665 -10.36259 -10.02894 -9.61331 -9.53253 -9.36159 -9.09739 -8.08709 -7.41339 -7.26697 -6.74187 -4.32194 1.54931 2.30081 2.77405 3.07554 3.10432 3.12868 3.21440 3.30045 3.94898 4.21682 4.27172 4.65251 4.90660 5.06248 5.07900 5.18375 5.32214 5.43891 5.63933 5.71834 5.77497 5.88306 5.92509 5.96267 6.12918 6.30357 6.40019 6.45135 6.97745 7.10177 7.30637 7.34500 7.41670 7.64680 7.72239 7.92388 8.08711 8.17280 8.33866 8.40417 8.67080 8.92662 9.01312 10.20434 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033736 B = 0.003352 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.782047 B = 8351.592519 C = 8623.010346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.157 3.843 3 H 0.095 0.905 4 N -0.674 5.674 5 C 0.126 3.874 6 C -0.215 4.215 7 C -0.067 4.067 8 C -0.229 4.229 9 C 0.113 3.887 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.908 3.092 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.166 4.166 19 C -0.094 4.094 20 C 0.030 3.970 21 C -0.235 4.235 22 C -0.070 4.070 23 O 0.096 5.904 24 N -0.339 5.339 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.347 0.653 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.280 0.720 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 4.200 16.769 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.113 0.887 4 N -0.305 5.305 5 C -0.002 4.002 6 C -0.216 4.216 7 C -0.086 4.086 8 C -0.248 4.248 9 C 0.111 3.889 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.186 4.186 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.256 4.256 22 C -0.152 4.152 23 O 0.028 5.972 24 N -0.041 5.041 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.185 0.815 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.760 3.308 15.870 16.444 hybrid contribution -0.868 0.450 -0.328 1.031 sum -3.628 3.758 15.542 16.396 Atomic orbital electron populations 1.22469 0.95954 1.02662 1.02512 1.19845 0.92432 0.96541 0.86625 0.88723 1.60593 1.57059 1.09813 1.03011 1.20598 0.97771 0.93606 0.88185 1.18846 0.93643 1.10563 0.98573 1.20324 0.93853 0.98361 0.96074 1.20968 0.97915 1.06103 0.99833 1.17616 0.91630 0.88460 0.91199 1.19580 0.99601 1.31382 0.98747 0.90504 1.25910 0.94120 0.95188 0.98905 1.69821 1.12023 1.32323 1.27775 0.86382 0.79121 0.81804 0.79493 1.18805 1.20373 1.19009 1.21270 0.96359 1.03597 0.97334 1.20511 0.96356 0.98759 0.95672 1.23648 1.02080 0.90617 0.96653 1.22671 1.08034 1.01922 0.93017 1.25958 1.03265 0.86859 0.99101 1.84907 1.62238 1.35312 1.14700 1.73926 1.14375 1.17345 0.98450 0.92197 0.92068 0.91480 0.83386 0.92003 0.95993 0.89555 0.89122 0.90881 0.86551 0.89940 0.81499 0.77163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.14 37.16 0.34 -1.64 16 2 C 0.16 2.07 3.10 -68.86 -0.21 1.86 16 3 H 0.09 1.14 7.80 -51.93 -0.40 0.73 16 4 N -0.67 -11.23 6.09 -109.22 -0.67 -11.90 16 5 C 0.13 2.22 5.60 -4.98 -0.03 2.19 16 6 C -0.21 -4.73 5.42 -104.33 -0.56 -5.30 16 7 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 8 C -0.23 -5.81 9.80 -38.87 -0.38 -6.19 16 9 C 0.11 3.10 5.58 -106.83 -0.60 2.50 16 10 C -0.46 -12.59 9.05 -37.74 -0.34 -12.93 16 11 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.79 -20.80 10.95 55.55 0.61 -20.19 16 14 Si 0.91 18.97 29.60 -169.99 -5.03 13.94 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 19 C -0.09 -2.21 9.67 -39.66 -0.38 -2.59 16 20 C 0.03 0.41 6.28 -82.10 -0.52 -0.11 16 21 C -0.23 -2.32 11.12 -39.38 -0.44 -2.76 16 22 C -0.07 -0.62 12.30 29.74 0.37 -0.25 16 23 O 0.10 1.23 11.20 17.16 0.19 1.42 16 24 N -0.34 -5.23 11.89 33.42 0.40 -4.83 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 28 H 0.35 6.08 8.46 -39.29 -0.33 5.75 16 29 H 0.06 1.04 7.99 -51.93 -0.42 0.63 16 30 H 0.02 0.36 7.38 -51.93 -0.38 -0.02 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 34 H 0.12 3.17 6.16 -52.48 -0.32 2.85 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.21 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -29.87 319.59 -8.00 -37.87 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.75 Total: 8.90 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -3.57 Total: -30.03 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.34 Total: -36.92 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.19 Total: 1.42 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.87 -8.00 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349251988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.542 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds