Wall clock time and date at job start Mon Mar 30 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47512 * 2 1 4 4 N 1.46903 * 109.46657 * 240.00286 * 2 1 3 5 5 C 1.46895 * 111.00026 * 85.00615 * 4 2 1 6 6 C 1.50701 * 109.47181 * 179.97438 * 5 4 2 7 7 C 1.38631 * 119.75383 * 269.72663 * 6 5 4 8 8 C 1.37618 * 120.25255 * 179.71943 * 7 6 5 9 9 C 1.40710 * 119.74139 * 0.57105 * 8 7 6 10 10 C 1.41398 * 120.24490 * 179.68065 * 9 8 7 11 11 H 1.07998 * 120.00132 * 24.41067 * 10 9 8 12 12 C 1.39951 * 120.00095 * 204.41407 * 10 9 8 13 13 N 1.30823 * 120.00056 * 17.85252 * 12 10 9 14 14 Si 1.86802 * 119.99863 * 197.85535 * 12 10 9 15 15 H 1.48501 * 109.47110 * 59.99595 * 14 12 10 16 16 H 1.48497 * 109.46951 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46897 * 299.99889 * 14 12 10 18 18 C 1.40715 * 119.51335 * 359.70409 * 9 8 7 19 19 C 1.37620 * 119.74544 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.47020 * 120.00914 * 2 1 3 21 21 C 1.41379 * 126.79573 * 274.99562 * 20 2 1 22 22 C 1.35448 * 103.98388 * 180.02562 * 21 20 2 23 23 O 1.34045 * 106.44916 * 0.02562 * 22 21 20 24 24 N 1.20930 * 111.56018 * 359.70916 * 23 22 21 25 25 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46521 * 299.99633 * 1 2 3 27 27 H 1.08996 * 109.46888 * 59.98997 * 1 2 3 28 28 H 1.00898 * 111.00092 * 321.04162 * 4 2 1 29 29 H 1.08998 * 109.47637 * 59.99635 * 5 4 2 30 30 H 1.09005 * 109.47067 * 299.99770 * 5 4 2 31 31 H 1.08001 * 119.87141 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.12763 * 180.27683 * 8 7 6 33 33 H 0.96992 * 119.99929 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.12955 * 179.97438 * 18 9 8 35 35 H 1.08000 * 119.87207 * 179.97438 * 19 18 9 36 36 H 1.07995 * 128.01064 * 359.96206 * 21 20 2 37 37 H 1.08002 * 126.77887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 6 3.9492 -0.5654 -3.8168 8 6 4.4229 -1.2467 -4.9147 9 6 3.5192 -1.8901 -5.7803 10 6 3.9938 -2.5875 -6.9151 11 1 5.0033 -2.9710 -6.9302 12 6 3.1554 -2.7807 -8.0189 13 7 2.0841 -2.0439 -8.1636 14 14 3.5659 -4.0909 -9.2856 15 1 3.6045 -5.4213 -8.6269 16 1 2.5282 -4.0948 -10.3478 17 1 4.8912 -3.7984 -9.8885 18 6 2.1397 -1.8340 -5.5087 19 6 1.6890 -1.1524 -4.4013 20 6 2.0323 -0.7106 1.2304 21 6 2.2216 -0.1497 2.5143 22 6 2.6815 -1.1837 3.2586 23 8 2.7421 -2.2433 2.4399 24 7 2.3738 -1.9633 1.3226 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.4495 -1.4979 -1.4101 29 1 2.7589 1.0462 -2.1182 30 1 1.0871 0.6165 -2.5525 31 1 4.6405 -0.0665 -3.1538 32 1 5.4837 -1.2834 -5.1136 33 1 1.5028 -2.1781 -8.9284 34 1 1.4372 -2.3239 -6.1667 35 1 0.6306 -1.1077 -4.1911 36 1 2.0423 0.8678 2.8285 37 1 2.9469 -1.1593 4.3052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349251988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:12 Heat of formation + Delta-G solvation = 56.632691 kcal Electronic energy + Delta-G solvation = -19590.698489 eV Core-core repulsion = 16527.877544 eV Total energy + Delta-G solvation = -3062.820945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.75703 -39.68401 -38.14960 -35.78632 -34.49407 -32.64551 -32.11795 -31.17486 -30.29112 -27.74400 -25.50381 -24.31812 -23.83026 -22.89218 -21.66333 -21.23851 -19.22426 -18.71746 -18.34894 -17.28408 -16.73891 -16.21264 -15.88144 -15.66447 -15.46168 -14.96865 -14.56801 -14.22589 -14.10359 -13.86983 -13.80960 -13.42718 -13.17376 -12.95661 -12.74452 -12.64747 -12.44466 -12.35658 -12.12487 -11.97708 -11.40258 -11.27632 -11.00524 -10.88329 -10.43906 -9.43531 -9.29787 -9.17011 -8.64750 -6.34103 0.79715 0.94083 1.15346 1.36339 1.44040 1.47765 1.52822 2.19914 2.62605 2.68122 3.23464 3.37820 3.77882 3.92338 4.12821 4.20655 4.30053 4.36043 4.43838 4.54976 4.58471 4.63065 4.70010 4.80114 4.87682 5.00389 5.03649 5.14580 5.15804 5.28311 5.36922 5.47496 5.70629 5.93666 6.09616 6.15960 6.22586 6.39183 6.42364 6.69926 6.93811 7.03899 7.57324 8.32358 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033736 B = 0.003352 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.782047 B = 8351.592519 C = 8623.010346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.157 3.843 3 H 0.110 0.890 4 N -0.688 5.688 5 C 0.134 3.866 6 C -0.202 4.202 7 C -0.074 4.074 8 C -0.247 4.247 9 C 0.080 3.920 10 C -0.505 4.505 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.825 5.825 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.259 1.259 18 C -0.191 4.191 19 C -0.097 4.097 20 C 0.011 3.989 21 C -0.239 4.239 22 C -0.054 4.054 23 O 0.079 5.921 24 N -0.389 5.389 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.338 0.662 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.288 0.712 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.199 0.801 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 5.289 18.784 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.046 3.954 3 H 0.128 0.872 4 N -0.318 5.318 5 C 0.007 3.993 6 C -0.203 4.203 7 C -0.092 4.092 8 C -0.267 4.267 9 C 0.078 3.922 10 C -0.535 4.535 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.803 3.197 15 H -0.187 1.187 16 H -0.189 1.189 17 H -0.183 1.183 18 C -0.210 4.210 19 C -0.116 4.116 20 C -0.149 4.149 21 C -0.261 4.261 22 C -0.135 4.135 23 O 0.014 5.986 24 N -0.094 5.094 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.157 0.843 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.216 0.784 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.145 4.415 17.916 18.718 hybrid contribution -0.762 0.217 -0.729 1.077 sum -3.907 4.631 17.187 18.224 Atomic orbital electron populations 1.22379 0.94502 1.02130 1.03739 1.19967 0.93605 0.96779 0.85008 0.87165 1.60474 1.57923 1.09744 1.03674 1.20501 0.98744 0.93321 0.86769 1.19336 0.93005 1.08625 0.99347 1.20637 0.95036 0.97900 0.95646 1.21169 0.98008 1.06798 1.00697 1.17958 0.92487 0.89598 0.92171 1.19821 1.00199 1.33415 1.00045 0.90935 1.26755 0.93714 0.96874 1.00563 1.69868 1.12933 1.33506 1.28811 0.85261 0.79310 0.78365 0.76808 1.18672 1.18927 1.18314 1.21257 0.95966 1.05213 0.98580 1.20782 0.97915 0.97992 0.94867 1.23953 1.02265 0.90624 0.98038 1.23059 1.07992 1.03586 0.91423 1.26899 1.00918 0.85237 1.00410 1.84838 1.62379 1.36798 1.14619 1.73933 1.16635 1.18817 1.00065 0.93593 0.89780 0.91239 0.84349 0.90623 0.94353 0.87252 0.88922 0.90122 0.88242 0.87702 0.78425 0.72402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 9.14 71.98 0.66 -2.73 16 2 C 0.16 3.80 3.10 44.17 0.14 3.93 16 3 H 0.11 2.29 7.80 -2.39 -0.02 2.27 16 4 N -0.69 -21.94 6.09 -499.46 -3.04 -24.98 16 5 C 0.13 4.44 5.60 85.56 0.48 4.92 16 6 C -0.20 -8.72 5.42 -19.67 -0.11 -8.83 16 7 C -0.07 -3.40 9.67 22.22 0.21 -3.19 16 8 C -0.25 -12.92 9.80 22.73 0.22 -12.70 16 9 C 0.08 4.56 5.58 -21.29 -0.12 4.44 16 10 C -0.51 -28.63 9.05 23.46 0.21 -28.41 16 11 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 12 C 0.04 1.87 5.14 85.26 0.44 2.31 16 13 N -0.83 -44.47 10.95 21.83 0.24 -44.23 16 14 Si 0.98 39.57 29.60 68.60 2.03 41.60 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 C -0.19 -10.43 8.70 22.73 0.20 -10.23 16 19 C -0.10 -4.57 9.67 22.22 0.21 -4.35 16 20 C 0.01 0.27 6.28 43.58 0.27 0.54 16 21 C -0.24 -3.94 11.12 22.40 0.25 -3.69 16 22 C -0.05 -0.77 12.30 67.17 0.83 0.05 16 23 O 0.08 1.92 11.20 71.58 0.80 2.72 16 24 N -0.39 -11.78 11.89 -49.56 -0.59 -12.37 16 25 H 0.04 1.05 8.13 -2.39 -0.02 1.03 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 28 H 0.34 11.69 8.46 -89.70 -0.76 10.93 16 29 H 0.08 2.32 7.99 -2.39 -0.02 2.30 16 30 H 0.04 1.15 7.38 -2.38 -0.02 1.14 16 31 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 34 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 35 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.26 0.75 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -68.09 319.59 3.66 -64.43 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.32 Total: 30.78 kcal Atomic # 6 Polarization: -61.84 SS G_CDS: 3.90 Total: -57.94 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -3.39 Total: -81.58 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.80 Total: 2.72 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -68.09 3.66 -64.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349251988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.060 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds