Wall clock time and date at job start Mon Mar 30 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.47207 * 109.46879 * 119.99461 * 2 1 3 5 5 N 2.60804 * 109.46885 * 119.99616 * 2 1 3 6 6 N 1.46500 * 109.47283 * 239.99598 * 2 1 3 7 7 C 1.34777 * 119.99864 * 85.00120 * 6 2 1 8 8 O 1.21279 * 120.00143 * 359.97438 * 7 6 2 9 9 C 1.50699 * 119.99840 * 180.02562 * 7 6 2 10 10 C 1.52994 * 109.47054 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47366 * 54.99448 * 10 9 7 12 12 C 1.50709 * 109.47103 * 294.99620 * 10 9 7 13 13 H 1.07995 * 119.99633 * 325.12683 * 12 10 9 14 14 C 1.37876 * 119.99987 * 145.12515 * 12 10 9 15 15 N 1.31515 * 119.99909 * 184.98790 * 14 12 10 16 16 Si 1.86803 * 120.00190 * 4.99136 * 14 12 10 17 17 H 1.48498 * 109.46879 * 84.72701 * 16 14 12 18 18 H 1.48494 * 109.47132 * 204.72622 * 16 14 12 19 19 H 1.48496 * 109.47001 * 324.73033 * 16 14 12 20 20 C 1.50695 * 109.47302 * 174.99840 * 10 9 7 21 21 C 1.38233 * 120.00247 * 64.68857 * 20 10 9 22 22 C 1.38233 * 120.00209 * 179.78776 * 21 20 10 23 23 C 1.38231 * 120.00271 * 0.44825 * 22 21 20 24 24 C 1.38240 * 119.99562 * 359.80015 * 23 22 21 25 25 C 1.38230 * 120.00103 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47051 * 300.00285 * 1 2 3 28 28 H 1.08994 * 109.46909 * 60.00173 * 1 2 3 29 29 H 0.97003 * 119.99739 * 264.99817 * 6 2 1 30 30 H 1.09003 * 109.47036 * 299.99841 * 9 7 6 31 31 H 1.09000 * 109.47138 * 59.99377 * 9 7 6 32 32 H 0.96995 * 119.99842 * 180.02562 * 15 14 12 33 33 H 1.08001 * 119.99798 * 359.97438 * 21 20 10 34 34 H 1.08010 * 120.00114 * 180.26934 * 22 21 20 35 35 H 1.07995 * 120.00629 * 179.83398 * 23 22 21 36 36 H 1.08003 * 119.99783 * 180.02562 * 24 23 22 37 37 H 1.08002 * 120.00338 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6938 1.2020 5 7 2.3993 -1.2293 2.1296 6 7 2.0184 -0.6907 -1.1961 7 6 2.1471 -0.0184 -2.3571 8 8 1.8583 1.1582 -2.4118 9 6 2.6490 -0.7290 -3.5876 10 6 2.7012 0.2542 -4.7587 11 1 3.3032 1.1192 -4.4803 12 6 1.3038 0.7037 -5.0999 13 1 0.4769 0.0156 -5.0044 14 6 1.0811 1.9932 -5.5340 15 7 -0.1476 2.4155 -5.7378 16 14 2.5246 3.1406 -5.8327 17 1 3.0590 2.9181 -7.2002 18 1 2.0729 4.5490 -5.7009 19 1 3.5894 2.8667 -4.8346 20 6 3.3175 -0.4226 -5.9557 21 6 2.6752 -1.4914 -6.5523 22 6 3.2384 -2.1094 -7.6531 23 6 4.4485 -1.6646 -8.1517 24 6 5.0934 -0.5991 -7.5519 25 6 4.5279 0.0219 -6.4540 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6319 -1.1524 30 1 3.6481 -1.1215 -3.3984 31 1 1.9761 -1.5509 -3.8324 32 1 -0.3043 3.3226 -6.0435 33 1 1.7317 -1.8416 -6.1603 34 1 2.7343 -2.9417 -8.1219 35 1 4.8898 -2.1492 -9.0100 36 1 6.0387 -0.2513 -7.9417 37 1 5.0320 0.8541 -5.9852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355271282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:53 Heat of formation + Delta-G solvation = -7.277143 kcal Electronic energy + Delta-G solvation = -20260.377456 eV Core-core repulsion = 17194.785173 eV Total energy + Delta-G solvation = -3065.592283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89499 -39.86769 -38.15275 -36.09346 -35.50447 -33.68106 -31.98907 -31.55426 -30.10865 -27.73610 -25.49164 -24.10297 -23.23568 -21.68770 -20.89816 -19.39648 -18.95636 -17.88465 -17.21882 -16.64214 -16.39378 -15.95994 -15.70710 -15.41794 -15.18576 -14.83896 -14.47653 -14.25158 -14.07915 -13.92638 -13.76688 -13.71052 -13.39799 -13.16885 -12.90976 -12.82455 -12.70733 -12.33954 -11.99846 -11.83684 -11.75038 -11.42500 -10.94144 -10.70881 -10.45800 -10.13395 -9.59441 -9.26755 -8.15142 -6.10828 0.71265 0.76306 1.29185 1.37167 1.38958 1.44445 1.59024 1.95231 2.41658 2.45584 2.83511 3.12550 3.28788 4.02099 4.12449 4.17719 4.26073 4.34701 4.36013 4.50563 4.55329 4.70436 4.74724 4.89436 4.89877 4.92681 5.15809 5.26791 5.29194 5.42286 5.44745 5.48216 5.76265 5.80090 5.86395 6.06874 6.31326 6.37568 6.42584 6.67357 6.88841 7.51592 7.53061 9.01674 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.005946 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.582868 B = 4708.081607 C = 5669.154236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.248 3.752 3 H 0.126 0.874 4 C 0.234 3.766 5 N -0.451 5.451 6 N -0.724 5.724 7 C 0.522 3.478 8 O -0.544 6.544 9 C -0.112 4.112 10 C 0.046 3.954 11 H 0.040 0.960 12 C -0.459 4.459 13 H 0.041 0.959 14 C 0.028 3.972 15 N -0.950 5.950 16 Si 0.915 3.085 17 H -0.272 1.272 18 H -0.301 1.301 19 H -0.247 1.247 20 C -0.063 4.063 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.157 4.157 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.416 0.584 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.257 0.743 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -9.656 3.934 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.140 3.860 3 H 0.143 0.857 4 C -0.085 4.085 5 N -0.128 5.128 6 N -0.381 5.381 7 C 0.310 3.690 8 O -0.419 6.419 9 C -0.152 4.152 10 C 0.027 3.973 11 H 0.058 0.942 12 C -0.497 4.497 13 H 0.059 0.941 14 C -0.169 4.169 15 N -0.592 5.592 16 Si 0.743 3.257 17 H -0.197 1.197 18 H -0.229 1.229 19 H -0.171 1.171 20 C -0.063 4.063 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.143 4.143 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.253 0.747 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.121 -9.440 5.231 13.507 hybrid contribution -0.047 0.930 -0.550 1.082 sum 8.074 -8.510 4.681 12.630 Atomic orbital electron populations 1.22123 0.91268 1.04077 1.03986 1.18194 0.95613 0.96084 0.76155 0.85693 1.29128 0.92124 0.92895 0.94319 1.81248 1.09835 1.09676 1.12054 1.45908 1.69589 1.14738 1.07915 1.20950 0.76491 0.87133 0.84443 1.90762 1.48719 1.17965 1.84429 1.21592 1.02835 0.99222 0.91562 1.18195 0.95148 0.94321 0.89682 0.94185 1.20811 0.91716 0.96117 1.41076 0.94098 1.25524 0.96614 0.99463 0.95267 1.70017 1.21461 1.17906 1.49827 0.86235 0.82153 0.78193 0.79148 1.19742 1.22870 1.17121 1.20546 0.93000 0.94471 0.98318 1.21043 0.99326 0.96319 0.96857 1.21413 0.96238 1.00503 0.96174 1.21329 0.95965 0.97782 1.00984 1.21329 1.00643 0.96620 0.95727 1.21224 0.96369 1.01056 0.98917 0.90477 0.89147 0.91966 0.74749 0.87589 0.88100 0.93415 0.86756 0.84361 0.83837 0.84457 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.44 71.98 0.68 -2.53 16 2 C 0.25 5.34 3.02 43.19 0.13 5.47 16 3 H 0.13 2.89 7.58 -2.39 -0.02 2.87 16 4 C 0.23 5.01 14.83 89.44 1.33 6.34 16 5 N -0.45 -11.53 18.54 20.01 0.37 -11.16 16 6 N -0.72 -16.90 5.06 -451.20 -2.28 -19.18 16 7 C 0.52 17.52 7.54 87.66 0.66 18.18 16 8 O -0.54 -24.07 14.64 -3.03 -0.04 -24.12 16 9 C -0.11 -3.62 4.96 29.85 0.15 -3.47 16 10 C 0.05 1.95 1.21 -12.29 -0.01 1.93 16 11 H 0.04 1.85 4.70 -2.39 -0.01 1.84 16 12 C -0.46 -24.42 6.87 25.60 0.18 -24.24 16 13 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 14 C 0.03 1.62 5.47 84.65 0.46 2.08 16 15 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 16 Si 0.92 46.18 27.15 68.60 1.86 48.05 16 17 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 19 H -0.25 -11.73 6.06 99.48 0.60 -11.12 16 20 C -0.06 -2.41 4.55 -19.87 -0.09 -2.50 16 21 C -0.12 -4.14 8.87 22.27 0.20 -3.94 16 22 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 23 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 24 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.16 -5.57 9.43 22.27 0.21 -5.36 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.42 7.05 8.58 -92.71 -0.80 6.25 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.10 2.98 7.86 -2.39 -0.02 2.96 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.11 4.06 7.80 -2.91 -0.02 4.03 16 34 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.11 3.75 7.95 -2.91 -0.02 3.73 16 Total: -1.00 -72.72 323.53 4.95 -67.77 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.19 Total: 16.70 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.56 Total: -18.56 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.61 Total: -89.84 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.86 Total: 48.05 kcal Total: -72.72 4.95 -67.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355271282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.491 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds