Wall clock time and date at job start Mon Mar 30 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46949 * 2 1 4 4 C 1.47200 * 109.47276 * 240.00759 * 2 1 3 5 5 N 2.60805 * 109.47176 * 240.00691 * 2 1 3 6 6 N 1.46499 * 109.47550 * 120.00870 * 2 1 3 7 7 C 1.34780 * 119.99704 * 275.00204 * 6 2 1 8 8 O 1.21288 * 120.00044 * 359.97438 * 7 6 2 9 9 C 1.50701 * 120.00288 * 179.97438 * 7 6 2 10 10 C 1.52994 * 109.47301 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47347 * 305.36975 * 10 9 7 12 12 C 1.50706 * 109.47013 * 65.37188 * 10 9 7 13 13 H 1.07993 * 120.00144 * 34.61488 * 12 10 9 14 14 C 1.37878 * 119.99899 * 214.62050 * 12 10 9 15 15 N 1.31507 * 120.00182 * 186.44673 * 14 12 10 16 16 Si 1.86803 * 120.00110 * 6.44577 * 14 12 10 17 17 H 1.48497 * 109.47246 * 85.00992 * 16 14 12 18 18 H 1.48497 * 109.47278 * 205.01335 * 16 14 12 19 19 H 1.48500 * 109.47123 * 325.00921 * 16 14 12 20 20 C 1.50696 * 109.47081 * 185.37128 * 10 9 7 21 21 C 1.38240 * 119.99817 * 296.35598 * 20 10 9 22 22 C 1.38236 * 119.99808 * 179.78854 * 21 20 10 23 23 C 1.38243 * 120.00010 * 0.44306 * 22 21 20 24 24 C 1.38227 * 119.99756 * 359.81568 * 23 22 21 25 25 C 1.38230 * 120.00322 * 116.63522 * 20 10 9 26 26 H 1.08997 * 109.47395 * 59.99880 * 1 2 3 27 27 H 1.09007 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47026 * 299.99086 * 1 2 3 29 29 H 0.96991 * 120.00726 * 94.99576 * 6 2 1 30 30 H 1.08996 * 109.47136 * 300.00088 * 9 7 6 31 31 H 1.09001 * 109.46279 * 59.99931 * 9 7 6 32 32 H 0.97002 * 120.00655 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.00331 * 0.02562 * 21 20 10 34 34 H 1.07995 * 120.00325 * 180.27802 * 22 21 20 35 35 H 1.07995 * 119.99835 * 179.83618 * 23 22 21 36 36 H 1.08004 * 119.99975 * 180.02562 * 24 23 22 37 37 H 1.08003 * 119.99698 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6937 -1.2020 5 7 2.3994 -1.2292 -2.1296 6 7 2.0184 -0.6908 1.1960 7 6 2.1471 -0.0185 2.3571 8 8 1.8590 1.1584 2.4116 9 6 2.6490 -0.7291 3.5876 10 6 2.7011 0.2540 4.7587 11 1 3.2978 1.1221 4.4781 12 6 1.3029 0.6964 5.1058 13 1 0.4785 0.0056 5.0096 14 6 1.0763 1.9832 5.5462 15 7 -0.1188 2.3325 5.9692 16 14 2.4670 3.2304 5.5419 17 1 2.5641 3.8589 4.2000 18 1 2.1967 4.2768 6.5602 19 1 3.7459 2.5469 5.8621 20 6 3.3258 -0.4200 5.9530 21 6 2.7020 -1.5058 6.5386 22 6 3.2772 -2.1268 7.6315 23 6 4.4717 -1.6564 8.1444 24 6 5.0927 -0.5674 7.5621 25 6 4.5197 0.0509 6.4665 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 2.2491 -1.6318 1.1524 30 1 1.9762 -1.5510 3.8324 31 1 3.6481 -1.1215 3.3983 32 1 -0.2784 3.2379 6.2787 33 1 1.7671 -1.8712 6.1400 34 1 2.7922 -2.9778 8.0863 35 1 4.9197 -2.1400 8.9998 36 1 6.0261 -0.2001 7.9625 37 1 5.0050 0.9017 6.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355271285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:57 Heat of formation + Delta-G solvation = 12.349168 kcal Electronic energy + Delta-G solvation = -20258.705456 eV Core-core repulsion = 17193.964233 eV Total energy + Delta-G solvation = -3064.741222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57547 -38.51738 -37.03539 -34.81243 -33.99396 -31.76574 -30.81891 -30.21256 -28.78003 -26.04415 -24.33476 -22.59019 -21.87966 -20.37106 -19.49440 -18.21776 -16.98859 -16.56784 -15.94797 -15.45607 -14.88702 -14.59800 -14.28311 -13.98084 -13.88659 -13.34558 -13.15926 -12.90099 -12.76759 -12.59886 -12.49482 -12.33084 -11.96884 -11.85645 -11.82749 -11.39432 -11.08669 -10.79113 -10.56641 -10.37890 -9.92016 -9.63740 -9.29178 -9.07941 -8.97170 -8.42626 -8.21869 -7.83887 -6.01473 -3.98691 2.08513 2.12438 2.31386 2.55983 3.26352 3.41640 3.45746 3.50094 3.50984 3.84373 4.50727 4.56138 5.02060 5.08885 5.26246 5.47195 5.50906 5.54452 5.64558 5.67601 5.83945 5.88630 5.94635 6.05804 6.20612 6.22736 6.30495 6.52935 6.56820 6.67208 6.81094 6.97432 7.13374 7.24797 7.28145 7.54594 7.69531 7.77497 7.80058 8.49240 8.77953 8.97709 9.63688 11.11142 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.005981 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.848914 B = 4680.173249 C = 5643.568674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.243 3.757 3 H 0.128 0.872 4 C 0.206 3.794 5 N -0.425 5.425 6 N -0.743 5.743 7 C 0.521 3.479 8 O -0.492 6.492 9 C -0.117 4.117 10 C 0.056 3.944 11 H 0.050 0.950 12 C -0.490 4.490 13 H 0.072 0.928 14 C 0.086 3.914 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.272 1.272 18 H -0.297 1.297 19 H -0.261 1.261 20 C -0.039 4.039 21 C -0.101 4.101 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.126 4.126 25 C -0.136 4.136 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.262 0.738 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -7.436 -4.847 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.145 0.855 4 C -0.113 4.113 5 N -0.101 5.101 6 N -0.400 5.400 7 C 0.308 3.692 8 O -0.363 6.363 9 C -0.157 4.157 10 C 0.036 3.964 11 H 0.068 0.932 12 C -0.526 4.526 13 H 0.090 0.910 14 C -0.116 4.116 15 N -0.535 5.535 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.186 1.186 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.146 4.146 23 C -0.167 4.167 24 C -0.145 4.145 25 C -0.154 4.154 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.938 -7.163 -6.098 11.124 hybrid contribution 0.523 0.537 0.476 0.887 sum 6.461 -6.626 -5.622 10.828 Atomic orbital electron populations 1.22183 0.92039 1.03346 1.04397 1.18193 0.95157 0.96379 0.76824 0.85481 1.29426 0.93069 0.93820 0.94969 1.81207 1.08882 1.08749 1.11279 1.46215 1.70951 1.14123 1.08742 1.20921 0.77104 0.87785 0.83371 1.90767 1.46303 1.15730 1.83474 1.21697 1.00443 1.00256 0.93296 1.18134 0.98160 0.92984 0.87101 0.93189 1.20574 0.90113 0.97694 1.44256 0.91003 1.24880 0.95127 0.98077 0.93536 1.69889 1.21753 1.19238 1.42602 0.86951 0.83655 0.81548 0.77847 1.19747 1.22347 1.18604 1.20717 0.91661 0.93028 0.98547 1.20958 0.99128 0.96050 0.95803 1.21054 0.96065 1.00171 0.97280 1.20864 0.96933 0.98302 1.00643 1.20967 0.99707 0.96797 0.96988 1.21152 0.96409 1.00206 0.97634 0.91204 0.91781 0.89078 0.76700 0.89375 0.91055 0.92811 0.86242 0.87212 0.87461 0.87411 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.44 37.16 0.35 -1.35 16 2 C 0.24 2.73 3.02 -70.72 -0.21 2.52 16 3 H 0.13 1.49 7.58 -51.93 -0.39 1.10 16 4 C 0.21 2.37 14.83 -20.76 -0.31 2.07 16 5 N -0.42 -5.76 18.54 42.16 0.78 -4.97 16 6 N -0.74 -9.08 5.06 -56.54 -0.29 -9.37 16 7 C 0.52 8.75 7.55 -10.98 -0.08 8.67 16 8 O -0.49 -10.54 14.66 5.55 0.08 -10.46 16 9 C -0.12 -1.93 4.94 -27.89 -0.14 -2.07 16 10 C 0.06 1.18 1.28 -92.93 -0.12 1.06 16 11 H 0.05 1.14 4.79 -51.93 -0.25 0.89 16 12 C -0.49 -12.63 6.94 -34.44 -0.24 -12.87 16 13 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 14 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 15 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 16 Si 0.87 21.83 27.04 -169.99 -4.60 17.24 16 17 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.26 -6.07 5.15 56.52 0.29 -5.78 16 20 C -0.04 -0.77 4.77 -104.63 -0.50 -1.27 16 21 C -0.10 -1.88 8.87 -39.58 -0.35 -2.23 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.15 -2.35 10.05 -39.58 -0.40 -2.75 16 24 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 25 C -0.14 -2.57 9.13 -39.58 -0.36 -2.93 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.40 3.81 8.58 -40.82 -0.35 3.46 16 30 H 0.09 1.35 7.80 -51.93 -0.41 0.94 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.12 2.16 7.77 -52.49 -0.41 1.75 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.11 2.08 6.96 -52.48 -0.37 1.71 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.20 321.56 -6.45 -38.65 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.80 Total: 4.08 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.25 Total: -13.82 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 1.27 Total: -40.53 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.60 Total: 17.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.20 -6.45 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355271285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.995 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds