Wall clock time and date at job start Mon Mar 30 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46949 * 2 1 4 4 C 1.47200 * 109.47276 * 240.00759 * 2 1 3 5 5 N 2.60805 * 109.47176 * 240.00691 * 2 1 3 6 6 N 1.46499 * 109.47550 * 120.00870 * 2 1 3 7 7 C 1.34780 * 119.99704 * 275.00204 * 6 2 1 8 8 O 1.21288 * 120.00044 * 359.97438 * 7 6 2 9 9 C 1.50701 * 120.00288 * 179.97438 * 7 6 2 10 10 C 1.52994 * 109.47301 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47347 * 305.36975 * 10 9 7 12 12 C 1.50706 * 109.47013 * 65.37188 * 10 9 7 13 13 H 1.07993 * 120.00144 * 34.61488 * 12 10 9 14 14 C 1.37878 * 119.99899 * 214.62050 * 12 10 9 15 15 N 1.31507 * 120.00182 * 186.44673 * 14 12 10 16 16 Si 1.86803 * 120.00110 * 6.44577 * 14 12 10 17 17 H 1.48497 * 109.47246 * 85.00992 * 16 14 12 18 18 H 1.48497 * 109.47278 * 205.01335 * 16 14 12 19 19 H 1.48500 * 109.47123 * 325.00921 * 16 14 12 20 20 C 1.50696 * 109.47081 * 185.37128 * 10 9 7 21 21 C 1.38240 * 119.99817 * 296.35598 * 20 10 9 22 22 C 1.38236 * 119.99808 * 179.78854 * 21 20 10 23 23 C 1.38243 * 120.00010 * 0.44306 * 22 21 20 24 24 C 1.38227 * 119.99756 * 359.81568 * 23 22 21 25 25 C 1.38230 * 120.00322 * 116.63522 * 20 10 9 26 26 H 1.08997 * 109.47395 * 59.99880 * 1 2 3 27 27 H 1.09007 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47026 * 299.99086 * 1 2 3 29 29 H 0.96991 * 120.00726 * 94.99576 * 6 2 1 30 30 H 1.08996 * 109.47136 * 300.00088 * 9 7 6 31 31 H 1.09001 * 109.46279 * 59.99931 * 9 7 6 32 32 H 0.97002 * 120.00655 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.00331 * 0.02562 * 21 20 10 34 34 H 1.07995 * 120.00325 * 180.27802 * 22 21 20 35 35 H 1.07995 * 119.99835 * 179.83618 * 23 22 21 36 36 H 1.08004 * 119.99975 * 180.02562 * 24 23 22 37 37 H 1.08003 * 119.99698 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6937 -1.2020 5 7 2.3994 -1.2292 -2.1296 6 7 2.0184 -0.6908 1.1960 7 6 2.1471 -0.0185 2.3571 8 8 1.8590 1.1584 2.4116 9 6 2.6490 -0.7291 3.5876 10 6 2.7011 0.2540 4.7587 11 1 3.2978 1.1221 4.4781 12 6 1.3029 0.6964 5.1058 13 1 0.4785 0.0056 5.0096 14 6 1.0763 1.9832 5.5462 15 7 -0.1188 2.3325 5.9692 16 14 2.4670 3.2304 5.5419 17 1 2.5641 3.8589 4.2000 18 1 2.1967 4.2768 6.5602 19 1 3.7459 2.5469 5.8621 20 6 3.3258 -0.4200 5.9530 21 6 2.7020 -1.5058 6.5386 22 6 3.2772 -2.1268 7.6315 23 6 4.4717 -1.6564 8.1444 24 6 5.0927 -0.5674 7.5621 25 6 4.5197 0.0509 6.4665 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 2.2491 -1.6318 1.1524 30 1 1.9762 -1.5510 3.8324 31 1 3.6481 -1.1215 3.3983 32 1 -0.2784 3.2379 6.2787 33 1 1.7671 -1.8712 6.1400 34 1 2.7922 -2.9778 8.0863 35 1 4.9197 -2.1400 8.9998 36 1 6.0261 -0.2001 7.9625 37 1 5.0050 0.9017 6.0115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355271285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:56 Heat of formation + Delta-G solvation = -8.285305 kcal Electronic energy + Delta-G solvation = -20259.600234 eV Core-core repulsion = 17193.964233 eV Total energy + Delta-G solvation = -3065.636000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90515 -39.85796 -38.15791 -36.09513 -35.51044 -33.68256 -31.99417 -31.54317 -30.10760 -27.73305 -25.49532 -24.09867 -23.23817 -21.68537 -20.89831 -19.39961 -18.94018 -17.88571 -17.21727 -16.66775 -16.39360 -15.97155 -15.68767 -15.39536 -15.18650 -14.83306 -14.45438 -14.25776 -14.11112 -13.93500 -13.78742 -13.66700 -13.33416 -13.17250 -12.90676 -12.78007 -12.65176 -12.34491 -12.03414 -11.85159 -11.72841 -11.41891 -11.02542 -10.62700 -10.48733 -10.14185 -9.57097 -9.25345 -8.15365 -6.11095 0.73316 0.77901 1.28598 1.38860 1.45668 1.47268 1.58641 1.93647 2.41050 2.48000 2.82930 3.13119 3.31896 4.01294 4.11948 4.18569 4.25660 4.35657 4.36980 4.51508 4.55121 4.71125 4.74388 4.88703 4.91280 4.93359 5.15678 5.26760 5.28511 5.42981 5.45131 5.47674 5.75682 5.81812 5.87345 6.08194 6.31000 6.38842 6.42776 6.66372 6.88773 7.50140 7.53308 9.01069 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.005981 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.848914 B = 4680.173249 C = 5643.568674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.247 3.753 3 H 0.126 0.874 4 C 0.234 3.766 5 N -0.451 5.451 6 N -0.724 5.724 7 C 0.523 3.477 8 O -0.546 6.546 9 C -0.114 4.114 10 C 0.055 3.945 11 H 0.035 0.965 12 C -0.462 4.462 13 H 0.040 0.960 14 C 0.026 3.974 15 N -0.952 5.952 16 Si 0.918 3.082 17 H -0.282 1.282 18 H -0.304 1.304 19 H -0.234 1.234 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.127 4.127 25 C -0.153 4.153 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.416 0.584 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -9.469 -4.597 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 H 0.143 0.857 4 C -0.085 4.085 5 N -0.128 5.128 6 N -0.381 5.381 7 C 0.311 3.689 8 O -0.421 6.421 9 C -0.154 4.154 10 C 0.035 3.965 11 H 0.053 0.947 12 C -0.499 4.499 13 H 0.058 0.942 14 C -0.170 4.170 15 N -0.593 5.593 16 Si 0.745 3.255 17 H -0.209 1.209 18 H -0.232 1.232 19 H -0.157 1.157 20 C -0.062 4.062 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.172 4.172 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.253 0.747 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.187 -9.269 -5.879 13.693 hybrid contribution -0.132 0.998 0.385 1.077 sum 8.054 -8.271 -5.494 12.786 Atomic orbital electron populations 1.22127 0.91244 1.04106 1.04007 1.18199 0.95632 0.96087 0.76152 0.85679 1.29129 0.92131 0.92901 0.94325 1.81254 1.09829 1.09671 1.12054 1.45903 1.69524 1.14760 1.07904 1.20953 0.76424 0.87103 0.84439 1.90759 1.48904 1.17947 1.84470 1.21622 1.02901 0.99315 0.91568 1.18040 0.94897 0.93915 0.89623 0.94717 1.20801 0.91834 0.96311 1.40999 0.94179 1.25553 0.96699 1.00189 0.94544 1.70026 1.23832 1.19340 1.46124 0.86204 0.82851 0.79617 0.76829 1.20854 1.23192 1.15688 1.20511 0.93005 0.94382 0.98310 1.21031 0.99203 0.96325 0.97001 1.21397 0.96281 1.00534 0.96242 1.21317 0.96234 0.97530 1.00953 1.21319 1.00608 0.96595 0.95916 1.21265 0.96510 1.00615 0.98760 0.89152 0.90461 0.91908 0.74712 0.88056 0.87525 0.93427 0.86851 0.84450 0.83903 0.84532 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.44 71.98 0.68 -2.46 16 2 C 0.25 5.24 3.02 43.19 0.13 5.37 16 3 H 0.13 2.85 7.58 -2.39 -0.02 2.83 16 4 C 0.23 4.94 14.83 89.44 1.33 6.27 16 5 N -0.45 -11.44 18.54 20.01 0.37 -11.07 16 6 N -0.72 -16.58 5.06 -451.19 -2.28 -18.86 16 7 C 0.52 17.27 7.55 87.66 0.66 17.93 16 8 O -0.55 -23.79 14.66 -3.05 -0.04 -23.83 16 9 C -0.11 -3.64 4.94 29.85 0.15 -3.49 16 10 C 0.05 2.30 1.28 -12.29 -0.02 2.29 16 11 H 0.03 1.57 4.79 -2.38 -0.01 1.56 16 12 C -0.46 -24.49 6.94 25.60 0.18 -24.31 16 13 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 14 C 0.03 1.54 5.47 84.66 0.46 2.00 16 15 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 16 Si 0.92 46.19 27.04 68.60 1.85 48.04 16 17 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 18 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 19 H -0.23 -10.53 5.15 99.48 0.51 -10.02 16 20 C -0.06 -2.37 4.77 -19.87 -0.09 -2.47 16 21 C -0.12 -4.16 8.87 22.27 0.20 -3.97 16 22 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 23 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 24 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 25 C -0.15 -5.46 9.13 22.27 0.20 -5.25 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.42 6.90 8.58 -92.72 -0.80 6.10 16 30 H 0.10 2.97 7.80 -2.39 -0.02 2.95 16 31 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.11 4.04 7.77 -2.91 -0.02 4.02 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.11 3.85 6.96 -2.91 -0.02 3.83 16 Total: -1.00 -72.83 321.56 4.84 -67.99 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.10 Total: 16.06 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.55 Total: -18.75 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -1.61 Total: -89.50 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.85 Total: 48.04 kcal Total: -72.83 4.84 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355271285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.701 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds