Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.47199 * 109.47326 * 120.00236 * 2 1 3 5 5 N 2.60798 * 109.47333 * 120.00016 * 2 1 3 6 6 N 1.46502 * 109.47071 * 240.00294 * 2 1 3 7 7 C 1.34780 * 119.99881 * 84.99619 * 6 2 1 8 8 O 1.21277 * 120.00336 * 0.02562 * 7 6 2 9 9 C 1.50696 * 119.99721 * 179.97438 * 7 6 2 10 10 C 1.53004 * 109.46995 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47340 * 305.00063 * 10 9 7 12 12 C 1.50698 * 109.46807 * 65.00569 * 10 9 7 13 13 H 1.08005 * 120.00716 * 29.58176 * 12 10 9 14 14 C 1.37884 * 119.99687 * 209.57971 * 12 10 9 15 15 N 1.31510 * 119.99963 * 4.94492 * 14 12 10 16 16 Si 1.86793 * 120.00010 * 184.94295 * 14 12 10 17 17 H 1.48505 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47502 * 120.00140 * 16 14 12 19 19 H 1.48499 * 109.47294 * 240.00493 * 16 14 12 20 20 C 1.50706 * 109.47016 * 185.00250 * 10 9 7 21 21 C 1.38236 * 119.99894 * 296.77000 * 20 10 9 22 22 C 1.38239 * 119.99833 * 179.79043 * 21 20 10 23 23 C 1.38228 * 119.99785 * 0.43797 * 22 21 20 24 24 C 1.38236 * 120.00333 * 359.81331 * 23 22 21 25 25 C 1.38227 * 119.99893 * 117.04382 * 20 10 9 26 26 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47127 * 299.99644 * 1 2 3 28 28 H 1.09000 * 109.47029 * 59.99641 * 1 2 3 29 29 H 0.96996 * 120.00175 * 264.99597 * 6 2 1 30 30 H 1.09002 * 109.47367 * 300.00448 * 9 7 6 31 31 H 1.09005 * 109.47316 * 60.00205 * 9 7 6 32 32 H 0.97000 * 120.00117 * 179.97438 * 15 14 12 33 33 H 1.07998 * 119.99922 * 359.97438 * 21 20 10 34 34 H 1.08002 * 120.00011 * 180.27452 * 22 21 20 35 35 H 1.08005 * 119.99887 * 179.83678 * 23 22 21 36 36 H 1.07998 * 120.00119 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00394 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 7 2.0183 -0.6906 -1.1962 7 6 2.1469 -0.0181 -2.3572 8 8 1.8589 1.1587 -2.4115 9 6 2.6498 -0.7283 -3.5875 10 6 2.7017 0.2550 -4.7586 11 1 1.7220 0.7137 -4.8915 12 6 3.7227 1.3253 -4.4709 13 1 4.5806 1.1016 -3.8540 14 6 3.5618 2.5903 -4.9952 15 7 2.4705 2.8907 -5.6647 16 14 4.8940 3.8774 -4.7547 17 1 6.0125 3.2921 -3.9726 18 1 5.3968 4.3231 -6.0790 19 1 4.3322 5.0403 -4.0216 20 6 3.0863 -0.4813 -6.0160 21 6 4.3239 -1.0902 -6.1093 22 6 4.6750 -1.7692 -7.2611 23 6 3.7922 -1.8316 -8.3229 24 6 2.5568 -1.2183 -8.2316 25 6 2.2039 -0.5429 -7.0782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.2490 -1.6317 -1.1527 30 1 3.6491 -1.1202 -3.3979 31 1 1.9776 -1.5507 -3.8326 32 1 2.3571 3.7808 -6.0332 33 1 5.0151 -1.0380 -5.2812 34 1 5.6401 -2.2488 -7.3322 35 1 4.0676 -2.3599 -9.2238 36 1 1.8672 -1.2667 -9.0614 37 1 1.2387 -0.0637 -7.0069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355271286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = 10.179074 kcal Electronic energy + Delta-G solvation = -20161.250969 eV Core-core repulsion = 17096.415645 eV Total energy + Delta-G solvation = -3064.835325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.44829 -38.31883 -36.97010 -34.72649 -33.88544 -31.58935 -30.69118 -30.02203 -28.60812 -25.72097 -24.32297 -22.68358 -21.63624 -20.28096 -19.50778 -18.20425 -16.58604 -16.39547 -15.75369 -15.34829 -14.82308 -14.48772 -14.19968 -13.96656 -13.84493 -13.26525 -13.17251 -12.86917 -12.66508 -12.46822 -12.28240 -12.04968 -11.93217 -11.75668 -11.62599 -11.36244 -10.90899 -10.73970 -10.56536 -10.28142 -10.06876 -9.47078 -9.19267 -8.94677 -8.89463 -8.35780 -8.06224 -7.64418 -5.95350 -3.94817 2.27063 2.29300 2.38383 2.60087 3.35201 3.37648 3.43282 3.45100 3.56916 3.87826 4.49793 4.72830 5.02371 5.12164 5.35630 5.49474 5.63016 5.65117 5.71314 5.82406 5.86840 6.05331 6.09744 6.14587 6.26533 6.39613 6.51056 6.61770 6.76000 6.88589 7.01794 7.29601 7.32192 7.42520 7.50237 7.84487 7.88329 7.92595 8.03791 8.35605 8.90310 9.05142 9.66741 11.14607 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.005919 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.224799 B = 4729.427111 C = 5844.666486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 H 0.129 0.871 4 C 0.207 3.793 5 N -0.425 5.425 6 N -0.745 5.745 7 C 0.518 3.482 8 O -0.484 6.484 9 C -0.121 4.121 10 C 0.078 3.922 11 H 0.074 0.926 12 C -0.493 4.493 13 H 0.051 0.949 14 C 0.077 3.923 15 N -0.880 5.880 16 Si 0.884 3.116 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.023 4.023 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.155 4.155 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.398 0.602 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.258 0.742 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 -8.773 3.388 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.146 0.854 4 C -0.113 4.113 5 N -0.102 5.102 6 N -0.403 5.403 7 C 0.305 3.695 8 O -0.354 6.354 9 C -0.161 4.161 10 C 0.059 3.941 11 H 0.092 0.908 12 C -0.530 4.530 13 H 0.070 0.930 14 C -0.126 4.126 15 N -0.517 5.517 16 Si 0.712 3.288 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.024 4.024 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.147 4.147 25 C -0.137 4.137 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.231 0.769 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.512 -8.491 4.610 9.983 hybrid contribution 0.872 0.602 -0.324 1.108 sum -1.640 -7.890 4.286 9.127 Atomic orbital electron populations 1.22163 0.92348 1.03138 1.04109 1.18189 0.94860 0.96648 0.76982 0.85391 1.29422 0.93096 0.93800 0.94942 1.81200 1.08795 1.08848 1.11343 1.46302 1.71211 1.14013 1.08800 1.21000 0.77162 0.87776 0.83549 1.90793 1.45802 1.15018 1.83779 1.21793 1.00786 0.99365 0.94155 1.17852 1.00836 0.90491 0.84899 0.90758 1.20726 1.07215 0.94188 1.30889 0.93036 1.24806 0.94903 0.98006 0.94865 1.69902 1.25121 1.20570 1.36065 0.86674 0.82356 0.82107 0.77634 1.19926 1.21244 1.21103 1.20739 0.92513 0.91200 0.97955 1.20961 0.96815 0.97990 0.97489 1.20983 0.98727 1.00901 0.94444 1.20805 0.95181 1.02896 0.98429 1.20992 0.96590 0.99325 0.97773 1.21098 1.00062 0.98979 0.93529 0.91848 0.91181 0.89544 0.76851 0.90273 0.91272 0.93172 0.86835 0.87677 0.87822 0.87640 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.44 37.16 0.35 -1.19 16 2 C 0.24 2.76 3.02 -70.72 -0.21 2.54 16 3 H 0.13 1.59 7.58 -51.93 -0.39 1.20 16 4 C 0.21 2.46 14.83 -20.76 -0.31 2.15 16 5 N -0.43 -5.95 18.54 42.15 0.78 -5.17 16 6 N -0.75 -9.38 5.06 -56.55 -0.29 -9.66 16 7 C 0.52 8.98 7.54 -10.99 -0.08 8.89 16 8 O -0.48 -10.65 14.65 5.56 0.08 -10.57 16 9 C -0.12 -2.10 4.94 -27.88 -0.14 -2.24 16 10 C 0.08 1.75 1.68 -92.92 -0.16 1.59 16 11 H 0.07 1.91 6.95 -51.93 -0.36 1.55 16 12 C -0.49 -12.60 6.38 -34.44 -0.22 -12.82 16 13 H 0.05 1.32 7.82 -52.48 -0.41 0.91 16 14 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 15 N -0.88 -24.95 12.85 55.43 0.71 -24.24 16 16 Si 0.88 21.53 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 21 C -0.11 -2.21 8.86 -39.58 -0.35 -2.56 16 22 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 23 C -0.15 -2.61 10.05 -39.59 -0.40 -3.01 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.12 -2.39 9.67 -39.59 -0.38 -2.78 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.40 3.99 8.58 -40.82 -0.35 3.63 16 30 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.11 2.11 7.75 -52.49 -0.41 1.70 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.10 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 2.32 7.95 -52.49 -0.42 1.91 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -31.08 328.12 -6.91 -37.99 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.84 Total: 3.97 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.29 Total: -13.77 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 1.21 Total: -39.06 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.08 -6.91 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355271286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.171 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds