Wall clock time and date at job start Mon Mar 30 2020 01:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.47199 * 109.47326 * 120.00236 * 2 1 3 5 5 N 2.60798 * 109.47333 * 120.00016 * 2 1 3 6 6 N 1.46502 * 109.47071 * 240.00294 * 2 1 3 7 7 C 1.34780 * 119.99881 * 84.99619 * 6 2 1 8 8 O 1.21277 * 120.00336 * 0.02562 * 7 6 2 9 9 C 1.50696 * 119.99721 * 179.97438 * 7 6 2 10 10 C 1.53004 * 109.46995 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47340 * 305.00063 * 10 9 7 12 12 C 1.50698 * 109.46807 * 65.00569 * 10 9 7 13 13 H 1.08005 * 120.00716 * 29.58176 * 12 10 9 14 14 C 1.37884 * 119.99687 * 209.57971 * 12 10 9 15 15 N 1.31510 * 119.99963 * 4.94492 * 14 12 10 16 16 Si 1.86793 * 120.00010 * 184.94295 * 14 12 10 17 17 H 1.48505 * 109.47101 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47502 * 120.00140 * 16 14 12 19 19 H 1.48499 * 109.47294 * 240.00493 * 16 14 12 20 20 C 1.50706 * 109.47016 * 185.00250 * 10 9 7 21 21 C 1.38236 * 119.99894 * 296.77000 * 20 10 9 22 22 C 1.38239 * 119.99833 * 179.79043 * 21 20 10 23 23 C 1.38228 * 119.99785 * 0.43797 * 22 21 20 24 24 C 1.38236 * 120.00333 * 359.81331 * 23 22 21 25 25 C 1.38227 * 119.99893 * 117.04382 * 20 10 9 26 26 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47127 * 299.99644 * 1 2 3 28 28 H 1.09000 * 109.47029 * 59.99641 * 1 2 3 29 29 H 0.96996 * 120.00175 * 264.99597 * 6 2 1 30 30 H 1.09002 * 109.47367 * 300.00448 * 9 7 6 31 31 H 1.09005 * 109.47316 * 60.00205 * 9 7 6 32 32 H 0.97000 * 120.00117 * 179.97438 * 15 14 12 33 33 H 1.07998 * 119.99922 * 359.97438 * 21 20 10 34 34 H 1.08002 * 120.00011 * 180.27452 * 22 21 20 35 35 H 1.08005 * 119.99887 * 179.83678 * 23 22 21 36 36 H 1.07998 * 120.00119 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00394 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2294 2.1294 6 7 2.0183 -0.6906 -1.1962 7 6 2.1469 -0.0181 -2.3572 8 8 1.8589 1.1587 -2.4115 9 6 2.6498 -0.7283 -3.5875 10 6 2.7017 0.2550 -4.7586 11 1 1.7220 0.7137 -4.8915 12 6 3.7227 1.3253 -4.4709 13 1 4.5806 1.1016 -3.8540 14 6 3.5618 2.5903 -4.9952 15 7 2.4705 2.8907 -5.6647 16 14 4.8940 3.8774 -4.7547 17 1 6.0125 3.2921 -3.9726 18 1 5.3968 4.3231 -6.0790 19 1 4.3322 5.0403 -4.0216 20 6 3.0863 -0.4813 -6.0160 21 6 4.3239 -1.0902 -6.1093 22 6 4.6750 -1.7692 -7.2611 23 6 3.7922 -1.8316 -8.3229 24 6 2.5568 -1.2183 -8.2316 25 6 2.2039 -0.5429 -7.0782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.2490 -1.6317 -1.1527 30 1 3.6491 -1.1202 -3.3979 31 1 1.9776 -1.5507 -3.8326 32 1 2.3571 3.7808 -6.0332 33 1 5.0151 -1.0380 -5.2812 34 1 5.6401 -2.2488 -7.3322 35 1 4.0676 -2.3599 -9.2238 36 1 1.8672 -1.2667 -9.0614 37 1 1.2387 -0.0637 -7.0069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355271286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:59 Heat of formation + Delta-G solvation = -8.382131 kcal Electronic energy + Delta-G solvation = -20162.055843 eV Core-core repulsion = 17096.415645 eV Total energy + Delta-G solvation = -3065.640199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80658 -39.74022 -38.12301 -36.03282 -35.45884 -33.39781 -31.89005 -31.44829 -29.98843 -27.43508 -25.51379 -24.20101 -23.08070 -21.65853 -20.93979 -19.40662 -18.39593 -17.80430 -17.11786 -16.58673 -16.30467 -16.08738 -15.61145 -15.38719 -15.15778 -14.72081 -14.26084 -14.14139 -13.92462 -13.88819 -13.65597 -13.51074 -13.25879 -13.05162 -12.88240 -12.83566 -12.48382 -12.41574 -12.26709 -11.78754 -11.63275 -11.23326 -10.92094 -10.55679 -10.35046 -10.09054 -9.49697 -9.15017 -7.98326 -6.00170 0.82444 0.87990 1.30621 1.40122 1.43049 1.50353 1.60213 2.01212 2.45539 2.50784 2.84621 3.23281 3.41370 4.06408 4.16636 4.30945 4.32435 4.40173 4.46893 4.61322 4.72189 4.76614 4.81698 4.93275 4.98425 5.06226 5.28231 5.29844 5.43103 5.50633 5.57002 5.74248 5.84992 5.88544 6.00779 6.23721 6.32526 6.47193 6.51762 6.71654 7.08476 7.58042 7.62631 9.11144 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.005919 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.224799 B = 4729.427111 C = 5844.666486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.245 3.755 3 H 0.120 0.880 4 C 0.233 3.767 5 N -0.453 5.453 6 N -0.726 5.726 7 C 0.522 3.478 8 O -0.539 6.539 9 C -0.117 4.117 10 C 0.080 3.920 11 H 0.030 0.970 12 C -0.482 4.482 13 H 0.048 0.952 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.929 3.071 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.291 1.291 20 C -0.045 4.045 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.130 4.130 25 C -0.142 4.142 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.414 0.586 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.253 0.747 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -11.001 3.239 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.137 3.863 3 H 0.138 0.862 4 C -0.086 4.086 5 N -0.130 5.130 6 N -0.383 5.383 7 C 0.310 3.690 8 O -0.413 6.413 9 C -0.157 4.157 10 C 0.061 3.939 11 H 0.049 0.951 12 C -0.520 4.520 13 H 0.066 0.934 14 C -0.174 4.174 15 N -0.555 5.555 16 Si 0.757 3.243 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.218 1.218 20 C -0.046 4.046 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.167 4.167 24 C -0.148 4.148 25 C -0.160 4.160 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.251 0.749 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.379 -10.779 4.498 11.761 hybrid contribution 0.516 1.176 -0.282 1.315 sum -0.862 -9.603 4.217 10.524 Atomic orbital electron populations 1.22119 0.90598 1.04249 1.04188 1.18242 0.96063 0.95892 0.76100 0.86243 1.29212 0.92118 0.92888 0.94369 1.81242 1.09788 1.09821 1.12187 1.45961 1.69819 1.14610 1.07945 1.20942 0.76436 0.87025 0.84591 1.90785 1.48490 1.17307 1.84738 1.21683 1.02596 0.98864 0.92571 1.17650 0.97513 0.91046 0.87718 0.95146 1.21033 1.07070 0.94879 1.29030 0.93401 1.25436 0.96402 0.99973 0.95625 1.70039 1.26769 1.20469 1.38202 0.85951 0.80753 0.80231 0.77362 1.18983 1.21277 1.21779 1.20590 0.93828 0.92814 0.97374 1.21062 0.96044 0.98554 0.98801 1.21365 1.00092 0.99725 0.93465 1.21250 0.94191 1.01781 0.99498 1.21285 0.97747 0.98384 0.97382 1.21123 0.99747 1.00350 0.94813 0.90219 0.89236 0.91351 0.74896 0.88484 0.88484 0.93844 0.86480 0.84389 0.84172 0.85210 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.44 71.98 0.68 -2.07 16 2 C 0.25 5.29 3.02 43.18 0.13 5.42 16 3 H 0.12 2.93 7.58 -2.39 -0.02 2.91 16 4 C 0.23 5.14 14.83 89.44 1.33 6.47 16 5 N -0.45 -11.95 18.54 20.01 0.37 -11.58 16 6 N -0.73 -17.26 5.06 -451.21 -2.28 -19.54 16 7 C 0.52 18.03 7.54 87.66 0.66 18.69 16 8 O -0.54 -24.46 14.65 -3.02 -0.04 -24.50 16 9 C -0.12 -4.01 4.94 29.85 0.15 -3.87 16 10 C 0.08 3.66 1.68 -12.28 -0.02 3.64 16 11 H 0.03 1.65 6.95 -2.39 -0.02 1.63 16 12 C -0.48 -25.11 6.38 25.60 0.16 -24.95 16 13 H 0.05 2.46 7.82 -2.91 -0.02 2.44 16 14 C 0.02 1.36 5.45 84.66 0.46 1.82 16 15 N -0.91 -54.21 12.85 21.45 0.28 -53.94 16 16 Si 0.93 45.00 29.54 68.60 2.03 47.03 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 20 C -0.05 -1.91 4.77 -19.87 -0.09 -2.01 16 21 C -0.13 -4.68 8.86 22.27 0.20 -4.48 16 22 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 23 C -0.15 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 25 C -0.14 -5.79 9.67 22.27 0.22 -5.58 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.41 7.31 8.58 -92.71 -0.80 6.51 16 30 H 0.10 2.97 7.76 -2.39 -0.02 2.95 16 31 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.12 4.14 7.75 -2.91 -0.02 4.12 16 34 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.10 4.15 7.95 -2.91 -0.02 4.13 16 Total: -1.00 -69.68 328.12 5.17 -64.51 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.29 Total: 17.14 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.54 Total: -19.11 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.64 Total: -85.07 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.68 5.17 -64.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355271286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.131 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds