Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00186 * 2 1 4 4 C 1.47206 * 109.47299 * 269.99785 * 3 2 1 5 5 N 3.39040 * 110.13916 * 309.42461 * 2 1 3 6 6 C 1.34776 * 120.00007 * 179.97438 * 2 1 3 7 7 O 1.21277 * 120.00168 * 180.02562 * 6 2 1 8 8 C 1.50703 * 119.99818 * 0.28052 * 6 2 1 9 9 C 1.53003 * 109.47252 * 179.72061 * 8 6 2 10 10 H 1.08997 * 109.47166 * 304.99953 * 9 8 6 11 11 C 1.50704 * 109.46825 * 64.99879 * 9 8 6 12 12 H 1.07999 * 119.99786 * 234.67752 * 11 9 8 13 13 C 1.37868 * 120.00055 * 54.68055 * 11 9 8 14 14 N 1.31521 * 120.00028 * 4.87177 * 13 11 9 15 15 Si 1.86805 * 120.00249 * 184.86788 * 13 11 9 16 16 H 1.48501 * 109.46503 * 60.00163 * 15 13 11 17 17 H 1.48495 * 109.47343 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00295 * 15 13 11 19 19 C 1.50694 * 109.47339 * 184.99957 * 9 8 6 20 20 C 1.38232 * 120.00065 * 151.48671 * 19 9 8 21 21 C 1.38239 * 119.99732 * 179.78882 * 20 19 9 22 22 C 1.38233 * 120.00363 * 0.43809 * 21 20 19 23 23 C 1.38236 * 119.99857 * 359.81682 * 22 21 20 24 24 C 1.38235 * 120.00033 * 359.97432 * 23 22 21 25 25 H 1.09002 * 109.47076 * 270.00434 * 1 2 3 26 26 H 1.08999 * 109.46536 * 30.00312 * 1 2 3 27 27 H 1.09003 * 109.47105 * 150.00212 * 1 2 3 28 28 H 1.09001 * 109.47350 * 29.99941 * 3 2 1 29 29 H 1.09000 * 109.47359 * 149.99705 * 3 2 1 30 30 H 1.08997 * 109.47212 * 299.71952 * 8 6 2 31 31 H 1.08995 * 109.47320 * 59.72215 * 8 6 2 32 32 H 0.97002 * 119.99696 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.00387 * 359.97438 * 20 19 9 34 34 H 1.08006 * 119.99779 * 180.27499 * 21 20 19 35 35 H 1.07997 * 120.00387 * 179.83226 * 22 21 20 36 36 H 1.07997 * 120.00478 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.00595 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4429 1.6936 -1.3879 5 7 2.6323 2.0215 -2.4588 6 6 2.1389 -1.1672 0.0005 7 8 3.3517 -1.1672 0.0010 8 6 1.3854 -2.4723 -0.0053 9 6 2.3796 -3.6353 -0.0104 10 1 3.0637 -3.5247 -0.8517 11 6 3.1624 -3.6326 1.2773 12 1 4.2420 -3.6170 1.2529 13 6 2.5003 -3.6499 2.4865 14 7 1.1906 -3.7655 2.5176 15 14 3.4635 -3.5093 4.0809 16 1 4.2078 -2.2244 4.0978 17 1 2.5256 -3.5527 5.2314 18 1 4.4228 -4.6384 4.1809 19 6 1.6302 -4.9362 -0.1400 20 6 2.2343 -6.0250 -0.7404 21 6 1.5484 -7.2197 -0.8553 22 6 0.2552 -7.3230 -0.3781 23 6 -0.3508 -6.2326 0.2175 24 6 0.3365 -5.0392 0.3364 25 1 -0.3633 0.0001 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5139 30 1 0.7587 -2.5340 0.8844 31 1 0.7587 -2.5261 -0.8955 32 1 0.7248 -3.7774 3.3684 33 1 3.2432 -5.9432 -1.1169 34 1 2.0220 -8.0717 -1.3204 35 1 -0.2816 -8.2555 -0.4703 36 1 -1.3613 -6.3131 0.5901 37 1 -0.1367 -4.1874 0.8021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355453039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = 26.869966 kcal Electronic energy + Delta-G solvation = -20757.755377 eV Core-core repulsion = 17693.643824 eV Total energy + Delta-G solvation = -3064.111553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44865 -38.15975 -36.49350 -34.91579 -34.24255 -31.15669 -29.92211 -29.50194 -27.96088 -26.31666 -25.22010 -22.59821 -21.43689 -20.04497 -18.77641 -17.59085 -16.72045 -16.28790 -15.64860 -15.53095 -15.06635 -14.42056 -13.98915 -13.76380 -13.69347 -13.20860 -12.95177 -12.62067 -12.48289 -12.42446 -12.24111 -12.11928 -11.67393 -11.51970 -11.47430 -11.33578 -10.91690 -10.83439 -10.48307 -10.18912 -9.96827 -9.33706 -9.24569 -8.91234 -8.55002 -8.42599 -7.82014 -7.46173 -6.00935 -4.11000 2.47854 2.56013 2.57769 2.87865 3.30690 3.33693 3.40171 3.42432 3.67903 4.21665 4.40608 4.95673 5.06664 5.21323 5.28453 5.43276 5.69583 5.78265 5.80377 5.89740 5.91844 6.00382 6.30955 6.41345 6.53840 6.65430 6.73717 6.75702 7.08144 7.12890 7.23927 7.42565 7.52008 7.62496 7.64579 7.82702 7.90292 8.08193 8.15621 8.31101 8.84641 8.96359 9.52374 10.93059 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.006851 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.402507 B = 4085.817378 C = 5021.665379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.631 5.631 3 C 0.208 3.792 4 C 0.198 3.802 5 N -0.438 5.438 6 C 0.527 3.473 7 O -0.515 6.515 8 C -0.135 4.135 9 C 0.086 3.914 10 H 0.037 0.963 11 C -0.472 4.472 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.028 4.028 20 C -0.132 4.132 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.069 4.069 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.055 0.945 32 H 0.261 0.739 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 4.284 -1.597 7.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.369 5.369 3 C 0.081 3.919 4 C -0.122 4.122 5 N -0.116 5.116 6 C 0.318 3.682 7 O -0.387 6.387 8 C -0.175 4.175 9 C 0.067 3.933 10 H 0.055 0.945 11 C -0.509 4.509 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.028 4.028 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.087 4.087 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.257 4.726 -3.022 7.688 hybrid contribution 0.340 -0.208 1.542 1.592 sum -4.918 4.518 -1.480 6.840 Atomic orbital electron populations 1.21783 0.79150 1.02884 1.02197 1.48099 1.07047 1.04625 1.77141 1.18757 1.01232 0.87537 0.84352 1.30154 0.92877 0.93115 0.96012 1.81122 1.09147 1.09080 1.12281 1.21400 0.88396 0.84990 0.73464 1.90638 1.14265 1.86693 1.47154 1.21989 1.00645 0.91069 1.03757 1.17658 0.91964 0.86591 0.97077 0.94478 1.20948 0.93096 1.47536 0.89349 0.92278 1.24879 0.95026 0.95105 0.98892 1.69661 1.06729 1.50942 1.25596 0.86646 0.79868 0.78765 0.82773 1.20296 1.21400 1.20435 1.20319 0.93124 0.97041 0.92337 1.20898 0.99159 0.93354 1.01559 1.20802 0.95304 0.97196 1.02633 1.20769 0.95795 0.97986 1.02653 1.21044 0.99328 0.94409 1.01328 1.21348 0.94377 0.97853 0.95137 0.92075 0.91965 0.90391 0.86552 0.85665 0.84615 0.92701 0.92832 0.87681 0.88103 0.88301 0.88064 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.25 59.85 0.61 1.53 16 2 N -0.63 -9.26 2.83 -184.93 -0.52 -9.78 16 3 C 0.21 2.47 5.88 -6.83 -0.04 2.43 16 4 C 0.20 2.84 15.77 -20.76 -0.33 2.51 16 5 N -0.44 -7.36 18.54 42.15 0.78 -6.57 16 6 C 0.53 10.34 7.42 -10.98 -0.08 10.26 16 7 O -0.51 -11.93 14.56 5.56 0.08 -11.85 16 8 C -0.13 -2.71 2.63 -27.88 -0.07 -2.78 16 9 C 0.09 2.00 1.97 -92.92 -0.18 1.82 16 10 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 11 C -0.47 -12.19 7.27 -34.44 -0.25 -12.44 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.06 1.53 5.12 -17.82 -0.09 1.44 16 14 N -0.89 -21.55 7.99 55.43 0.44 -21.10 16 15 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 20 C -0.13 -2.76 9.71 -39.58 -0.38 -3.15 16 21 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 22 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.07 -1.45 7.46 -39.58 -0.30 -1.74 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 28 H 0.12 0.85 8.07 -51.93 -0.42 0.44 16 29 H 0.13 1.58 7.42 -51.93 -0.39 1.19 16 30 H 0.14 2.84 4.67 -51.93 -0.24 2.60 16 31 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 32 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 33 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.95 5.18 -52.49 -0.27 2.68 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -30.04 314.72 -6.82 -36.86 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.53 Total: 2.79 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.80 Total: -10.68 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.70 Total: -37.46 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.04 -6.82 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355453039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.733 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds