Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47254 * 2 1 4 4 C 1.35479 * 124.78913 * 264.95956 * 3 2 1 5 5 C 1.36372 * 109.77178 * 180.02562 * 4 3 2 6 6 C 1.46907 * 126.76620 * 180.02562 * 5 4 3 7 7 O 1.21675 * 119.99898 * 179.97438 * 6 5 4 8 8 N 1.34771 * 120.00327 * 359.97189 * 6 5 4 9 9 C 1.46503 * 120.00413 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47541 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99643 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99891 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00440 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47130 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47280 * 119.99627 * 14 12 10 17 17 H 1.48500 * 109.46900 * 240.00049 * 14 12 10 18 18 C 1.47439 * 106.46251 * 0.02562 * 5 4 3 19 19 C 1.39277 * 134.00745 * 179.97438 * 18 5 4 20 20 C 1.37755 * 119.67283 * 180.02562 * 19 18 5 21 21 C 1.38749 * 120.29881 * 0.02562 * 20 19 18 22 22 C 1.37759 * 120.63982 * 359.97438 * 21 20 19 23 23 C 1.37962 * 124.78809 * 85.00080 * 3 2 1 24 24 H 1.09003 * 109.47047 * 59.99728 * 1 2 3 25 25 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46780 * 300.00059 * 1 2 3 27 27 H 1.08998 * 109.47042 * 240.00333 * 2 1 3 28 28 H 1.08993 * 109.47480 * 119.99953 * 2 1 3 29 29 H 1.08003 * 125.10963 * 0.06236 * 4 3 2 30 30 H 0.97004 * 120.00159 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.46866 * 300.00388 * 9 8 6 32 32 H 1.09005 * 109.46860 * 59.99913 * 9 8 6 33 33 H 0.96996 * 120.00394 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.15801 * 0.31769 * 19 18 5 35 35 H 1.07998 * 119.84737 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.68010 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.03543 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3682 2.0774 -1.1083 5 6 2.7785 3.3293 -0.7563 6 6 3.2382 4.3910 -1.6616 7 8 3.5776 5.4694 -1.2118 8 7 3.2842 4.1706 -2.9904 9 6 3.7432 5.2291 -3.8932 10 6 3.6989 4.7312 -5.3148 11 1 3.3621 3.7269 -5.5249 12 6 4.0883 5.5579 -6.3472 13 7 4.4980 6.7811 -6.0914 14 14 4.0327 4.9409 -8.1096 15 1 3.5379 3.5410 -8.1285 16 1 3.1201 5.7998 -8.9062 17 1 5.3966 4.9913 -8.6949 18 6 2.6698 3.4072 0.7120 19 6 2.9350 4.4015 1.6505 20 6 2.7225 4.1507 2.9883 21 6 2.2471 2.9145 3.4019 22 6 1.9806 1.9221 2.4844 23 6 2.1876 2.1562 1.1287 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.3275 1.6980 -2.1187 30 1 3.0133 3.3109 -3.3491 31 1 3.0940 6.0990 -3.7928 32 1 4.7655 5.5072 -3.6369 33 1 4.7723 7.3626 -6.8177 34 1 3.3009 5.3659 1.3306 35 1 2.9268 4.9198 3.7184 36 1 2.0845 2.7286 4.4532 37 1 1.6113 0.9632 2.8172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356300570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -8.957719 kcal Electronic energy + Delta-G solvation = -19876.808596 eV Core-core repulsion = 16811.143438 eV Total energy + Delta-G solvation = -3065.665158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50186 -40.04700 -38.13426 -36.09828 -34.85094 -34.24953 -31.91639 -30.39794 -30.05310 -28.70230 -25.46490 -24.44036 -23.80656 -22.82453 -21.80478 -20.78648 -19.08329 -18.01793 -17.61729 -16.90168 -16.76261 -16.40398 -16.30848 -15.83872 -15.64951 -15.19484 -14.99253 -14.42604 -14.38592 -13.98207 -13.94577 -13.63841 -13.49537 -12.98593 -12.87105 -12.74781 -12.56965 -12.20943 -12.20529 -12.08328 -11.87358 -11.44641 -10.83037 -10.80967 -10.62118 -9.84292 -9.22742 -8.65051 -8.27811 -6.45005 0.02943 0.59783 1.05613 1.43864 1.45992 1.59213 1.73131 2.34206 2.48695 2.66058 2.99711 3.07426 3.67208 3.69764 3.82313 4.11819 4.17237 4.22563 4.29572 4.44512 4.50753 4.63343 4.71612 4.77744 4.89240 4.90065 5.11139 5.19012 5.24410 5.27666 5.47994 5.50153 5.59135 5.68633 5.74908 5.77787 5.85355 6.16346 6.29555 6.65817 6.97653 7.24417 7.53888 8.85158 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.004153 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.897092 B = 6740.416625 C = 7800.851645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.460 5.460 4 C 0.137 3.863 5 C -0.271 4.271 6 C 0.568 3.432 7 O -0.612 6.612 8 N -0.703 5.703 9 C 0.268 3.732 10 C -0.553 4.553 11 H 0.088 0.912 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.989 3.011 15 H -0.249 1.249 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.097 4.097 19 C -0.104 4.104 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.117 4.117 23 C 0.078 3.922 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.211 0.789 30 H 0.406 0.594 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.269 0.731 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -20.222 15.557 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.141 5.141 4 C 0.003 3.997 5 C -0.281 4.281 6 C 0.359 3.641 7 O -0.496 6.496 8 N -0.352 5.352 9 C 0.145 3.855 10 C -0.591 4.591 11 H 0.106 0.894 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.811 3.189 15 H -0.173 1.173 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.159 4.159 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.026 4.026 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.228 0.772 30 H 0.242 0.758 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.181 0.819 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.791 -19.665 15.773 26.698 hybrid contribution 0.295 0.673 -1.255 1.454 sum -8.496 -18.992 14.518 25.370 Atomic orbital electron populations 1.22186 0.93778 1.04282 1.02406 1.22287 0.95944 0.77458 1.06791 1.44098 1.53134 1.13390 1.03447 1.22477 0.94167 0.89769 0.93293 1.20031 1.19113 0.96116 0.92884 1.17949 0.77100 0.86797 0.82297 1.90671 1.52829 1.28514 1.77583 1.45948 1.65954 1.17888 1.05439 1.18546 0.92251 0.86162 0.88504 1.21638 1.45884 1.01084 0.90507 0.89442 1.26124 0.93869 0.94654 1.05123 1.70162 1.43975 1.08546 1.34496 0.85058 0.77824 0.79160 0.76820 1.17258 1.20508 1.20501 1.19112 1.03973 0.95303 0.91772 1.20721 1.00009 0.97969 0.93574 1.21234 1.01468 0.99001 0.94149 1.21224 0.98298 0.91873 1.00680 1.20406 1.03898 1.01602 0.87754 1.18470 1.04011 0.90248 0.89863 0.92805 0.88109 0.92807 0.86373 0.87311 0.77246 0.75818 0.99740 0.99710 0.92266 0.88485 0.84082 0.81891 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 71.98 0.74 -0.79 16 2 C 0.09 0.93 6.67 86.38 0.58 1.51 16 3 N -0.46 -9.48 2.74 -515.30 -1.41 -10.89 16 4 C 0.14 3.46 10.75 83.69 0.90 4.36 16 5 C -0.27 -10.05 6.27 -19.02 -0.12 -10.17 16 6 C 0.57 27.13 7.80 86.51 0.67 27.80 16 7 O -0.61 -35.27 16.16 -4.27 -0.07 -35.34 16 8 N -0.70 -32.60 5.54 -470.59 -2.61 -35.21 16 9 C 0.27 15.58 5.43 85.63 0.46 16.05 16 10 C -0.55 -30.81 9.28 25.60 0.24 -30.57 16 11 H 0.09 4.32 7.60 -2.91 -0.02 4.30 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 14 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 15 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.10 -3.44 6.27 -20.08 -0.13 -3.56 16 19 C -0.10 -3.66 9.85 22.41 0.22 -3.44 16 20 C -0.14 -3.56 10.03 22.28 0.22 -3.33 16 21 C -0.10 -1.95 10.01 22.28 0.22 -1.73 16 22 C -0.12 -2.24 9.97 22.37 0.22 -2.02 16 23 C 0.08 2.01 6.79 38.92 0.26 2.28 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.12 0.67 8.11 -2.39 -0.02 0.65 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.21 3.63 7.38 -2.91 -0.02 3.61 16 30 H 0.41 15.03 7.20 -92.71 -0.67 14.37 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 32 H -0.02 -0.99 8.14 -2.38 -0.02 -1.00 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 34 H 0.10 3.98 7.45 -2.91 -0.02 3.96 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -84.08 322.46 3.60 -80.48 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.41 Total: 16.77 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.96 Total: -3.07 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -3.73 Total: -103.54 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -84.08 3.60 -80.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356300570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.523 kcal (2) G-P(sol) polarization free energy of solvation -84.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds