Wall clock time and date at job start Mon Mar 30 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47383 * 119.99791 * 2 1 3 5 5 O 1.21284 * 119.99832 * 119.99735 * 4 2 1 6 6 N 1.34776 * 120.00448 * 300.00188 * 4 2 1 7 7 C 1.46503 * 119.99595 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00250 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46952 * 90.00424 * 8 6 4 10 10 H 1.07999 * 120.00156 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99698 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00290 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99950 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47124 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47334 * 120.00037 * 13 11 9 16 16 H 1.48505 * 109.47377 * 239.99791 * 13 11 9 17 17 C 1.50702 * 109.47316 * 240.00158 * 2 1 3 18 18 C 1.38382 * 119.91983 * 299.97804 * 17 2 1 19 19 C 1.38347 * 120.30536 * 180.02562 * 18 17 2 20 20 C 1.37971 * 120.14496 * 359.97438 * 19 18 17 21 21 C 1.39610 * 119.84901 * 359.76286 * 20 19 18 22 22 C 1.43200 * 120.15093 * 180.25306 * 21 20 19 23 23 N 5.95826 * 122.75000 * 276.25324 * 2 1 3 24 24 C 1.37925 * 119.92601 * 119.99598 * 17 2 1 25 25 H 1.09001 * 109.47267 * 299.99429 * 1 2 3 26 26 H 1.08997 * 109.47746 * 60.00261 * 1 2 3 27 27 H 1.09005 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47302 * 89.99577 * 7 6 4 29 29 H 1.09002 * 109.46953 * 209.99815 * 7 6 4 30 30 H 1.08999 * 109.47147 * 329.99300 * 7 6 4 31 31 H 1.09005 * 109.46935 * 210.00178 * 8 6 4 32 32 H 1.09000 * 109.46998 * 329.99547 * 8 6 4 33 33 H 0.97000 * 120.00160 * 180.02562 * 12 11 9 34 34 H 1.07997 * 119.85139 * 0.04081 * 18 17 2 35 35 H 1.07993 * 119.92925 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.07199 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07400 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4546 7 6 0.8640 0.9408 2.5890 8 6 2.1948 -0.9408 3.6507 9 6 3.5224 -0.3578 4.0611 10 1 3.9592 0.4467 3.4880 11 6 4.1799 -0.8520 5.1676 12 7 3.6482 -1.8320 5.8652 13 14 5.8259 -0.1298 5.6759 14 1 6.2037 0.9532 4.7328 15 1 5.7204 0.4240 7.0498 16 1 6.8625 -1.1929 5.6491 17 6 2.0323 -0.7104 -1.2305 18 6 1.6974 -2.0354 -1.4476 19 6 2.1547 -2.6954 -2.5743 20 6 2.9482 -2.0353 -3.4898 21 6 3.2853 -0.6969 -3.2797 22 6 4.1040 -0.0040 -4.2285 23 7 4.7532 0.5458 -4.9813 24 6 2.8251 -0.0385 -2.1374 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.1838 0.6425 2.6225 29 1 1.1217 1.4664 3.5085 30 1 1.0272 1.5996 1.7361 31 1 1.4767 -0.8153 4.4611 32 1 2.3154 -2.0021 3.4334 33 1 4.1106 -2.1794 6.6439 34 1 1.0760 -2.5566 -0.7345 35 1 1.8899 -3.7296 -2.7375 36 1 3.3041 -2.5516 -4.3691 37 1 3.0856 0.9956 -1.9667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359834702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:36 Heat of formation + Delta-G solvation = 20.070368 kcal Electronic energy + Delta-G solvation = -20097.638479 eV Core-core repulsion = 17033.232073 eV Total energy + Delta-G solvation = -3064.406406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18399 -38.68978 -36.52118 -34.91310 -34.13309 -32.52917 -31.32603 -29.77733 -27.62069 -26.17265 -24.58841 -23.79558 -22.96802 -21.52024 -19.12433 -17.70387 -16.75226 -16.43987 -16.24271 -15.51193 -15.27295 -14.63892 -14.53111 -14.11918 -13.99935 -13.56081 -13.23794 -13.05815 -13.03952 -12.78431 -12.37147 -12.30831 -12.17518 -11.80179 -11.71124 -11.51949 -11.18622 -11.14343 -10.87296 -10.84416 -10.60743 -10.17882 -9.63393 -9.10882 -8.86185 -8.73183 -8.46157 -7.68439 -6.07076 -4.11757 0.77101 1.26314 2.57225 2.90257 3.28262 3.34090 3.37068 3.41605 3.69860 3.83791 4.01881 4.43193 4.55608 4.76084 4.92015 5.06862 5.16467 5.23640 5.26286 5.28552 5.42019 5.55834 5.68102 5.73983 5.81517 5.85858 5.91657 6.03521 6.17105 6.23740 6.32665 6.52634 6.76271 7.01747 7.39039 7.40269 7.49750 7.89397 8.20306 8.36476 8.86982 9.04275 9.53764 11.00999 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.004636 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.628572 B = 6037.748639 C = 6639.821974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 H 0.101 0.899 4 C 0.509 3.491 5 O -0.533 6.533 6 N -0.600 5.600 7 C 0.080 3.920 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.057 4.057 18 C -0.049 4.049 19 C -0.122 4.122 20 C -0.073 4.073 21 C -0.040 4.040 22 C 0.263 3.737 23 N -0.430 5.430 24 C -0.063 4.063 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 2.695 -13.750 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.119 0.881 4 C 0.294 3.706 5 O -0.410 6.410 6 N -0.332 5.332 7 C -0.064 4.064 8 C 0.126 3.874 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.058 4.058 18 C -0.068 4.068 19 C -0.140 4.140 20 C -0.094 4.094 21 C -0.043 4.043 22 C -0.052 4.052 23 N -0.105 5.105 24 C -0.084 4.084 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.030 2.911 -14.782 17.072 hybrid contribution 0.798 0.243 0.815 1.166 sum -7.232 3.154 -13.967 16.042 Atomic orbital electron populations 1.22052 0.92278 1.03228 1.03358 1.20360 0.97664 1.00313 0.91509 0.88095 1.20083 0.81162 0.85201 0.84129 1.90695 1.37548 1.26654 1.86074 1.48109 1.49603 1.28202 1.07253 1.21809 0.93792 0.88200 1.02570 1.19298 0.94215 0.93701 0.80139 1.21466 1.04819 1.19054 1.11167 0.92439 1.24925 0.97916 0.94932 0.96274 1.69936 1.38959 1.26095 1.18377 0.86462 0.83793 0.79088 0.78195 1.19820 1.20949 1.20855 1.19298 0.97403 0.94464 0.94623 1.21238 0.96687 0.93404 0.95467 1.21050 0.98433 1.00261 0.94299 1.21103 0.96687 0.92176 0.99395 1.15872 1.01014 0.93743 0.93682 1.25765 0.93112 0.93297 0.93062 1.81229 1.10187 1.08748 1.10354 1.21002 0.95443 0.99944 0.91977 0.90340 0.91722 0.91954 0.93315 0.90859 0.92221 0.94994 0.93804 0.92758 0.85294 0.84995 0.85324 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.64 37.15 0.32 -1.20 16 2 C -0.08 -1.01 2.09 -92.93 -0.19 -1.20 16 3 H 0.10 1.16 7.13 -51.93 -0.37 0.79 16 4 C 0.51 9.67 6.94 -10.99 -0.08 9.59 16 5 O -0.53 -12.43 14.68 5.55 0.08 -12.35 16 6 N -0.60 -11.84 2.86 -182.95 -0.52 -12.37 16 7 C 0.08 1.15 8.80 59.85 0.53 1.67 16 8 C 0.25 6.18 5.16 -5.19 -0.03 6.16 16 9 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 13 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.06 -0.74 4.39 -104.68 -0.46 -1.20 16 18 C -0.05 -0.61 7.92 -39.49 -0.31 -0.92 16 19 C -0.12 -1.27 10.03 -39.64 -0.40 -1.66 16 20 C -0.07 -0.74 9.76 -39.17 -0.38 -1.12 16 21 C -0.04 -0.46 5.73 -106.93 -0.61 -1.07 16 22 C 0.26 3.32 15.33 -22.47 -0.34 2.98 16 23 N -0.43 -6.26 18.54 41.84 0.78 -5.49 16 24 C -0.06 -0.74 9.38 -39.17 -0.37 -1.11 16 25 H 0.08 0.74 4.53 -51.93 -0.24 0.50 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 28 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 29 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.06 0.68 6.01 -51.93 -0.31 0.36 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.13 1.62 7.50 -52.49 -0.39 1.22 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.33 7.94 -52.49 -0.42 0.92 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -33.42 320.62 -6.37 -39.79 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.51 Total: -3.24 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.75 Total: -2.39 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.99 Total: -43.31 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.42 -6.37 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359834702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds