Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47383 * 119.99791 * 2 1 3 5 5 O 1.21284 * 119.99832 * 119.99735 * 4 2 1 6 6 N 1.34776 * 120.00448 * 300.00188 * 4 2 1 7 7 C 1.46503 * 119.99595 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00250 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46952 * 90.00424 * 8 6 4 10 10 H 1.07999 * 120.00156 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99698 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00290 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99950 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47124 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47334 * 120.00037 * 13 11 9 16 16 H 1.48505 * 109.47377 * 239.99791 * 13 11 9 17 17 C 1.50702 * 109.47316 * 240.00158 * 2 1 3 18 18 C 1.38382 * 119.91983 * 299.97804 * 17 2 1 19 19 C 1.38347 * 120.30536 * 180.02562 * 18 17 2 20 20 C 1.37971 * 120.14496 * 359.97438 * 19 18 17 21 21 C 1.39610 * 119.84901 * 359.76286 * 20 19 18 22 22 C 1.43200 * 120.15093 * 180.25306 * 21 20 19 23 23 N 5.95826 * 122.75000 * 276.25324 * 2 1 3 24 24 C 1.37925 * 119.92601 * 119.99598 * 17 2 1 25 25 H 1.09001 * 109.47267 * 299.99429 * 1 2 3 26 26 H 1.08997 * 109.47746 * 60.00261 * 1 2 3 27 27 H 1.09005 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47302 * 89.99577 * 7 6 4 29 29 H 1.09002 * 109.46953 * 209.99815 * 7 6 4 30 30 H 1.08999 * 109.47147 * 329.99300 * 7 6 4 31 31 H 1.09005 * 109.46935 * 210.00178 * 8 6 4 32 32 H 1.09000 * 109.46998 * 329.99547 * 8 6 4 33 33 H 0.97000 * 120.00160 * 180.02562 * 12 11 9 34 34 H 1.07997 * 119.85139 * 0.04081 * 18 17 2 35 35 H 1.07993 * 119.92925 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.07199 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07400 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4546 7 6 0.8640 0.9408 2.5890 8 6 2.1948 -0.9408 3.6507 9 6 3.5224 -0.3578 4.0611 10 1 3.9592 0.4467 3.4880 11 6 4.1799 -0.8520 5.1676 12 7 3.6482 -1.8320 5.8652 13 14 5.8259 -0.1298 5.6759 14 1 6.2037 0.9532 4.7328 15 1 5.7204 0.4240 7.0498 16 1 6.8625 -1.1929 5.6491 17 6 2.0323 -0.7104 -1.2305 18 6 1.6974 -2.0354 -1.4476 19 6 2.1547 -2.6954 -2.5743 20 6 2.9482 -2.0353 -3.4898 21 6 3.2853 -0.6969 -3.2797 22 6 4.1040 -0.0040 -4.2285 23 7 4.7532 0.5458 -4.9813 24 6 2.8251 -0.0385 -2.1374 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.1838 0.6425 2.6225 29 1 1.1217 1.4664 3.5085 30 1 1.0272 1.5996 1.7361 31 1 1.4767 -0.8153 4.4611 32 1 2.3154 -2.0021 3.4334 33 1 4.1106 -2.1794 6.6439 34 1 1.0760 -2.5566 -0.7345 35 1 1.8899 -3.7296 -2.7375 36 1 3.3041 -2.5516 -4.3691 37 1 3.0856 0.9956 -1.9667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359834702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = 0.054103 kcal Electronic energy + Delta-G solvation = -20098.506450 eV Core-core repulsion = 17033.232073 eV Total energy + Delta-G solvation = -3065.274376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33665 -39.89373 -37.57726 -36.54298 -35.35387 -34.42403 -32.21347 -30.87427 -29.32020 -27.52107 -25.81847 -25.00341 -24.28844 -22.62866 -20.42324 -18.84472 -18.67723 -17.82711 -17.19137 -17.05856 -16.42948 -16.25187 -15.87221 -15.22637 -15.08143 -14.63205 -14.48943 -14.22704 -14.14577 -14.04146 -13.80311 -13.51563 -13.32835 -13.23329 -12.89929 -12.82015 -12.68746 -12.53710 -12.34060 -12.18138 -12.08750 -11.77346 -11.61012 -10.63358 -10.44522 -9.84901 -9.70625 -9.34225 -8.20969 -6.35219 -0.14086 0.39692 1.36463 1.39041 1.50175 1.58314 1.90728 1.94800 2.34635 2.50158 2.85669 2.96003 3.08798 3.58842 3.82020 3.98366 4.16911 4.27471 4.28875 4.37464 4.51354 4.59229 4.72943 4.81993 4.90448 4.99337 5.00917 5.08563 5.10202 5.27210 5.31136 5.37561 5.46268 5.59497 5.63261 5.88282 5.90651 6.09149 6.41716 6.73233 6.86115 7.31178 7.55180 8.85797 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.004636 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.628572 B = 6037.748639 C = 6639.821974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 H 0.123 0.877 4 C 0.499 3.501 5 O -0.587 6.587 6 N -0.609 5.609 7 C 0.074 3.926 8 C 0.260 3.740 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.269 1.269 16 H -0.283 1.283 17 C -0.076 4.076 18 C -0.063 4.063 19 C -0.122 4.122 20 C -0.064 4.064 21 C -0.048 4.048 22 C 0.284 3.716 23 N -0.466 5.466 24 C -0.064 4.064 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.023 0.977 32 H -0.001 1.001 33 H 0.266 0.734 34 H 0.119 0.881 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 4.050 -14.999 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 H 0.141 0.859 4 C 0.288 3.712 5 O -0.467 6.467 6 N -0.340 5.340 7 C -0.068 4.068 8 C 0.139 3.861 9 C -0.579 4.579 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.209 1.209 17 C -0.077 4.077 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.084 4.084 21 C -0.051 4.051 22 C -0.030 4.030 23 N -0.142 5.142 24 C -0.085 4.085 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.481 4.309 -16.044 18.653 hybrid contribution 0.875 -0.247 1.192 1.500 sum -7.606 4.061 -14.852 17.173 Atomic orbital electron populations 1.22071 0.89686 1.03448 1.05203 1.20332 0.99651 1.00264 0.88166 0.85902 1.21188 0.80005 0.84688 0.85317 1.90656 1.39945 1.29166 1.86984 1.48114 1.50260 1.29514 1.06075 1.22134 0.94331 0.86618 1.03711 1.18724 0.93492 0.91787 0.82131 1.21755 1.05963 1.18939 1.11244 0.92971 1.25799 1.01565 0.95265 0.96351 1.70046 1.40569 1.27271 1.18899 0.85434 0.79084 0.78289 0.78396 1.19256 1.19443 1.20919 1.19350 0.98521 0.94881 0.94900 1.21357 0.97071 0.93648 0.96102 1.21320 0.97834 1.01342 0.93443 1.21406 0.95515 0.91612 0.99882 1.15947 1.01307 0.94331 0.93533 1.25839 0.92337 0.92437 0.92412 1.81253 1.11505 1.09888 1.11602 1.21135 0.94840 1.00695 0.91786 0.89454 0.88784 0.92664 0.90432 0.91974 0.88538 0.95913 0.98282 0.92466 0.86304 0.82572 0.82786 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.64 71.98 0.62 -1.90 16 2 C -0.06 -1.53 2.09 -12.29 -0.03 -1.56 16 3 H 0.12 2.43 7.13 -2.38 -0.02 2.42 16 4 C 0.50 19.00 6.94 87.66 0.61 19.61 16 5 O -0.59 -28.33 14.68 -3.04 -0.04 -28.38 16 6 N -0.61 -24.09 2.86 -851.12 -2.43 -26.53 16 7 C 0.07 1.97 8.80 127.77 1.12 3.09 16 8 C 0.26 13.61 5.16 85.63 0.44 14.05 16 9 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.52 5.46 84.65 0.46 0.98 16 12 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 13 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 C -0.08 -1.84 4.39 -19.90 -0.09 -1.92 16 18 C -0.06 -1.50 7.92 22.33 0.18 -1.32 16 19 C -0.12 -2.29 10.03 22.23 0.22 -2.06 16 20 C -0.06 -1.14 9.76 22.54 0.22 -0.92 16 21 C -0.05 -1.00 5.73 -21.36 -0.12 -1.12 16 22 C 0.28 6.72 15.33 88.33 1.35 8.07 16 23 N -0.47 -13.06 18.54 19.00 0.35 -12.71 16 24 C -0.06 -1.39 9.38 22.54 0.21 -1.17 16 25 H 0.09 1.33 4.53 -2.39 -0.01 1.32 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.04 7.38 -2.38 -0.02 1.02 16 28 H 0.08 1.63 6.95 -2.39 -0.02 1.62 16 29 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 30 H 0.10 1.85 6.01 -2.39 -0.01 1.84 16 31 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 32 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.12 3.02 7.50 -2.91 -0.02 2.99 16 35 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.14 2.60 7.94 -2.91 -0.02 2.58 16 Total: -1.00 -75.50 320.62 6.72 -68.78 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.08 Total: 3.96 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.45 Total: 3.41 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -1.79 Total: -94.50 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.04 Total: -28.38 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -75.50 6.72 -68.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359834702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.838 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds