Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36951 * 125.07081 * 2 1 4 4 C 1.34199 * 109.92069 * 179.97438 * 3 2 1 5 5 C 1.46550 * 107.01495 * 0.02562 * 4 3 2 6 6 C 1.39677 * 133.92081 * 180.02562 * 5 4 3 7 7 C 1.36517 * 119.86147 * 179.97438 * 6 5 4 8 8 C 1.39424 * 120.45817 * 359.97438 * 7 6 5 9 9 N 1.40001 * 119.74435 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99944 * 213.57496 * 9 8 7 11 11 O 1.21289 * 119.99930 * 5.27246 * 10 9 8 12 12 C 1.50702 * 119.99797 * 185.27831 * 10 9 8 13 13 C 1.52992 * 109.47083 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47356 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00272 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00240 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46982 * 90.00224 * 18 16 14 20 20 H 1.48498 * 109.47095 * 210.00025 * 18 16 14 21 21 H 1.48504 * 109.47126 * 330.00299 * 18 16 14 22 22 C 1.38358 * 120.51204 * 359.97438 * 8 7 6 23 23 C 1.37712 * 125.07357 * 179.69782 * 2 1 3 24 24 H 1.09001 * 109.46864 * 90.02447 * 1 2 3 25 25 H 1.08996 * 109.47041 * 330.02649 * 1 2 3 26 26 H 1.08995 * 109.47120 * 210.02093 * 1 2 3 27 27 H 1.07995 * 125.04181 * 359.96272 * 3 2 1 28 28 H 1.08000 * 126.49395 * 180.02562 * 4 3 2 29 29 H 1.08003 * 120.07018 * 359.92882 * 6 5 4 30 30 H 1.07996 * 119.77115 * 179.97438 * 7 6 5 31 31 H 0.97000 * 119.99649 * 33.56815 * 9 8 7 32 32 H 1.09000 * 109.46775 * 299.99592 * 12 10 9 33 33 H 1.09001 * 109.47083 * 59.99384 * 12 10 9 34 34 H 1.09008 * 109.47178 * 299.99831 * 13 12 10 35 35 H 1.09001 * 109.47583 * 59.99790 * 13 12 10 36 36 H 0.97002 * 120.00304 * 179.97438 * 17 16 14 37 37 H 1.07992 * 120.13720 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2519 1.1209 0.0000 4 6 3.5473 0.7701 0.0006 5 6 3.5949 -0.6946 0.0003 6 6 4.6320 -1.6302 0.0011 7 6 4.3437 -2.9646 0.0011 8 6 3.0197 -3.4015 0.0009 9 7 2.7410 -4.7735 0.0014 10 6 1.6541 -5.2406 -0.6442 11 8 0.9708 -4.4872 -1.3048 12 6 1.2878 -6.6991 -0.5451 13 6 0.0227 -6.9639 -1.3637 14 6 -0.3441 -8.4222 -1.2641 15 1 0.2646 -9.0932 -0.6761 16 6 -1.4567 -8.8998 -1.9236 17 7 -2.1982 -8.0828 -2.6392 18 14 -1.9108 -10.7077 -1.8008 19 1 -2.8164 -10.9129 -0.6419 20 1 -2.5981 -11.1312 -3.0471 21 1 -0.6789 -11.5160 -1.6155 22 6 1.9790 -2.4897 0.0012 23 6 2.2563 -1.1270 0.0059 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5141 27 1 1.8845 2.1364 -0.0006 28 1 4.3942 1.4403 0.0011 29 1 5.6599 -1.2987 0.0010 30 1 5.1467 -3.6867 0.0013 31 1 3.3303 -5.3879 0.4664 32 1 2.1057 -7.3063 -0.9330 33 1 1.1061 -6.9580 0.4980 34 1 -0.7951 -6.3567 -0.9753 35 1 0.2039 -6.7049 -2.4068 36 1 -2.9807 -8.4189 -3.1035 37 1 0.9557 -2.8349 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360033484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -2.988545 kcal Electronic energy + Delta-G solvation = -19682.809325 eV Core-core repulsion = 16617.403010 eV Total energy + Delta-G solvation = -3065.406316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27666 -41.05250 -38.18737 -35.61396 -35.32144 -33.50742 -32.84277 -31.29338 -29.34222 -27.52646 -27.13620 -24.53709 -23.36171 -22.29752 -21.24185 -21.08346 -18.92452 -18.43727 -17.89333 -17.35104 -16.73732 -16.51612 -16.46772 -16.20856 -15.40430 -15.07674 -14.92193 -14.39623 -14.30122 -14.08820 -13.81459 -13.79479 -13.31212 -13.24360 -12.83764 -12.72137 -12.59448 -12.47904 -12.11265 -11.93068 -11.66295 -11.31966 -11.08863 -10.77783 -10.57923 -10.27721 -8.91996 -8.40603 -8.19338 -6.33414 0.14730 0.59796 1.41830 1.44480 1.55481 1.57294 1.88425 1.90704 2.19439 2.43509 2.96036 3.13952 3.73776 3.85710 4.01963 4.02630 4.20333 4.34005 4.37159 4.47263 4.51752 4.53090 4.62193 4.65671 4.72578 4.99828 5.04314 5.07416 5.37867 5.41655 5.48564 5.56646 5.60105 5.82905 5.87096 5.91204 6.15443 6.27114 6.44562 6.51835 6.84781 7.22804 7.36969 8.93356 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.003482 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.336132 B = 8039.268087 C = 8759.031039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.498 5.498 3 C 0.047 3.953 4 C -0.212 4.212 5 C -0.145 4.145 6 C -0.053 4.053 7 C -0.165 4.165 8 C 0.150 3.850 9 N -0.660 5.660 10 C 0.509 3.491 11 O -0.567 6.567 12 C -0.116 4.116 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.254 1.254 22 C -0.162 4.162 23 C 0.084 3.916 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.206 0.794 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.430 0.570 32 H 0.111 0.889 33 H 0.110 0.890 34 H -0.018 1.018 35 H -0.017 1.017 36 H 0.263 0.737 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 16.506 9.464 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.182 5.182 3 C -0.077 4.077 4 C -0.236 4.236 5 C -0.151 4.151 6 C -0.071 4.071 7 C -0.186 4.186 8 C 0.055 3.945 9 N -0.308 5.308 10 C 0.300 3.700 11 O -0.445 6.445 12 C -0.156 4.156 13 C 0.004 3.996 14 C -0.581 4.581 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.178 1.178 22 C -0.186 4.186 23 C -0.023 4.023 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.223 0.777 28 H 0.191 0.809 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.269 0.731 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.001 0.999 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.260 17.010 8.900 23.332 hybrid contribution -0.891 -1.128 -0.212 1.453 sum 12.369 15.882 8.687 21.925 Atomic orbital electron populations 1.22083 0.76204 1.05019 1.03391 1.44181 1.06836 1.04314 1.62825 1.22500 0.90320 0.91851 1.03020 1.22016 0.97168 0.91800 1.12647 1.19702 0.91703 0.95343 1.08304 1.20441 0.99152 0.90851 0.96692 1.20699 0.93756 0.97130 1.07030 1.17584 0.93550 0.82976 1.00399 1.43525 1.27634 1.06229 1.53364 1.21645 0.79473 0.91912 0.77019 1.90672 1.52323 1.60338 1.41169 1.21668 1.00650 0.89458 1.03788 1.18694 0.91752 0.95484 0.93640 1.21709 1.10917 0.94838 1.30586 0.90407 1.26145 0.96335 1.03332 0.94672 1.70177 1.17216 1.37547 1.32864 0.85311 0.78881 0.78532 0.77463 1.19721 1.21261 1.17797 1.19829 0.98903 0.90268 1.09583 1.18244 0.91669 0.87988 1.04446 0.91488 0.86381 0.91683 0.77693 0.80888 0.82305 0.82548 0.73095 0.87067 0.87212 0.99944 0.99906 0.92876 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 11.03 127.77 1.41 2.93 16 2 N -0.50 -12.62 3.18 -539.24 -1.72 -14.34 16 3 C 0.05 0.89 11.29 82.97 0.94 1.83 16 4 C -0.21 -4.27 11.08 23.52 0.26 -4.01 16 5 C -0.15 -3.85 6.37 -20.17 -0.13 -3.98 16 6 C -0.05 -1.19 10.04 22.22 0.22 -0.96 16 7 C -0.17 -3.95 9.88 22.15 0.22 -3.73 16 8 C 0.15 4.70 6.27 38.15 0.24 4.94 16 9 N -0.66 -19.67 5.34 -303.41 -1.62 -21.29 16 10 C 0.51 20.36 7.56 87.66 0.66 21.02 16 11 O -0.57 -28.60 13.67 -3.06 -0.04 -28.64 16 12 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 13 C 0.04 2.34 4.26 29.84 0.13 2.47 16 14 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 16 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 17 N -0.94 -59.70 13.29 21.45 0.28 -59.42 16 18 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 22 C -0.16 -5.82 8.55 22.50 0.19 -5.63 16 23 C 0.08 2.63 6.80 39.01 0.27 2.90 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 27 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 28 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 29 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.43 8.79 8.82 -92.71 -0.82 7.98 16 32 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 33 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 34 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 35 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.10 4.12 6.40 -2.91 -0.02 4.10 16 Total: -1.00 -82.78 320.05 4.47 -78.31 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.26 Total: 16.33 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.27 Total: -17.26 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -3.05 Total: -95.04 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.78 4.47 -78.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360033484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.326 kcal (2) G-P(sol) polarization free energy of solvation -82.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds