Wall clock time and date at job start Mon Mar 30 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 17 17 C 1.53000 * 109.47313 * 300.00086 * 15 13 12 18 18 C 1.50703 * 109.47404 * 179.97438 * 15 13 12 19 19 C 1.38379 * 119.92012 * 59.99778 * 18 15 13 20 20 C 1.38342 * 120.30583 * 179.97438 * 19 18 15 21 21 C 1.37975 * 120.14916 * 359.97438 * 20 19 18 22 22 C 1.39610 * 119.84542 * 0.02562 * 21 20 19 23 23 C 1.43196 * 120.15074 * 180.02562 * 22 21 20 24 24 N 9.12123 * 120.58807 * 76.14074 * 2 1 3 25 25 C 1.37917 * 119.92557 * 239.72530 * 18 15 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 31 31 H 1.09008 * 109.46947 * 299.99858 * 17 15 13 32 32 H 1.09001 * 109.47403 * 59.99872 * 17 15 13 33 33 H 1.09001 * 109.47524 * 180.02562 * 17 15 13 34 34 H 1.08004 * 119.85087 * 0.02562 * 19 18 15 35 35 H 1.07994 * 119.92769 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.07740 * 180.02562 * 21 20 19 37 37 H 1.08006 * 120.08006 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7043 -1.8822 3.9315 18 6 2.7001 0.2399 4.7413 19 6 1.5433 0.8695 5.1659 20 6 1.5812 1.7596 6.2242 21 6 2.7744 2.0249 6.8642 22 6 3.9453 1.3932 6.4410 23 6 5.1871 1.6633 7.1008 24 7 6.1714 1.8808 7.6234 25 6 3.8989 0.4923 5.3748 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 2.2490 -1.6317 1.1527 31 1 0.7051 -1.4897 4.1206 32 1 1.6676 -2.5827 3.0971 33 1 2.0670 -2.3959 4.8218 34 1 0.6064 0.6645 4.6693 35 1 0.6747 2.2472 6.5508 36 1 2.8026 2.7197 7.6906 37 1 4.8001 -0.0034 5.0455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360157581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:54 Heat of formation + Delta-G solvation = 3.628843 kcal Electronic energy + Delta-G solvation = -19868.067152 eV Core-core repulsion = 16802.947788 eV Total energy + Delta-G solvation = -3065.119364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13746 -38.62047 -36.56995 -34.89159 -34.04226 -32.36994 -31.35942 -29.92090 -28.51198 -25.29118 -24.78507 -23.81897 -22.37602 -20.92137 -19.45948 -18.34020 -16.97482 -16.43279 -16.03363 -15.36176 -15.30462 -14.67548 -14.32375 -14.16907 -14.04246 -13.53986 -13.22054 -13.14617 -12.87385 -12.59930 -12.43850 -12.22226 -12.06951 -11.69088 -11.63477 -11.30119 -11.11450 -10.97759 -10.95507 -10.72973 -10.32880 -10.27168 -9.18069 -9.07429 -8.92273 -8.78729 -8.57886 -7.94532 -6.15459 -4.24819 0.73692 1.22526 2.54408 2.87292 3.21472 3.29536 3.31583 3.33677 3.69040 3.80463 4.12710 4.36757 4.52189 4.73871 4.93009 5.10605 5.15885 5.17433 5.23518 5.38123 5.41851 5.68707 5.73246 5.79566 5.89664 6.08299 6.16426 6.28447 6.49517 6.73074 6.79139 6.92185 7.11629 7.35876 7.42178 7.52524 7.66274 7.88252 8.12037 8.62702 8.74889 9.08254 9.43115 10.90459 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.003751 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.961361 B = 7462.033465 C = 7702.855817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.505 3.495 14 O -0.547 6.547 15 C -0.079 4.079 16 H 0.102 0.898 17 C -0.139 4.139 18 C -0.058 4.058 19 C -0.049 4.049 20 C -0.123 4.123 21 C -0.073 4.073 22 C -0.040 4.040 23 C 0.262 3.738 24 N -0.429 5.429 25 C -0.064 4.064 26 H 0.026 0.974 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -4.199 15.248 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.425 6.425 15 C -0.101 4.101 16 H 0.120 0.880 17 C -0.197 4.197 18 C -0.058 4.058 19 C -0.068 4.068 20 C -0.141 4.141 21 C -0.094 4.094 22 C -0.043 4.043 23 C -0.053 4.053 24 N -0.105 5.105 25 C -0.084 4.084 26 H 0.045 0.955 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.119 -2.888 15.909 16.208 hybrid contribution 0.067 -0.916 -1.237 1.541 sum 1.186 -3.804 14.672 15.203 Atomic orbital electron populations 1.22070 0.98460 0.99062 1.00874 1.18742 0.91004 0.93982 0.80001 0.93390 1.21257 1.32417 1.13229 0.90346 0.92033 1.24888 0.94796 0.94943 0.99083 1.69905 1.35874 1.22470 1.23800 0.86405 0.78615 0.79544 0.82602 1.19727 1.20878 1.20873 1.46514 1.64935 1.13528 1.10437 1.20180 0.78943 0.87478 0.84513 1.90680 1.51053 1.15839 1.84965 1.20403 1.02165 0.95399 0.92103 0.87988 1.21784 0.99083 0.96533 1.02298 1.19293 0.92958 0.97864 0.95708 1.21250 0.98596 0.93261 0.93690 1.21057 0.97767 0.98771 0.96459 1.21110 0.91148 0.97924 0.99184 1.15878 0.87309 1.02593 0.98543 1.25741 0.92901 0.93398 0.93225 1.81210 1.10936 1.08760 1.09560 1.21010 0.97941 0.95889 0.93598 0.95492 0.89196 0.96687 0.92614 0.77914 0.91828 0.91322 0.91616 0.85252 0.84994 0.85317 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16 2 C 0.26 6.44 2.56 -69.09 -0.18 6.27 16 3 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.40 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.71 -13.58 4.96 -54.94 -0.27 -13.85 16 13 C 0.51 9.04 6.99 -10.99 -0.08 8.97 16 14 O -0.55 -11.96 14.76 5.56 0.08 -11.88 16 15 C -0.08 -0.98 2.90 -92.92 -0.27 -1.25 16 16 H 0.10 1.08 7.87 -51.92 -0.41 0.67 16 17 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 18 C -0.06 -0.70 4.39 -104.69 -0.46 -1.16 16 19 C -0.05 -0.58 7.92 -39.49 -0.31 -0.90 16 20 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 21 C -0.07 -0.70 9.76 -39.17 -0.38 -1.08 16 22 C -0.04 -0.43 5.73 -106.93 -0.61 -1.05 16 23 C 0.26 3.18 15.33 -22.49 -0.34 2.84 16 24 N -0.43 -6.05 18.53 41.82 0.77 -5.28 16 25 C -0.06 -0.71 9.38 -39.17 -0.37 -1.08 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 6.38 7.96 -40.82 -0.32 6.05 16 31 H 0.06 0.65 7.38 -51.92 -0.38 0.27 16 32 H 0.07 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.13 1.58 7.50 -52.48 -0.39 1.18 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.24 7.94 -52.48 -0.42 0.82 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.84 324.06 -6.73 -37.57 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.68 Total: 3.74 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.12 Total: -6.61 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 1.13 Total: -42.91 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.84 -6.73 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.198 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds