Wall clock time and date at job start Mon Mar 30 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 17 17 C 1.53000 * 109.47313 * 300.00086 * 15 13 12 18 18 C 1.50703 * 109.47404 * 179.97438 * 15 13 12 19 19 C 1.38379 * 119.92012 * 59.99778 * 18 15 13 20 20 C 1.38342 * 120.30583 * 179.97438 * 19 18 15 21 21 C 1.37975 * 120.14916 * 359.97438 * 20 19 18 22 22 C 1.39610 * 119.84542 * 0.02562 * 21 20 19 23 23 C 1.43196 * 120.15074 * 180.02562 * 22 21 20 24 24 N 9.12123 * 120.58807 * 76.14074 * 2 1 3 25 25 C 1.37917 * 119.92557 * 239.72530 * 18 15 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 31 31 H 1.09008 * 109.46947 * 299.99858 * 17 15 13 32 32 H 1.09001 * 109.47403 * 59.99872 * 17 15 13 33 33 H 1.09001 * 109.47524 * 180.02562 * 17 15 13 34 34 H 1.08004 * 119.85087 * 0.02562 * 19 18 15 35 35 H 1.07994 * 119.92769 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.07740 * 180.02562 * 21 20 19 37 37 H 1.08006 * 120.08006 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7043 -1.8822 3.9315 18 6 2.7001 0.2399 4.7413 19 6 1.5433 0.8695 5.1659 20 6 1.5812 1.7596 6.2242 21 6 2.7744 2.0249 6.8642 22 6 3.9453 1.3932 6.4410 23 6 5.1871 1.6633 7.1008 24 7 6.1714 1.8808 7.6234 25 6 3.8989 0.4923 5.3748 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 2.2490 -1.6317 1.1527 31 1 0.7051 -1.4897 4.1206 32 1 1.6676 -2.5827 3.0971 33 1 2.0670 -2.3959 4.8218 34 1 0.6064 0.6645 4.6693 35 1 0.6747 2.2472 6.5508 36 1 2.8026 2.7197 7.6906 37 1 4.8001 -0.0034 5.0455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360157581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:54 Heat of formation + Delta-G solvation = -14.568114 kcal Electronic energy + Delta-G solvation = -19868.856231 eV Core-core repulsion = 16802.947788 eV Total energy + Delta-G solvation = -3065.908443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23790 -39.85487 -37.60302 -36.64153 -35.13482 -34.17524 -32.20947 -31.19812 -29.93462 -27.30373 -25.74963 -24.77237 -23.57277 -22.31860 -20.99051 -19.54842 -18.39767 -17.58422 -17.18148 -17.08620 -16.44762 -16.08277 -15.62235 -15.30774 -15.09296 -14.71402 -14.47044 -14.26419 -14.12633 -13.90692 -13.70251 -13.51869 -13.03697 -12.98612 -12.92518 -12.79695 -12.68889 -12.51305 -12.24594 -12.14249 -12.08805 -11.79523 -11.04689 -10.64016 -10.47560 -9.84703 -9.70336 -9.65721 -8.15384 -6.32307 -0.13563 0.40005 1.45343 1.47042 1.58313 1.59336 1.91883 1.94812 2.38268 2.65211 2.88124 3.01717 3.15476 3.60647 3.91707 4.06286 4.21274 4.28213 4.36671 4.38542 4.59743 4.78451 4.84985 4.94544 4.97468 5.00772 5.07124 5.15497 5.30274 5.35603 5.45417 5.49367 5.63485 5.66355 5.75498 5.90818 5.96443 6.15153 6.42390 6.77106 7.05475 7.36130 7.64762 8.90768 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.003751 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.961361 B = 7462.033465 C = 7702.855817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.286 1.286 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.591 6.591 15 C -0.065 4.065 16 H 0.126 0.874 17 C -0.136 4.136 18 C -0.076 4.076 19 C -0.063 4.063 20 C -0.122 4.122 21 C -0.064 4.064 22 C -0.048 4.048 23 C 0.284 3.716 24 N -0.467 5.467 25 C -0.063 4.063 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 -5.842 16.196 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.472 6.472 15 C -0.087 4.087 16 H 0.144 0.856 17 C -0.193 4.193 18 C -0.076 4.076 19 C -0.082 4.082 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.051 4.051 23 C -0.030 4.030 24 N -0.143 5.143 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.623 -4.573 16.887 17.570 hybrid contribution -0.127 -0.338 -1.480 1.524 sum 1.496 -4.912 15.406 16.239 Atomic orbital electron populations 1.21876 0.98280 0.99431 0.99510 1.18289 0.91098 0.91795 0.82040 0.98575 1.21613 1.32322 1.13469 0.90891 0.90822 1.25778 0.94951 0.95587 1.02301 1.70057 1.37130 1.24014 1.24433 0.85338 0.78068 0.78569 0.78599 1.18255 1.20540 1.21218 1.46252 1.65248 1.14208 1.09627 1.21169 0.77519 0.87081 0.85422 1.90655 1.52667 1.18082 1.85759 1.20361 1.03586 0.95644 0.89072 0.85625 1.21809 0.98179 0.95607 1.03728 1.19330 0.93484 0.98689 0.96115 1.21366 0.98309 0.94068 0.94451 1.21317 0.98909 0.98085 0.95647 1.21405 0.90375 0.97365 0.99258 1.15956 0.87196 1.03198 0.98799 1.25823 0.92597 0.92289 0.92307 1.81235 1.12007 1.10145 1.10913 1.21143 0.98079 0.95752 0.93404 0.94051 0.91866 0.96680 0.92665 0.76022 0.92514 0.90738 0.88891 0.86260 0.82630 0.82840 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 9.26 71.98 0.67 -5.76 16 2 C 0.27 13.51 2.56 44.24 0.11 13.62 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.54 -27.95 8.73 25.60 0.22 -27.73 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 8 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 9 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.70 -26.84 4.96 -446.11 -2.21 -29.06 16 13 C 0.50 17.82 6.99 87.66 0.61 18.43 16 14 O -0.59 -26.41 14.76 -3.03 -0.04 -26.46 16 15 C -0.07 -1.50 2.90 -12.29 -0.04 -1.54 16 16 H 0.13 2.30 7.87 -2.38 -0.02 2.28 16 17 C -0.14 -2.35 8.90 71.98 0.64 -1.70 16 18 C -0.08 -1.72 4.39 -19.91 -0.09 -1.81 16 19 C -0.06 -1.43 7.92 22.33 0.18 -1.25 16 20 C -0.12 -2.16 10.03 22.23 0.22 -1.94 16 21 C -0.06 -1.07 9.76 22.54 0.22 -0.85 16 22 C -0.05 -0.95 5.73 -21.36 -0.12 -1.07 16 23 C 0.28 6.44 15.33 88.34 1.35 7.80 16 24 N -0.47 -12.69 18.53 19.00 0.35 -12.34 16 25 C -0.06 -1.28 9.38 22.54 0.21 -1.07 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 28 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.40 12.69 7.96 -92.70 -0.74 11.95 16 31 H 0.06 1.07 7.38 -2.38 -0.02 1.05 16 32 H 0.07 1.20 7.57 -2.39 -0.02 1.19 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 2.89 7.50 -2.91 -0.02 2.87 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.15 2.41 7.94 -2.91 -0.02 2.39 16 Total: -1.00 -68.40 324.06 5.36 -63.04 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.35 Total: 16.94 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 4.65 Total: -3.69 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -1.62 Total: -93.04 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.04 Total: -26.46 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -68.40 5.36 -63.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds