Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.47367 * 299.99739 * 15 13 12 17 17 C 1.52997 * 109.47292 * 60.00419 * 15 13 12 18 18 C 1.50700 * 109.46876 * 180.02562 * 15 13 12 19 19 C 1.38390 * 119.92275 * 299.72457 * 18 15 13 20 20 C 1.38339 * 120.30208 * 179.76686 * 19 18 15 21 21 C 1.37970 * 120.15496 * 0.50792 * 20 19 18 22 22 C 1.39614 * 119.84399 * 359.74427 * 21 20 19 23 23 C 1.43195 * 120.14935 * 179.97438 * 22 21 20 24 24 N 9.12057 * 84.28800 * 87.13243 * 2 1 3 25 25 C 1.37919 * 119.92816 * 119.99742 * 18 15 13 26 26 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 27 27 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 28 28 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 29 29 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 31 31 H 1.08994 * 109.47272 * 179.97438 * 17 15 13 32 32 H 1.09001 * 109.46997 * 299.99490 * 17 15 13 33 33 H 1.09001 * 109.47035 * 59.99696 * 17 15 13 34 34 H 1.08002 * 119.84491 * 0.02562 * 19 18 15 35 35 H 1.08001 * 119.92066 * 180.25967 * 20 19 18 36 36 H 1.07998 * 120.07732 * 179.72892 * 21 20 19 37 37 H 1.08005 * 120.07579 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 1 1.9777 -1.5512 3.8324 17 6 4.0526 -1.2789 3.3212 18 6 2.7000 0.2391 4.7412 19 6 3.4976 1.3673 4.6617 20 6 3.5458 2.2636 5.7143 21 6 2.8059 2.0326 6.8557 22 6 2.0032 0.8938 6.9448 23 6 1.2331 0.6474 8.1266 24 7 0.6223 0.4540 9.0639 25 6 1.9553 -0.0041 5.8762 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3633 0.4348 0.9311 28 1 -0.3634 -1.0238 -0.0891 29 1 2.9363 -0.1045 -4.2556 30 1 2.2490 -1.6319 1.1524 31 1 4.4165 -1.7924 4.2111 32 1 4.0160 -1.9792 2.4867 33 1 4.7248 -0.4566 3.0762 34 1 4.0819 1.5508 3.7721 35 1 4.1671 3.1442 5.6440 36 1 2.8479 2.7310 7.6785 37 1 1.3369 -0.8874 5.9389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360157582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = 3.279467 kcal Electronic energy + Delta-G solvation = -19968.311052 eV Core-core repulsion = 16903.176538 eV Total energy + Delta-G solvation = -3065.134514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21003 -38.73473 -36.62574 -34.99432 -34.11042 -32.37592 -31.40793 -30.29969 -28.98234 -25.37920 -24.82623 -23.86443 -22.41515 -20.80537 -19.61912 -18.42439 -17.22957 -16.49628 -16.17182 -15.66983 -15.40914 -14.73507 -14.26017 -14.18947 -14.02538 -13.52616 -13.34344 -13.21784 -12.92746 -12.75290 -12.55059 -12.37795 -12.21973 -11.98957 -11.75969 -11.54716 -11.20694 -11.14815 -11.00460 -10.83521 -10.60310 -9.91926 -9.27345 -9.24085 -8.99883 -8.86680 -8.73042 -8.13201 -6.27594 -4.31507 0.68863 1.17599 2.49904 2.82599 3.18813 3.24116 3.30819 3.37634 3.63716 3.74857 4.05268 4.28464 4.47487 4.68498 4.87672 5.03122 5.11060 5.14305 5.19975 5.34474 5.36221 5.64410 5.71997 5.76783 5.86235 6.07283 6.13317 6.25149 6.30364 6.44971 6.48956 6.64728 6.68728 6.90178 7.15230 7.31326 7.33191 7.51362 8.08853 8.52369 8.72817 8.92230 9.34413 10.84107 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.004119 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.789497 B = 6796.863922 C = 6912.891601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.701 5.701 13 C 0.504 3.496 14 O -0.551 6.551 15 C -0.078 4.078 16 H 0.103 0.897 17 C -0.141 4.141 18 C -0.058 4.058 19 C -0.050 4.050 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.040 4.040 23 C 0.262 3.738 24 N -0.429 5.429 25 C -0.064 4.064 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.268 0.732 30 H 0.393 0.607 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 1.037 15.935 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.349 5.349 13 C 0.289 3.711 14 O -0.430 6.430 15 C -0.099 4.099 16 H 0.121 0.879 17 C -0.199 4.199 18 C -0.059 4.059 19 C -0.069 4.069 20 C -0.140 4.140 21 C -0.094 4.094 22 C -0.043 4.043 23 C -0.053 4.053 24 N -0.104 5.104 25 C -0.084 4.084 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.426 1.595 17.180 17.424 hybrid contribution 0.262 0.564 -0.618 0.877 sum 2.689 2.159 16.562 16.917 Atomic orbital electron populations 1.22222 0.98654 1.00556 0.99249 1.19121 0.90869 0.94319 0.82779 0.93207 1.21011 1.45279 0.95620 0.94977 0.90334 1.24943 0.93614 0.98616 0.95157 1.69877 1.44675 1.36226 1.01698 0.86897 0.79761 0.85859 0.77401 1.19849 1.21202 1.18493 1.46629 1.64699 1.13897 1.09712 1.20312 0.78657 0.87570 0.84587 1.90669 1.51316 1.15994 1.85050 1.20394 0.99872 0.97469 0.92191 0.87912 1.21801 0.93881 1.01668 1.02526 1.19300 0.96690 0.96084 0.93814 1.21271 0.95791 0.92137 0.97685 1.21060 1.00041 0.99872 0.93036 1.21115 0.94684 0.95154 0.98398 1.15877 1.00288 0.98424 0.89722 1.25737 0.93187 0.93474 0.92905 1.81211 1.09866 1.08163 1.11168 1.21000 0.97594 0.98303 0.91546 0.92964 0.95228 0.93438 0.92209 0.77321 0.91571 0.91023 0.91738 0.85211 0.84985 0.85305 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.47 37.16 0.35 -2.79 16 2 C 0.23 5.23 2.22 -69.08 -0.15 5.08 16 3 H 0.05 1.23 4.73 -51.93 -0.25 0.99 16 4 C -0.53 -13.69 9.05 -34.44 -0.31 -14.00 16 5 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 8 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.26 -6.17 6.82 56.52 0.39 -5.78 16 12 N -0.70 -12.88 4.96 -54.93 -0.27 -13.16 16 13 C 0.50 8.60 6.99 -10.98 -0.08 8.52 16 14 O -0.55 -11.38 14.79 5.56 0.08 -11.30 16 15 C -0.08 -0.92 2.90 -92.92 -0.27 -1.19 16 16 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 17 C -0.14 -1.42 8.90 37.16 0.33 -1.09 16 18 C -0.06 -0.68 4.39 -104.68 -0.46 -1.14 16 19 C -0.05 -0.58 7.93 -39.49 -0.31 -0.89 16 20 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 21 C -0.07 -0.67 9.76 -39.17 -0.38 -1.06 16 22 C -0.04 -0.41 5.73 -106.93 -0.61 -1.03 16 23 C 0.26 3.05 15.33 -22.50 -0.34 2.71 16 24 N -0.43 -5.85 18.53 41.81 0.77 -5.08 16 25 C -0.06 -0.67 9.38 -39.17 -0.37 -1.04 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.39 6.28 8.01 -40.82 -0.33 5.96 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.71 7.57 -51.93 -0.39 0.32 16 33 H 0.06 0.69 7.37 -51.93 -0.38 0.30 16 34 H 0.13 1.57 7.50 -52.49 -0.39 1.17 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 1.15 7.94 -52.48 -0.42 0.73 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -31.30 323.82 -6.13 -37.43 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.68 Total: 2.98 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.10 Total: -7.38 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 1.28 Total: -42.95 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.30 -6.13 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.713 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds