Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.47367 * 299.99739 * 15 13 12 17 17 C 1.52997 * 109.47292 * 60.00419 * 15 13 12 18 18 C 1.50700 * 109.46876 * 180.02562 * 15 13 12 19 19 C 1.38390 * 119.92275 * 299.72457 * 18 15 13 20 20 C 1.38339 * 120.30208 * 179.76686 * 19 18 15 21 21 C 1.37970 * 120.15496 * 0.50792 * 20 19 18 22 22 C 1.39614 * 119.84399 * 359.74427 * 21 20 19 23 23 C 1.43195 * 120.14935 * 179.97438 * 22 21 20 24 24 N 9.12057 * 84.28800 * 87.13243 * 2 1 3 25 25 C 1.37919 * 119.92816 * 119.99742 * 18 15 13 26 26 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 27 27 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 28 28 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 29 29 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 31 31 H 1.08994 * 109.47272 * 179.97438 * 17 15 13 32 32 H 1.09001 * 109.46997 * 299.99490 * 17 15 13 33 33 H 1.09001 * 109.47035 * 59.99696 * 17 15 13 34 34 H 1.08002 * 119.84491 * 0.02562 * 19 18 15 35 35 H 1.08001 * 119.92066 * 180.25967 * 20 19 18 36 36 H 1.07998 * 120.07732 * 179.72892 * 21 20 19 37 37 H 1.08005 * 120.07579 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 1 1.9777 -1.5512 3.8324 17 6 4.0526 -1.2789 3.3212 18 6 2.7000 0.2391 4.7412 19 6 3.4976 1.3673 4.6617 20 6 3.5458 2.2636 5.7143 21 6 2.8059 2.0326 6.8557 22 6 2.0032 0.8938 6.9448 23 6 1.2331 0.6474 8.1266 24 7 0.6223 0.4540 9.0639 25 6 1.9553 -0.0041 5.8762 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3633 0.4348 0.9311 28 1 -0.3634 -1.0238 -0.0891 29 1 2.9363 -0.1045 -4.2556 30 1 2.2490 -1.6319 1.1524 31 1 4.4165 -1.7924 4.2111 32 1 4.0160 -1.9792 2.4867 33 1 4.7248 -0.4566 3.0762 34 1 4.0819 1.5508 3.7721 35 1 4.1671 3.1442 5.6440 36 1 2.8479 2.7310 7.6785 37 1 1.3369 -0.8874 5.9389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360157582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = -15.755282 kcal Electronic energy + Delta-G solvation = -19969.136461 eV Core-core repulsion = 16903.176538 eV Total energy + Delta-G solvation = -3065.959923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26782 -39.89308 -37.61127 -36.64540 -35.14635 -34.28354 -32.21593 -31.69073 -30.10590 -27.30892 -25.78175 -24.76865 -23.49801 -22.15230 -21.11640 -19.67092 -18.71387 -17.63867 -17.28257 -17.14180 -16.51460 -15.97671 -15.68346 -15.21776 -15.07666 -14.83743 -14.51351 -14.40103 -14.27067 -14.12094 -13.87647 -13.58099 -13.19636 -13.04431 -13.03295 -12.88237 -12.76386 -12.53725 -12.39989 -12.13766 -11.86530 -11.80031 -11.19633 -10.82507 -10.55779 -9.85998 -9.72205 -9.70446 -8.36465 -6.42258 -0.13885 0.39705 1.31228 1.36083 1.46069 1.59726 1.87004 1.94305 2.29101 2.52728 2.86271 2.95985 3.10128 3.60074 3.91009 4.04804 4.19584 4.27513 4.35310 4.37091 4.51194 4.59228 4.75542 4.82065 4.87884 4.94110 4.99744 5.06127 5.14774 5.30263 5.35983 5.41036 5.45328 5.48735 5.63288 5.81411 5.90339 6.16160 6.42783 6.63689 6.98892 7.24355 7.54995 8.78504 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.004119 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.789497 B = 6796.863922 C = 6912.891601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.235 3.765 3 H 0.031 0.969 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.931 5.931 8 Si 0.926 3.074 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.258 1.258 12 N -0.703 5.703 13 C 0.503 3.497 14 O -0.587 6.587 15 C -0.065 4.065 16 H 0.130 0.870 17 C -0.139 4.139 18 C -0.075 4.075 19 C -0.065 4.065 20 C -0.122 4.122 21 C -0.064 4.064 22 C -0.047 4.047 23 C 0.284 3.716 24 N -0.467 5.467 25 C -0.061 4.061 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.270 0.730 30 H 0.405 0.595 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 1.402 17.790 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.131 3.869 3 H 0.048 0.952 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.751 3.249 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.182 1.182 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.468 6.468 15 C -0.086 4.086 16 H 0.148 0.852 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.051 4.051 23 C -0.030 4.030 24 N -0.143 5.143 25 C -0.081 4.081 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.589 1.939 19.062 19.334 hybrid contribution 0.236 0.430 -1.140 1.241 sum 2.825 2.370 17.921 18.297 Atomic orbital electron populations 1.22119 0.97477 1.01135 0.99334 1.18826 0.91680 0.93157 0.83217 0.95154 1.21214 1.44057 0.94827 0.96139 0.92443 1.25601 0.93871 1.02270 0.95029 1.69977 1.46830 1.37703 1.02471 0.86069 0.79732 0.81594 0.77504 1.19690 1.20648 1.18183 1.46356 1.65164 1.14467 1.09208 1.21158 0.77328 0.87202 0.85307 1.90647 1.52645 1.17813 1.85728 1.20355 1.01155 0.97700 0.89412 0.85185 1.21819 0.92570 1.01417 1.03817 1.19311 0.97657 0.96416 0.94139 1.21371 0.96073 0.92897 0.98008 1.21299 1.00103 1.00131 0.92424 1.21396 0.93341 0.94849 0.98801 1.15949 1.00717 0.99114 0.89281 1.25819 0.92341 0.92345 0.92513 1.81240 1.11216 1.09463 1.12393 1.21137 0.97146 0.98827 0.91018 0.93743 0.94400 0.92451 0.92106 0.75908 0.88892 0.91023 0.92739 0.86403 0.82788 0.82926 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 9.47 71.98 0.68 -5.19 16 2 C 0.24 10.51 2.22 44.25 0.10 10.61 16 3 H 0.03 1.49 4.73 -2.39 -0.01 1.48 16 4 C -0.52 -27.18 9.05 25.60 0.23 -26.94 16 5 H 0.06 3.17 8.06 -2.91 -0.02 3.14 16 6 C 0.03 1.78 5.47 84.66 0.46 2.24 16 7 N -0.93 -54.23 13.96 21.45 0.30 -53.93 16 8 Si 0.93 43.32 26.99 68.60 1.85 45.17 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.82 6.82 99.48 0.68 -11.14 16 12 N -0.70 -25.09 4.96 -446.09 -2.21 -27.30 16 13 C 0.50 16.46 6.99 87.66 0.61 17.07 16 14 O -0.59 -23.72 14.79 -3.03 -0.04 -23.77 16 15 C -0.07 -1.39 2.90 -12.29 -0.04 -1.43 16 16 H 0.13 2.09 7.87 -2.39 -0.02 2.07 16 17 C -0.14 -2.48 8.90 71.98 0.64 -1.84 16 18 C -0.07 -1.58 4.39 -19.90 -0.09 -1.66 16 19 C -0.06 -1.39 7.93 22.33 0.18 -1.21 16 20 C -0.12 -2.03 10.03 22.23 0.22 -1.81 16 21 C -0.06 -0.99 9.76 22.54 0.22 -0.77 16 22 C -0.05 -0.86 5.73 -21.36 -0.12 -0.98 16 23 C 0.28 6.04 15.33 88.34 1.35 7.39 16 24 N -0.47 -12.09 18.53 19.00 0.35 -11.74 16 25 C -0.06 -1.12 9.38 22.54 0.21 -0.91 16 26 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.41 12.47 8.01 -92.71 -0.74 11.73 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.28 7.57 -2.39 -0.02 1.26 16 33 H 0.05 1.08 7.37 -2.39 -0.02 1.07 16 34 H 0.12 2.77 7.50 -2.91 -0.02 2.75 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.15 2.13 7.94 -2.91 -0.02 2.10 16 Total: -1.00 -67.54 323.82 5.23 -62.31 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.32 Total: 14.67 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.67 Total: -5.41 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -1.56 Total: -92.97 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.77 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.85 Total: 45.17 kcal Total: -67.54 5.23 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.551 kcal (2) G-P(sol) polarization free energy of solvation -67.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds