Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46939 * 2 1 4 4 C 1.50702 * 109.47502 * 120.00098 * 2 1 3 5 5 O 1.21281 * 119.99853 * 119.99751 * 4 2 1 6 6 N 1.34776 * 120.00244 * 300.00285 * 4 2 1 7 7 C 1.46494 * 119.99967 * 179.97438 * 6 4 2 8 8 H 1.08995 * 109.47241 * 324.99341 * 7 6 4 9 9 C 1.52999 * 109.47264 * 85.00094 * 7 6 4 10 10 C 1.50705 * 109.46877 * 204.99484 * 7 6 4 11 11 H 1.07996 * 119.99986 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99835 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00006 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99940 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.46958 * 90.00170 * 14 12 10 16 16 H 1.48493 * 109.47405 * 210.00287 * 14 12 10 17 17 H 1.48508 * 109.47061 * 330.00360 * 14 12 10 18 18 C 1.50703 * 109.47064 * 240.00320 * 2 1 3 19 19 C 1.38382 * 119.91983 * 300.02309 * 18 2 1 20 20 C 1.38347 * 120.30536 * 179.97438 * 19 18 2 21 21 C 1.37971 * 120.14496 * 359.97438 * 20 19 18 22 22 C 1.39610 * 119.84901 * 359.76286 * 21 20 19 23 23 C 1.43200 * 120.15093 * 180.25306 * 22 21 20 24 24 N 5.95827 * 122.73993 * 276.25626 * 2 1 3 25 25 C 1.37925 * 119.92601 * 119.99727 * 18 2 1 26 26 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46678 * 299.99621 * 1 2 3 28 28 H 1.08997 * 109.47264 * 59.99656 * 1 2 3 29 29 H 0.97000 * 119.99319 * 359.97438 * 6 4 2 30 30 H 1.09009 * 109.46929 * 299.99636 * 9 7 6 31 31 H 1.08995 * 109.47607 * 59.99471 * 9 7 6 32 32 H 1.08997 * 109.47055 * 179.97438 * 9 7 6 33 33 H 0.97004 * 119.99585 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.85139 * 359.97438 * 19 18 2 35 35 H 1.07993 * 119.92925 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.07199 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.07400 * 0.02562 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7069 -0.2501 2.4546 7 6 2.1949 -0.9410 3.6506 8 1 2.2311 -2.0138 3.4611 9 6 3.5976 -0.4361 3.9947 10 6 1.2650 -0.6658 4.8042 11 1 0.3972 -0.0392 4.6606 12 6 1.5217 -1.2148 6.0427 13 7 2.5782 -1.9781 6.2173 14 14 0.3687 -0.8742 7.4724 15 1 -0.6942 -1.9106 7.5089 16 1 1.1345 -0.9056 8.7443 17 1 -0.2509 0.4645 7.3007 18 6 2.0323 -0.7104 -1.2305 19 6 1.6966 -2.0351 -1.4482 20 6 2.1529 -2.6948 -2.5754 21 6 2.9463 -2.0346 -3.4910 22 6 3.2843 -0.6965 -3.2804 23 6 4.1028 -0.0035 -4.2292 24 7 4.7524 0.5462 -4.9819 25 6 2.8251 -0.0385 -2.1374 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.1495 0.5388 2.5436 30 1 4.2702 -0.6352 3.1603 31 1 3.5613 0.6366 4.1842 32 1 3.9604 -0.9499 4.8849 33 1 2.7589 -2.3640 7.0888 34 1 1.0755 -2.5564 -0.7349 35 1 1.8875 -3.7287 -2.7390 36 1 3.3015 -2.5506 -4.3707 37 1 3.0864 0.9953 -1.9663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360157584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = 3.546812 kcal Electronic energy + Delta-G solvation = -19863.060843 eV Core-core repulsion = 16797.937922 eV Total energy + Delta-G solvation = -3065.122921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13563 -38.61927 -36.56433 -34.89205 -34.03749 -32.37176 -31.35855 -29.92618 -28.48450 -25.30368 -24.77880 -23.81495 -22.38215 -20.88501 -19.48273 -18.33966 -16.99524 -16.41594 -15.97709 -15.38539 -15.32983 -14.70291 -14.39536 -14.13246 -13.95668 -13.42317 -13.29859 -13.17221 -12.88394 -12.68230 -12.40371 -12.19350 -11.92202 -11.81291 -11.63638 -11.25015 -11.12990 -11.00322 -10.91746 -10.74144 -10.32938 -10.26411 -9.18219 -9.08522 -8.92257 -8.78596 -8.57575 -7.94446 -6.15401 -4.24949 0.73590 1.22584 2.53513 2.86867 3.21968 3.28774 3.30134 3.33682 3.69263 3.79547 4.12963 4.36197 4.52536 4.73768 4.93349 5.11370 5.16135 5.17447 5.24486 5.38691 5.41876 5.69409 5.74641 5.80212 5.90481 6.09963 6.16884 6.29308 6.49908 6.73341 6.80087 6.94033 7.12481 7.35324 7.42347 7.52637 7.66244 7.88200 8.12204 8.62637 8.74578 9.08163 9.42914 10.90471 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.003657 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.323439 B = 7653.752849 C = 7766.023185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.101 0.899 4 C 0.505 3.495 5 O -0.547 6.547 6 N -0.707 5.707 7 C 0.265 3.735 8 H 0.049 0.951 9 C -0.147 4.147 10 C -0.534 4.534 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.058 4.058 19 C -0.049 4.049 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.040 4.040 23 C 0.262 3.738 24 N -0.430 5.430 25 C -0.064 4.064 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.388 0.612 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 2.385 -14.272 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.119 0.881 4 C 0.289 3.711 5 O -0.425 6.425 6 N -0.354 5.354 7 C 0.164 3.836 8 H 0.066 0.934 9 C -0.206 4.206 10 C -0.573 4.573 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.520 5.520 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.058 4.058 19 C -0.068 4.068 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.044 4.044 23 C -0.053 4.053 24 N -0.105 5.105 25 C -0.084 4.084 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.221 0.779 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.088 2.415 -15.327 15.820 hybrid contribution -0.969 0.360 1.274 1.640 sum -4.057 2.774 -14.053 14.888 Atomic orbital electron populations 1.21786 0.92025 1.03171 1.02756 1.20405 0.97782 1.00306 0.91537 0.88060 1.20188 0.81208 0.85085 0.84652 1.90681 1.38547 1.26644 1.86670 1.46514 1.51479 1.31091 1.06331 1.18733 0.91498 0.93315 0.80099 0.93360 1.22081 0.97958 0.99287 1.01294 1.21214 1.09784 1.32073 0.94211 0.92080 1.24887 0.95411 0.94702 0.98693 1.69900 1.26193 1.31972 1.23972 0.86459 0.80546 0.78670 0.81483 1.20557 1.21085 1.19839 1.19299 0.97413 0.94457 0.94680 1.21266 0.96571 0.93436 0.95481 1.21063 0.98389 1.00313 0.94281 1.21110 0.96673 0.92188 0.99378 1.15874 1.01075 0.93745 0.93682 1.25768 0.93114 0.93301 0.93075 1.81233 1.10227 1.08753 1.10295 1.21000 0.95547 0.99892 0.92008 0.91748 0.91264 0.91653 0.77913 0.96652 0.95508 0.89179 0.92557 0.85184 0.84975 0.85318 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 2 C -0.08 -0.97 2.90 -92.92 -0.27 -1.24 16 3 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16 4 C 0.50 9.03 6.99 -10.98 -0.08 8.96 16 5 O -0.55 -11.95 14.77 5.56 0.08 -11.87 16 6 N -0.71 -13.57 4.96 -54.94 -0.27 -13.85 16 7 C 0.27 6.46 2.56 -69.08 -0.18 6.29 16 8 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 9 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 10 C -0.53 -13.65 8.73 -34.44 -0.30 -13.95 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 13 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 14 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C -0.06 -0.70 4.39 -104.68 -0.46 -1.16 16 19 C -0.05 -0.58 7.92 -39.49 -0.31 -0.90 16 20 C -0.12 -1.22 10.03 -39.64 -0.40 -1.61 16 21 C -0.07 -0.70 9.76 -39.17 -0.38 -1.08 16 22 C -0.04 -0.44 5.73 -106.93 -0.61 -1.05 16 23 C 0.26 3.16 15.33 -22.47 -0.34 2.81 16 24 N -0.43 -6.01 18.54 41.84 0.78 -5.24 16 25 C -0.06 -0.70 9.38 -39.17 -0.37 -1.07 16 26 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 27 H 0.07 0.68 7.57 -51.93 -0.39 0.29 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.39 6.37 7.96 -40.82 -0.32 6.05 16 30 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.13 1.61 7.50 -52.49 -0.39 1.22 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.22 7.94 -52.49 -0.42 0.80 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -30.71 324.07 -6.73 -37.43 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.68 Total: 3.99 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.12 Total: -6.69 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.13 Total: -42.83 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.71 -6.73 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.981 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds