Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46939 * 2 1 4 4 C 1.50702 * 109.47502 * 120.00098 * 2 1 3 5 5 O 1.21281 * 119.99853 * 119.99751 * 4 2 1 6 6 N 1.34776 * 120.00244 * 300.00285 * 4 2 1 7 7 C 1.46494 * 119.99967 * 179.97438 * 6 4 2 8 8 H 1.08995 * 109.47241 * 324.99341 * 7 6 4 9 9 C 1.52999 * 109.47264 * 85.00094 * 7 6 4 10 10 C 1.50705 * 109.46877 * 204.99484 * 7 6 4 11 11 H 1.07996 * 119.99986 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99835 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00006 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99940 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.46958 * 90.00170 * 14 12 10 16 16 H 1.48493 * 109.47405 * 210.00287 * 14 12 10 17 17 H 1.48508 * 109.47061 * 330.00360 * 14 12 10 18 18 C 1.50703 * 109.47064 * 240.00320 * 2 1 3 19 19 C 1.38382 * 119.91983 * 300.02309 * 18 2 1 20 20 C 1.38347 * 120.30536 * 179.97438 * 19 18 2 21 21 C 1.37971 * 120.14496 * 359.97438 * 20 19 18 22 22 C 1.39610 * 119.84901 * 359.76286 * 21 20 19 23 23 C 1.43200 * 120.15093 * 180.25306 * 22 21 20 24 24 N 5.95827 * 122.73993 * 276.25626 * 2 1 3 25 25 C 1.37925 * 119.92601 * 119.99727 * 18 2 1 26 26 H 1.08996 * 109.46981 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46678 * 299.99621 * 1 2 3 28 28 H 1.08997 * 109.47264 * 59.99656 * 1 2 3 29 29 H 0.97000 * 119.99319 * 359.97438 * 6 4 2 30 30 H 1.09009 * 109.46929 * 299.99636 * 9 7 6 31 31 H 1.08995 * 109.47607 * 59.99471 * 9 7 6 32 32 H 1.08997 * 109.47055 * 179.97438 * 9 7 6 33 33 H 0.97004 * 119.99585 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.85139 * 359.97438 * 19 18 2 35 35 H 1.07993 * 119.92925 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.07199 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.07400 * 0.02562 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7069 -0.2501 2.4546 7 6 2.1949 -0.9410 3.6506 8 1 2.2311 -2.0138 3.4611 9 6 3.5976 -0.4361 3.9947 10 6 1.2650 -0.6658 4.8042 11 1 0.3972 -0.0392 4.6606 12 6 1.5217 -1.2148 6.0427 13 7 2.5782 -1.9781 6.2173 14 14 0.3687 -0.8742 7.4724 15 1 -0.6942 -1.9106 7.5089 16 1 1.1345 -0.9056 8.7443 17 1 -0.2509 0.4645 7.3007 18 6 2.0323 -0.7104 -1.2305 19 6 1.6966 -2.0351 -1.4482 20 6 2.1529 -2.6948 -2.5754 21 6 2.9463 -2.0346 -3.4910 22 6 3.2843 -0.6965 -3.2804 23 6 4.1028 -0.0035 -4.2292 24 7 4.7524 0.5462 -4.9819 25 6 2.8251 -0.0385 -2.1374 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.1495 0.5388 2.5436 30 1 4.2702 -0.6352 3.1603 31 1 3.5613 0.6366 4.1842 32 1 3.9604 -0.9499 4.8849 33 1 2.7589 -2.3640 7.0888 34 1 1.0755 -2.5564 -0.7349 35 1 1.8875 -3.7287 -2.7390 36 1 3.3015 -2.5506 -4.3707 37 1 3.0864 0.9953 -1.9663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360157584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = -14.513232 kcal Electronic energy + Delta-G solvation = -19863.843985 eV Core-core repulsion = 16797.937922 eV Total energy + Delta-G solvation = -3065.906063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23785 -39.85489 -37.59135 -36.64230 -35.13595 -34.17352 -32.20991 -31.21027 -29.91860 -27.31135 -25.76926 -24.76941 -23.57498 -22.28742 -21.01513 -19.55007 -18.41001 -17.51642 -17.17714 -17.10631 -16.50286 -16.08265 -15.67841 -15.14896 -15.07327 -14.78260 -14.41113 -14.37940 -14.11908 -13.88466 -13.72868 -13.47252 -13.04789 -13.00424 -12.86653 -12.83319 -12.70655 -12.52090 -12.24902 -12.13842 -12.08067 -11.79515 -11.06851 -10.62400 -10.47815 -9.85251 -9.70566 -9.65504 -8.14654 -6.31721 -0.13701 0.39965 1.47239 1.47582 1.58025 1.59273 1.91861 1.94504 2.38944 2.65448 2.87773 3.01569 3.16327 3.60611 3.91736 4.06420 4.21009 4.28121 4.36406 4.38326 4.59575 4.77601 4.83791 4.94241 4.95702 5.00668 5.07301 5.14585 5.30106 5.35574 5.45534 5.48467 5.63457 5.66462 5.74756 5.90451 5.95975 6.14494 6.42640 6.77413 7.05463 7.36638 7.64798 8.91414 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.003657 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.323439 B = 7653.752849 C = 7766.023185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 H 0.128 0.872 4 C 0.501 3.499 5 O -0.591 6.591 6 N -0.704 5.704 7 C 0.272 3.728 8 H -0.001 1.001 9 C -0.135 4.135 10 C -0.544 4.544 11 H 0.075 0.925 12 C 0.014 3.986 13 N -0.919 5.919 14 Si 0.969 3.031 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.259 1.259 18 C -0.076 4.076 19 C -0.064 4.064 20 C -0.122 4.122 21 C -0.063 4.063 22 C -0.048 4.048 23 C 0.284 3.716 24 N -0.467 5.467 25 C -0.062 4.062 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.405 0.595 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 3.619 -15.159 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 H 0.146 0.854 4 C 0.288 3.712 5 O -0.472 6.472 6 N -0.353 5.353 7 C 0.169 3.831 8 H 0.017 0.983 9 C -0.194 4.194 10 C -0.582 4.582 11 H 0.093 0.907 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.794 3.206 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.183 1.183 18 C -0.076 4.076 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.051 4.051 23 C -0.030 4.030 24 N -0.143 5.143 25 C -0.083 4.083 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.240 0.760 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.531 3.685 -16.242 17.260 hybrid contribution -0.510 -0.101 1.499 1.586 sum -5.041 3.584 -14.743 15.988 Atomic orbital electron populations 1.21809 0.90109 1.03102 1.04374 1.20363 0.99209 1.00664 0.88358 0.85371 1.21179 0.79941 0.84500 0.85594 1.90656 1.40405 1.28732 1.87379 1.46249 1.51980 1.31485 1.05619 1.18277 0.91747 0.91111 0.81989 0.98298 1.21907 0.97938 0.99605 0.99907 1.21573 1.10196 1.31912 0.94543 0.90699 1.25785 0.96841 0.94455 1.01542 1.70056 1.28032 1.33105 1.24514 0.85382 0.78324 0.79044 0.77813 1.20367 1.21288 1.18266 1.19330 0.98537 0.94754 0.94986 1.21365 0.97003 0.93782 0.96121 1.21310 0.97875 1.01337 0.93472 1.21402 0.95480 0.91674 0.99817 1.15947 1.01332 0.94279 0.93552 1.25832 0.92326 0.92426 0.92414 1.81260 1.11552 1.09915 1.11548 1.21141 0.94754 1.00698 0.91657 0.92730 0.90797 0.88831 0.76011 0.96990 0.94181 0.91763 0.92675 0.86455 0.82720 0.82831 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.90 71.98 0.64 -1.81 16 2 C -0.06 -1.48 2.90 -12.28 -0.04 -1.52 16 3 H 0.13 2.26 7.87 -2.38 -0.02 2.24 16 4 C 0.50 17.82 6.99 87.66 0.61 18.43 16 5 O -0.59 -26.44 14.77 -3.03 -0.04 -26.48 16 6 N -0.70 -26.84 4.96 -446.11 -2.21 -29.05 16 7 C 0.27 13.55 2.56 44.25 0.11 13.67 16 8 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 9 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 10 C -0.54 -27.73 8.73 25.60 0.22 -27.51 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.01 0.72 5.30 84.66 0.45 1.17 16 13 N -0.92 -51.88 11.32 21.45 0.24 -51.64 16 14 Si 0.97 40.89 29.54 68.60 2.03 42.92 16 15 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 C -0.08 -1.72 4.39 -19.90 -0.09 -1.80 16 19 C -0.06 -1.47 7.92 22.33 0.18 -1.29 16 20 C -0.12 -2.20 10.03 22.23 0.22 -1.98 16 21 C -0.06 -1.06 9.76 22.54 0.22 -0.84 16 22 C -0.05 -0.93 5.73 -21.36 -0.12 -1.05 16 23 C 0.28 6.35 15.33 88.33 1.35 7.70 16 24 N -0.47 -12.52 18.54 19.00 0.35 -12.16 16 25 C -0.06 -1.24 9.38 22.54 0.21 -1.02 16 26 H 0.05 1.09 7.38 -2.39 -0.02 1.07 16 27 H 0.07 1.26 7.57 -2.38 -0.02 1.24 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.40 12.67 7.96 -92.71 -0.74 11.94 16 30 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 33 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.12 2.95 7.50 -2.91 -0.02 2.93 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.15 2.35 7.94 -2.91 -0.02 2.32 16 Total: -1.00 -68.12 324.07 5.36 -62.75 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.35 Total: 17.54 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.65 Total: -3.88 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -1.62 Total: -92.85 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -68.12 5.36 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360157584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.242 kcal (2) G-P(sol) polarization free energy of solvation -68.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds