Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 O 1.21289 * 119.99568 * 120.00122 * 4 2 1 6 6 N 1.34767 * 120.00195 * 300.00281 * 4 2 1 7 7 C 1.46505 * 119.99942 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46958 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46958 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00174 * 180.02562 * 9 8 7 12 12 N 1.31524 * 119.99538 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46973 * 89.99541 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48505 * 109.46734 * 329.99834 * 13 11 9 17 17 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 18 18 C 1.38393 * 119.92056 * 299.72275 * 17 2 1 19 19 C 1.38340 * 120.30383 * 179.77025 * 18 17 2 20 20 C 1.37973 * 120.15189 * 0.50158 * 19 18 17 21 21 C 1.39619 * 119.84305 * 359.75685 * 20 19 18 22 22 C 1.43197 * 120.14751 * 179.97438 * 21 20 19 23 23 N 5.95832 * 122.91509 * 276.20938 * 2 1 3 24 24 C 1.37922 * 119.92706 * 119.99624 * 17 2 1 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 28 28 H 0.96996 * 120.00452 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47372 * 299.99905 * 7 6 4 30 30 H 1.09002 * 109.47068 * 59.99993 * 7 6 4 31 31 H 1.08998 * 109.47844 * 300.00397 * 8 7 6 32 32 H 1.09002 * 109.46838 * 60.00668 * 8 7 6 33 33 H 0.97000 * 119.99400 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.84849 * 359.97438 * 18 17 2 35 35 H 1.08000 * 119.92701 * 180.25979 * 19 18 17 36 36 H 1.07996 * 120.08079 * 179.72327 * 20 19 18 37 37 H 1.07993 * 120.07881 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9410 3.6506 8 6 1.6854 -0.2193 4.8999 9 6 2.1868 -0.9305 6.1303 10 1 2.8064 -1.8095 6.0312 11 6 1.8536 -0.4596 7.3827 12 7 1.0978 0.6100 7.5033 13 14 2.4757 -1.3406 8.9079 14 1 3.7839 -0.7661 9.3123 15 1 1.4974 -1.1696 10.0119 16 1 2.6402 -2.7865 8.6117 17 6 2.0324 -0.7103 -1.2305 18 6 1.7018 -2.0369 -1.4451 19 6 2.1547 -2.6953 -2.5744 20 6 2.9485 -2.0353 -3.4898 21 6 3.2903 -0.6984 -3.2768 22 6 4.1142 -0.0073 -4.2224 23 7 4.7678 0.5410 -4.9725 24 6 2.8252 -0.0384 -2.1374 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1489 0.5384 2.5436 29 1 1.8311 -1.9685 3.6505 30 1 3.2848 -0.9414 3.6508 31 1 2.0493 0.8081 4.9000 32 1 0.5954 -0.2187 4.9000 33 1 0.8637 0.9415 8.3844 34 1 1.0847 -2.5596 -0.7294 35 1 1.8896 -3.7294 -2.7379 36 1 3.3051 -2.5517 -4.3687 37 1 3.0864 0.9954 -1.9663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360729952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = -3.085130 kcal Electronic energy + Delta-G solvation = -19268.097339 eV Core-core repulsion = 16202.686836 eV Total energy + Delta-G solvation = -3065.410504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37433 -38.89521 -36.67803 -34.94322 -34.30251 -32.85435 -31.50571 -30.26488 -29.14411 -25.38209 -24.53452 -23.85926 -22.26342 -21.02958 -20.16129 -18.33991 -16.95887 -16.51852 -16.34947 -15.74021 -15.38585 -14.93563 -14.53023 -14.45095 -14.22656 -13.77099 -13.51374 -13.31153 -13.27765 -12.95360 -12.67998 -12.38464 -12.32579 -12.10625 -11.84448 -11.44111 -11.24418 -11.14609 -11.05470 -10.66993 -10.36927 -9.82594 -9.51557 -9.29179 -9.10781 -8.97136 -8.58958 -8.39869 -6.13005 -4.15913 0.59435 1.06672 2.43400 2.73792 2.91585 3.27098 3.33385 3.36787 3.48488 3.66128 3.80355 4.32435 4.38909 4.57913 4.76057 4.90445 4.95578 5.05814 5.12042 5.24027 5.24275 5.48020 5.56614 5.63379 5.71239 5.92616 6.01646 6.12859 6.27277 6.29881 6.33195 6.58108 6.68900 6.85318 7.25102 7.47176 7.57032 7.85033 7.94525 8.23577 8.57468 8.90134 9.49252 10.98557 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.002946 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.853192 B = 9501.288144 C = 9531.796970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.106 0.894 4 C 0.509 3.491 5 O -0.542 6.542 6 N -0.720 5.720 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.063 4.063 18 C -0.050 4.050 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.038 4.038 22 C 0.260 3.740 23 N -0.426 5.426 24 C -0.063 4.063 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.398 0.602 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -1.943 -19.179 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.124 0.876 4 C 0.293 3.707 5 O -0.420 6.420 6 N -0.369 5.369 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.063 4.063 18 C -0.069 4.069 19 C -0.140 4.140 20 C -0.092 4.092 21 C -0.041 4.041 22 C -0.055 4.055 23 N -0.101 5.101 24 C -0.083 4.083 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.231 0.769 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.601 -1.694 -20.257 20.391 hybrid contribution -0.138 -0.177 1.359 1.377 sum -1.739 -1.870 -18.898 19.070 Atomic orbital electron populations 1.21816 0.91711 1.03270 1.03159 1.20361 0.97987 1.00455 0.90972 0.87601 1.20313 0.80815 0.84934 0.84601 1.90702 1.38091 1.26455 1.86753 1.46319 1.52661 1.31824 1.06136 1.21732 0.98553 0.96247 0.83506 1.19322 0.96941 0.96037 0.90187 1.21048 1.32043 1.12540 0.90453 0.92265 1.24996 0.94964 0.95035 0.99276 1.69955 1.36613 1.22947 1.23789 0.86516 0.78605 0.80132 0.82336 1.20547 1.21151 1.19721 1.19262 0.97820 0.94456 0.94776 1.21246 0.96615 0.93412 0.95634 1.21069 0.98368 1.00378 0.94192 1.21144 0.96458 0.92213 0.99352 1.15880 1.00768 0.93744 0.93731 1.25748 0.93209 0.93398 0.93150 1.81250 1.10103 1.08610 1.10145 1.21010 0.95338 0.99932 0.92026 0.91252 0.91693 0.91156 0.76856 0.92527 0.92571 0.95963 0.95930 0.92821 0.85253 0.84900 0.85200 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.91 37.16 0.33 -0.81 16 2 C -0.08 -0.77 2.90 -92.92 -0.27 -1.04 16 3 H 0.11 0.87 7.87 -51.93 -0.41 0.46 16 4 C 0.51 7.52 7.02 -10.99 -0.08 7.44 16 5 O -0.54 -10.00 15.08 5.55 0.08 -9.91 16 6 N -0.72 -11.30 5.45 -60.29 -0.33 -11.63 16 7 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.06 -0.64 4.40 -104.68 -0.46 -1.10 16 18 C -0.05 -0.50 7.91 -39.49 -0.31 -0.81 16 19 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 20 C -0.07 -0.58 9.76 -39.16 -0.38 -0.96 16 21 C -0.04 -0.36 5.73 -106.93 -0.61 -0.97 16 22 C 0.26 2.83 15.33 -22.47 -0.34 2.49 16 23 N -0.43 -5.55 18.54 41.84 0.78 -4.77 16 24 C -0.06 -0.59 9.38 -39.17 -0.37 -0.95 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 27 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 28 H 0.40 5.31 7.89 -40.82 -0.32 4.99 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.13 1.31 7.50 -52.49 -0.39 0.91 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.02 7.94 -52.49 -0.42 0.61 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -32.05 328.87 -7.08 -39.13 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.82 Total: -0.42 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.47 Total: -8.46 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.18 Total: -41.28 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.05 -7.08 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.045 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds