Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 O 1.21289 * 119.99568 * 120.00122 * 4 2 1 6 6 N 1.34767 * 120.00195 * 300.00281 * 4 2 1 7 7 C 1.46505 * 119.99942 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46958 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46958 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00174 * 180.02562 * 9 8 7 12 12 N 1.31524 * 119.99538 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46973 * 89.99541 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48505 * 109.46734 * 329.99834 * 13 11 9 17 17 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 18 18 C 1.38393 * 119.92056 * 299.72275 * 17 2 1 19 19 C 1.38340 * 120.30383 * 179.77025 * 18 17 2 20 20 C 1.37973 * 120.15189 * 0.50158 * 19 18 17 21 21 C 1.39619 * 119.84305 * 359.75685 * 20 19 18 22 22 C 1.43197 * 120.14751 * 179.97438 * 21 20 19 23 23 N 5.95832 * 122.91509 * 276.20938 * 2 1 3 24 24 C 1.37922 * 119.92706 * 119.99624 * 17 2 1 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 28 28 H 0.96996 * 120.00452 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47372 * 299.99905 * 7 6 4 30 30 H 1.09002 * 109.47068 * 59.99993 * 7 6 4 31 31 H 1.08998 * 109.47844 * 300.00397 * 8 7 6 32 32 H 1.09002 * 109.46838 * 60.00668 * 8 7 6 33 33 H 0.97000 * 119.99400 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.84849 * 359.97438 * 18 17 2 35 35 H 1.08000 * 119.92701 * 180.25979 * 19 18 17 36 36 H 1.07996 * 120.08079 * 179.72327 * 20 19 18 37 37 H 1.07993 * 120.07881 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9410 3.6506 8 6 1.6854 -0.2193 4.8999 9 6 2.1868 -0.9305 6.1303 10 1 2.8064 -1.8095 6.0312 11 6 1.8536 -0.4596 7.3827 12 7 1.0978 0.6100 7.5033 13 14 2.4757 -1.3406 8.9079 14 1 3.7839 -0.7661 9.3123 15 1 1.4974 -1.1696 10.0119 16 1 2.6402 -2.7865 8.6117 17 6 2.0324 -0.7103 -1.2305 18 6 1.7018 -2.0369 -1.4451 19 6 2.1547 -2.6953 -2.5744 20 6 2.9485 -2.0353 -3.4898 21 6 3.2903 -0.6984 -3.2768 22 6 4.1142 -0.0073 -4.2224 23 7 4.7678 0.5410 -4.9725 24 6 2.8252 -0.0384 -2.1374 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1489 0.5384 2.5436 29 1 1.8311 -1.9685 3.6505 30 1 3.2848 -0.9414 3.6508 31 1 2.0493 0.8081 4.9000 32 1 0.5954 -0.2187 4.9000 33 1 0.8637 0.9415 8.3844 34 1 1.0847 -2.5596 -0.7294 35 1 1.8896 -3.7294 -2.7379 36 1 3.3051 -2.5517 -4.3687 37 1 3.0864 0.9954 -1.9663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360729952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = -22.112788 kcal Electronic energy + Delta-G solvation = -19268.922441 eV Core-core repulsion = 16202.686836 eV Total energy + Delta-G solvation = -3066.235605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32058 -39.90410 -37.59061 -36.53041 -35.20754 -34.70126 -32.22245 -31.66429 -30.27356 -26.92446 -25.57991 -24.71395 -23.32673 -22.57839 -21.28144 -19.27234 -18.53364 -17.81242 -17.23459 -16.73676 -16.63137 -16.40558 -16.13590 -15.35978 -15.09970 -14.89151 -14.65262 -14.40650 -14.25538 -14.12957 -13.87966 -13.54168 -13.20181 -13.08666 -12.95304 -12.88569 -12.56743 -12.51233 -12.26999 -12.11150 -11.84356 -11.61045 -11.42644 -10.67104 -10.58824 -9.94595 -9.85427 -9.72873 -8.23040 -6.32939 -0.14674 0.38081 1.42753 1.42989 1.54211 1.58828 1.73655 1.92553 2.32457 2.48740 2.85699 2.96004 3.12006 3.55912 3.85205 4.00107 4.16213 4.25326 4.32410 4.35262 4.53860 4.55191 4.58755 4.81247 4.90003 4.92351 4.98802 5.05502 5.28763 5.33288 5.36795 5.44065 5.53371 5.60675 5.62183 5.81788 5.89556 6.18728 6.42319 6.70637 6.80895 7.35816 7.36457 8.88639 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035441 B = 0.002946 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.853192 B = 9501.288144 C = 9531.796970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 H 0.130 0.870 4 C 0.508 3.492 5 O -0.580 6.580 6 N -0.717 5.717 7 C 0.142 3.858 8 C 0.022 3.978 9 C -0.546 4.546 10 H 0.057 0.943 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.962 3.038 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.078 4.078 18 C -0.062 4.062 19 C -0.122 4.122 20 C -0.063 4.063 21 C -0.048 4.048 22 C 0.283 3.717 23 N -0.468 5.468 24 C -0.062 4.062 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.410 0.590 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.265 0.735 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 -2.307 -19.876 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 H 0.148 0.852 4 C 0.296 3.704 5 O -0.460 6.460 6 N -0.368 5.368 7 C 0.018 3.982 8 C -0.015 4.015 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.787 3.213 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.191 1.191 17 C -0.079 4.079 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.084 4.084 21 C -0.051 4.051 22 C -0.031 4.031 23 N -0.144 5.144 24 C -0.082 4.082 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.246 0.754 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.865 -2.041 -20.976 21.157 hybrid contribution -0.081 -0.101 1.546 1.551 sum -1.947 -2.142 -19.430 19.644 Atomic orbital electron populations 1.21842 0.90005 1.03382 1.04471 1.20351 0.99245 1.00810 0.88172 0.85224 1.21150 0.79647 0.84394 0.85238 1.90681 1.39721 1.28262 1.87304 1.46135 1.53042 1.32158 1.05422 1.21173 0.97495 0.95568 0.83957 1.19130 0.95930 0.95282 0.91152 1.21486 1.32154 1.12817 0.92001 0.92427 1.25841 0.95097 0.95754 1.02414 1.70054 1.37632 1.24219 1.24675 0.85490 0.78183 0.79147 0.78512 1.19909 1.20546 1.19068 1.19309 0.98724 0.94776 0.95047 1.21386 0.96870 0.93655 0.96214 1.21323 0.97792 1.01405 0.93418 1.21418 0.95455 0.91667 0.99824 1.15963 1.01172 0.94328 0.93669 1.25886 0.92367 0.92442 0.92452 1.81274 1.11627 1.09926 1.11558 1.21146 0.94693 1.00671 0.91707 0.88965 0.92242 0.90803 0.75352 0.93541 0.93897 0.97393 0.97144 0.92572 0.85924 0.82619 0.82991 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.91 71.98 0.64 -1.31 16 2 C -0.06 -1.18 2.90 -12.29 -0.04 -1.22 16 3 H 0.13 1.77 7.87 -2.39 -0.02 1.76 16 4 C 0.51 14.63 7.02 87.66 0.61 15.24 16 5 O -0.58 -21.26 15.08 -3.06 -0.05 -21.31 16 6 N -0.72 -22.22 5.45 -463.05 -2.52 -24.74 16 7 C 0.14 5.77 5.61 86.38 0.48 6.26 16 8 C 0.02 1.09 5.09 29.85 0.15 1.24 16 9 C -0.55 -29.84 9.11 25.60 0.23 -29.61 16 10 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 11 C 0.01 0.43 5.46 84.65 0.46 0.89 16 12 N -0.93 -53.32 13.29 21.45 0.28 -53.03 16 13 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 C -0.08 -1.45 4.40 -19.90 -0.09 -1.54 16 18 C -0.06 -1.16 7.91 22.33 0.18 -0.98 16 19 C -0.12 -1.75 10.03 22.23 0.22 -1.53 16 20 C -0.06 -0.88 9.76 22.54 0.22 -0.66 16 21 C -0.05 -0.81 5.73 -21.36 -0.12 -0.93 16 22 C 0.28 5.77 15.33 88.33 1.35 7.13 16 23 N -0.47 -11.84 18.54 19.00 0.35 -11.48 16 24 C -0.06 -1.03 9.38 22.54 0.21 -0.82 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.90 7.39 -2.39 -0.02 0.89 16 27 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 28 H 0.41 10.63 7.89 -92.71 -0.73 9.90 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.12 2.40 7.50 -2.91 -0.02 2.37 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.15 1.93 7.94 -2.91 -0.02 1.91 16 Total: -1.00 -69.04 328.87 4.98 -64.06 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.35 Total: 9.40 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.53 Total: -7.84 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.89 Total: -89.25 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.04 4.98 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.952 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds