Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48507 * 109.46904 * 330.00133 * 13 11 9 17 17 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 18 18 C 1.38386 * 119.92555 * 60.00082 * 17 2 1 19 19 C 1.38333 * 120.30534 * 179.97438 * 18 17 2 20 20 C 1.37968 * 120.15513 * 359.97438 * 19 18 17 21 21 C 1.39617 * 119.84224 * 0.02562 * 20 19 18 22 22 C 1.43203 * 120.14900 * 180.02562 * 21 20 19 23 23 N 5.95828 * 122.93285 * 83.80021 * 2 1 3 24 24 C 1.37930 * 119.92422 * 239.72606 * 17 2 1 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 30 30 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 31 31 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 32 32 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 33 33 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 34 34 H 1.07996 * 119.84391 * 359.97438 * 18 17 2 35 35 H 1.08002 * 119.92348 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.08170 * 180.02562 * 20 19 18 37 37 H 1.07995 * 120.07423 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1864 -0.9300 -6.1305 10 1 2.8079 -1.8077 -6.0314 11 6 1.8526 -0.4595 -7.3828 12 7 1.0962 0.6095 -7.5034 13 14 2.4747 -1.3404 -8.9080 14 1 1.4966 -2.3825 -9.3113 15 1 2.6389 -0.3616 -10.0126 16 1 3.7832 -1.9776 -8.6126 17 6 2.0323 -0.7104 1.2304 18 6 1.6971 -2.0354 1.4478 19 6 2.1544 -2.6953 2.5743 20 6 2.9491 -2.0358 3.4892 21 6 3.2911 -0.6990 3.2761 22 6 4.1161 -0.0083 4.2212 23 7 4.7692 0.5401 4.9716 24 6 2.8299 -0.0403 2.1345 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1487 0.5387 -2.5435 29 1 3.2846 -0.9412 -3.6510 30 1 1.8308 -1.9683 -3.6506 31 1 0.5941 -0.2197 -4.8996 32 1 2.0475 0.8080 -4.9003 33 1 0.8616 0.9409 -8.3843 34 1 1.0757 -2.5565 0.7347 35 1 1.8886 -3.7292 2.7381 36 1 3.3057 -2.5523 4.3681 37 1 3.0947 0.9922 1.9611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360729953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = -3.072632 kcal Electronic energy + Delta-G solvation = -19268.041626 eV Core-core repulsion = 16202.631664 eV Total energy + Delta-G solvation = -3065.409962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37466 -38.89580 -36.67937 -34.94267 -34.30399 -32.85491 -31.50687 -30.26484 -29.14421 -25.38306 -24.53578 -23.85652 -22.26469 -21.02907 -20.16077 -18.33903 -16.95858 -16.51932 -16.34965 -15.74316 -15.38605 -14.93531 -14.53054 -14.45035 -14.22659 -13.77076 -13.51432 -13.31274 -13.27702 -12.95440 -12.67720 -12.38625 -12.32582 -12.10724 -11.84525 -11.43944 -11.24510 -11.14539 -11.05499 -10.66954 -10.36916 -9.82596 -9.51573 -9.29186 -9.10875 -8.97126 -8.58946 -8.39868 -6.12950 -4.15893 0.59398 1.06701 2.43428 2.73777 2.91624 3.27020 3.33381 3.36948 3.48611 3.65925 3.80436 4.32408 4.38939 4.57901 4.75999 4.90426 4.95569 5.05714 5.12030 5.24006 5.24319 5.48067 5.56566 5.63365 5.71190 5.92569 6.01642 6.12848 6.27239 6.29984 6.33123 6.58075 6.68932 6.85382 7.25090 7.47182 7.57044 7.85028 7.94540 8.23631 8.57507 8.90157 9.49282 10.98615 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.002946 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.067842 B = 9500.802603 C = 9531.453887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.106 0.894 4 C 0.509 3.491 5 O -0.542 6.542 6 N -0.720 5.720 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.062 4.062 18 C -0.051 4.051 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.038 4.038 22 C 0.260 3.740 23 N -0.426 5.426 24 C -0.063 4.063 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.398 0.602 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -1.938 19.182 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.124 0.876 4 C 0.293 3.707 5 O -0.420 6.420 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.063 4.063 18 C -0.069 4.069 19 C -0.140 4.140 20 C -0.092 4.092 21 C -0.041 4.041 22 C -0.055 4.055 23 N -0.101 5.101 24 C -0.083 4.083 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.231 0.769 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.585 -1.683 20.261 20.393 hybrid contribution -0.156 -0.189 -1.360 1.382 sum -1.741 -1.873 18.901 19.073 Atomic orbital electron populations 1.21813 0.91713 1.03270 1.03163 1.20360 0.97988 1.00454 0.90971 0.87599 1.20316 0.80814 0.84934 0.84601 1.90701 1.38085 1.26452 1.86755 1.46323 1.52672 1.31820 1.06135 1.21732 0.98553 0.96246 0.83505 1.19322 0.96922 0.96051 0.90188 1.21047 1.31969 1.12622 0.90453 0.92265 1.24993 0.94996 0.94996 0.99275 1.69947 1.36656 1.22899 1.23802 0.86518 0.79375 0.79365 0.82341 1.20540 1.21155 1.19720 1.19262 0.97760 0.94483 0.94795 1.21241 0.96652 0.93403 0.95638 1.21065 0.98330 1.00368 0.94226 1.21142 0.96481 0.92198 0.99351 1.15880 1.00768 0.93764 0.93704 1.25747 0.93208 0.93397 0.93152 1.81248 1.10125 1.08608 1.10126 1.21011 0.95344 0.99943 0.92007 0.91161 0.91693 0.91246 0.76858 0.92564 0.92537 0.95938 0.95961 0.92815 0.85260 0.84900 0.85199 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16 2 C -0.08 -0.77 2.90 -92.93 -0.27 -1.04 16 3 H 0.11 0.87 7.87 -51.93 -0.41 0.46 16 4 C 0.51 7.52 7.02 -10.99 -0.08 7.44 16 5 O -0.54 -10.00 15.10 5.55 0.08 -9.92 16 6 N -0.72 -11.31 5.45 -60.29 -0.33 -11.63 16 7 C 0.12 2.45 5.61 -4.04 -0.02 2.42 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 17 C -0.06 -0.64 4.39 -104.68 -0.46 -1.10 16 18 C -0.05 -0.50 7.92 -39.49 -0.31 -0.82 16 19 C -0.12 -1.01 10.03 -39.65 -0.40 -1.41 16 20 C -0.07 -0.58 9.76 -39.17 -0.38 -0.96 16 21 C -0.04 -0.36 5.73 -106.93 -0.61 -0.97 16 22 C 0.26 2.83 15.33 -22.47 -0.34 2.49 16 23 N -0.43 -5.55 18.54 41.84 0.78 -4.77 16 24 C -0.06 -0.59 9.38 -39.17 -0.37 -0.95 16 25 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 26 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.40 5.31 7.89 -40.82 -0.32 4.99 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.13 1.30 7.50 -52.49 -0.39 0.91 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.02 7.94 -52.49 -0.42 0.61 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -32.05 328.88 -7.08 -39.14 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.82 Total: -0.42 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.47 Total: -8.46 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.18 Total: -41.28 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.05 -7.08 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.063 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds