Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99822 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48507 * 109.46904 * 330.00133 * 13 11 9 17 17 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 18 18 C 1.38386 * 119.92555 * 60.00082 * 17 2 1 19 19 C 1.38333 * 120.30534 * 179.97438 * 18 17 2 20 20 C 1.37968 * 120.15513 * 359.97438 * 19 18 17 21 21 C 1.39617 * 119.84224 * 0.02562 * 20 19 18 22 22 C 1.43203 * 120.14900 * 180.02562 * 21 20 19 23 23 N 5.95828 * 122.93285 * 83.80021 * 2 1 3 24 24 C 1.37930 * 119.92422 * 239.72606 * 17 2 1 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 30 30 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 31 31 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 32 32 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 33 33 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 34 34 H 1.07996 * 119.84391 * 359.97438 * 18 17 2 35 35 H 1.08002 * 119.92348 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.08170 * 180.02562 * 20 19 18 37 37 H 1.07995 * 120.07423 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1864 -0.9300 -6.1305 10 1 2.8079 -1.8077 -6.0314 11 6 1.8526 -0.4595 -7.3828 12 7 1.0962 0.6095 -7.5034 13 14 2.4747 -1.3404 -8.9080 14 1 1.4966 -2.3825 -9.3113 15 1 2.6389 -0.3616 -10.0126 16 1 3.7832 -1.9776 -8.6126 17 6 2.0323 -0.7104 1.2304 18 6 1.6971 -2.0354 1.4478 19 6 2.1544 -2.6953 2.5743 20 6 2.9491 -2.0358 3.4892 21 6 3.2911 -0.6990 3.2761 22 6 4.1161 -0.0083 4.2212 23 7 4.7692 0.5401 4.9716 24 6 2.8299 -0.0403 2.1345 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1487 0.5387 -2.5435 29 1 3.2846 -0.9412 -3.6510 30 1 1.8308 -1.9683 -3.6506 31 1 0.5941 -0.2197 -4.8996 32 1 2.0475 0.8080 -4.9003 33 1 0.8616 0.9409 -8.3843 34 1 1.0757 -2.5565 0.7347 35 1 1.8886 -3.7292 2.7381 36 1 3.3057 -2.5523 4.3681 37 1 3.0947 0.9922 1.9611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360729953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = -22.106828 kcal Electronic energy + Delta-G solvation = -19268.867010 eV Core-core repulsion = 16202.631664 eV Total energy + Delta-G solvation = -3066.235346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32070 -39.90496 -37.59189 -36.53048 -35.20894 -34.70197 -32.22333 -31.66421 -30.27367 -26.92455 -25.58215 -24.71082 -23.32741 -22.57862 -21.28118 -19.27123 -18.53393 -17.81231 -17.23544 -16.73712 -16.63282 -16.40553 -16.13670 -15.35932 -15.09974 -14.89231 -14.65286 -14.40682 -14.25525 -14.13042 -13.88066 -13.53815 -13.20187 -13.08675 -12.95699 -12.88209 -12.57237 -12.50990 -12.26838 -12.11043 -11.84429 -11.61093 -11.42671 -10.67229 -10.58771 -9.94573 -9.85465 -9.72904 -8.22984 -6.32928 -0.14684 0.38106 1.42708 1.43084 1.54261 1.58849 1.73667 1.92542 2.32503 2.48783 2.85651 2.95995 3.12042 3.55894 3.85213 4.00114 4.16139 4.25302 4.32418 4.35235 4.53851 4.55195 4.58751 4.81302 4.90003 4.92302 4.98832 5.05448 5.28736 5.33295 5.36792 5.44112 5.53386 5.60619 5.62183 5.81769 5.89559 6.18773 6.42302 6.70621 6.80903 7.35825 7.36483 8.88694 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.002946 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.067842 B = 9500.802603 C = 9531.453887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 H 0.130 0.870 4 C 0.508 3.492 5 O -0.580 6.580 6 N -0.717 5.717 7 C 0.142 3.858 8 C 0.023 3.977 9 C -0.546 4.546 10 H 0.057 0.943 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.962 3.038 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.078 4.078 18 C -0.063 4.063 19 C -0.122 4.122 20 C -0.063 4.063 21 C -0.048 4.048 22 C 0.283 3.717 23 N -0.468 5.468 24 C -0.062 4.062 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.410 0.590 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.265 0.735 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -2.317 19.875 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 H 0.148 0.852 4 C 0.296 3.704 5 O -0.460 6.460 6 N -0.368 5.368 7 C 0.018 3.982 8 C -0.015 4.015 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.787 3.213 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.078 4.078 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.084 4.084 21 C -0.051 4.051 22 C -0.031 4.031 23 N -0.144 5.144 24 C -0.082 4.082 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.246 0.754 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.870 -2.046 20.976 21.158 hybrid contribution -0.094 -0.110 -1.546 1.553 sum -1.964 -2.156 19.430 19.647 Atomic orbital electron populations 1.21839 0.90006 1.03385 1.04473 1.20349 0.99248 1.00808 0.88170 0.85226 1.21152 0.79645 0.84393 0.85238 1.90680 1.39716 1.28261 1.87307 1.46139 1.53052 1.32154 1.05422 1.21173 0.97481 0.95580 0.83958 1.19130 0.95916 0.95293 0.91153 1.21484 1.32084 1.12898 0.92002 0.92430 1.25838 0.95129 0.95714 1.02414 1.70046 1.37672 1.24174 1.24688 0.85491 0.79010 0.78340 0.78494 1.19728 1.20623 1.19167 1.19310 0.98662 0.94811 0.95064 1.21383 0.96900 0.93640 0.96215 1.21321 0.97757 1.01396 0.93456 1.21417 0.95478 0.91652 0.99823 1.15962 1.01172 0.94350 0.93640 1.25886 0.92367 0.92442 0.92454 1.81271 1.11649 1.09924 1.11539 1.21148 0.94708 1.00677 0.91697 0.90809 0.92236 0.88960 0.75353 0.93913 0.93530 0.97147 0.97396 0.92567 0.85907 0.82616 0.82990 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.90 71.98 0.64 -1.31 16 2 C -0.06 -1.18 2.90 -12.29 -0.04 -1.22 16 3 H 0.13 1.78 7.87 -2.39 -0.02 1.76 16 4 C 0.51 14.63 7.02 87.66 0.62 15.25 16 5 O -0.58 -21.26 15.10 -3.04 -0.05 -21.31 16 6 N -0.72 -22.22 5.45 -463.04 -2.52 -24.75 16 7 C 0.14 5.77 5.61 86.38 0.48 6.26 16 8 C 0.02 1.09 5.09 29.85 0.15 1.24 16 9 C -0.55 -29.85 9.11 25.60 0.23 -29.62 16 10 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 11 C 0.01 0.43 5.46 84.65 0.46 0.89 16 12 N -0.93 -53.31 13.29 21.45 0.28 -53.03 16 13 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 C -0.08 -1.45 4.39 -19.90 -0.09 -1.54 16 18 C -0.06 -1.16 7.92 22.33 0.18 -0.98 16 19 C -0.12 -1.75 10.03 22.23 0.22 -1.52 16 20 C -0.06 -0.88 9.76 22.54 0.22 -0.66 16 21 C -0.05 -0.81 5.73 -21.36 -0.12 -0.93 16 22 C 0.28 5.78 15.33 88.33 1.35 7.13 16 23 N -0.47 -11.84 18.54 19.00 0.35 -11.49 16 24 C -0.06 -1.04 9.38 22.54 0.21 -0.83 16 25 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16 26 H 0.06 0.90 7.38 -2.39 -0.02 0.89 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.41 10.63 7.89 -92.71 -0.73 9.90 16 29 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.12 2.39 7.50 -2.91 -0.02 2.37 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.15 1.94 7.94 -2.91 -0.02 1.91 16 Total: -1.00 -69.05 328.88 4.98 -64.08 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.35 Total: 9.40 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.53 Total: -7.83 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.89 Total: -89.26 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.05 4.98 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.970 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds