Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46688 * 2 1 4 4 C 1.37098 * 120.00291 * 263.78832 * 3 2 1 5 5 H 1.08001 * 120.00134 * 193.82742 * 4 3 2 6 6 C 1.38949 * 119.99808 * 13.82743 * 4 3 2 7 7 N 1.31408 * 119.99843 * 14.08415 * 6 4 3 8 8 Si 1.86799 * 120.00088 * 194.08742 * 6 4 3 9 9 H 1.48506 * 109.46877 * 59.99581 * 8 6 4 10 10 H 1.48497 * 109.47406 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47123 * 300.00392 * 8 6 4 12 12 C 1.34785 * 119.99663 * 83.79322 * 3 2 1 13 13 O 1.21287 * 120.00148 * 5.22217 * 12 3 2 14 14 C 1.50700 * 119.99531 * 185.22267 * 12 3 2 15 15 H 1.08999 * 109.47286 * 49.32018 * 14 12 3 16 16 C 1.53003 * 109.47592 * 289.31500 * 14 12 3 17 17 C 1.50699 * 109.47060 * 169.31431 * 14 12 3 18 18 C 1.38388 * 119.92467 * 59.97615 * 17 14 12 19 19 C 1.38335 * 120.30776 * 180.02562 * 18 17 14 20 20 C 1.37969 * 120.15233 * 359.97438 * 19 18 17 21 21 C 1.39612 * 119.84328 * 359.77054 * 20 19 18 22 22 C 1.43202 * 120.15009 * 180.25030 * 21 20 19 23 23 N 8.99776 * 77.86283 * 29.33525 * 2 1 3 24 24 C 1.37924 * 119.92672 * 240.00217 * 17 14 12 25 25 H 1.09006 * 109.46857 * 173.27220 * 1 2 3 26 26 H 1.08996 * 109.47300 * 293.26814 * 1 2 3 27 27 H 1.08993 * 109.47018 * 53.27563 * 1 2 3 28 28 H 1.09001 * 109.47341 * 240.00659 * 2 1 3 29 29 H 1.08996 * 109.47588 * 119.99754 * 2 1 3 30 30 H 0.97008 * 119.99400 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46834 * 55.91385 * 16 14 12 32 32 H 1.08994 * 109.47577 * 175.92269 * 16 14 12 33 33 H 1.09004 * 109.46546 * 295.92446 * 16 14 12 34 34 H 1.08002 * 119.84493 * 0.04961 * 18 17 14 35 35 H 1.07999 * 119.92510 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.07960 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.07555 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3678 1.9848 -1.1803 5 1 2.9308 2.9064 -1.1696 6 6 1.9978 1.4108 -2.3904 7 7 1.0918 0.4593 -2.4164 8 14 2.7883 1.9915 -3.9801 9 1 4.2554 1.7718 -3.9124 10 1 2.2256 1.2259 -5.1213 11 1 2.5128 3.4384 -4.1702 12 6 2.1238 2.0587 1.1605 13 8 1.9057 1.4965 2.2128 14 6 2.5129 3.5145 1.1503 15 1 1.8944 4.0509 0.4306 16 6 3.9852 3.6464 0.7556 17 6 2.3067 4.0992 2.5239 18 6 2.9917 3.5762 3.6067 19 6 2.8081 4.1065 4.8711 20 6 1.9399 5.1619 5.0606 21 6 1.2496 5.6979 3.9718 22 6 0.3510 6.7968 4.1602 23 7 -0.3618 7.6686 4.3096 24 6 1.4354 5.1539 2.6991 25 1 -0.3633 -1.0207 -0.1204 26 1 -0.3634 0.4059 0.9440 27 1 -0.3633 0.6145 -0.8236 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8332 0.0589 -3.2613 31 1 4.1487 3.1593 -0.2057 32 1 4.2475 4.7014 0.6777 33 1 4.6084 3.1720 1.5138 34 1 3.6731 2.7506 3.4638 35 1 3.3455 3.6933 5.7118 36 1 1.7978 5.5752 6.0482 37 1 0.9014 5.5611 1.8533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361716066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 29.083571 kcal Electronic energy + Delta-G solvation = -20566.775064 eV Core-core repulsion = 17502.759500 eV Total energy + Delta-G solvation = -3064.015564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80545 -38.39855 -36.38152 -35.10070 -33.64461 -31.56585 -31.09133 -30.15141 -28.70793 -25.11778 -24.20762 -23.45801 -22.46995 -21.03085 -19.22928 -18.16195 -16.68514 -16.36194 -16.01740 -15.14830 -14.51786 -14.31816 -14.21500 -13.92006 -13.69580 -13.21771 -13.10098 -12.96057 -12.68599 -12.46737 -12.25877 -12.02946 -11.78130 -11.45806 -11.36144 -11.26120 -11.13197 -10.84535 -10.66828 -10.51155 -10.41115 -10.05696 -9.75575 -8.95611 -8.82767 -8.55264 -8.27356 -7.79644 -6.38399 -3.97266 0.99111 1.51217 2.72395 3.05597 3.09930 3.15521 3.15698 3.82970 3.95024 4.01609 4.06625 4.74096 4.96896 5.00662 5.04112 5.24509 5.52058 5.57076 5.69807 5.83783 5.83945 6.05635 6.16707 6.32102 6.39630 6.42032 6.49783 6.58746 6.65453 6.77734 6.84733 6.91112 7.00883 7.06115 7.31040 7.43505 7.54537 7.72425 7.76860 8.38912 9.00835 9.49109 9.88705 10.56806 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005098 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.880603 B = 5491.156382 C = 5774.791220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.135 3.865 3 N -0.436 5.436 4 C -0.339 4.339 5 H 0.108 0.892 6 C 0.034 3.966 7 N -0.861 5.861 8 Si 0.919 3.081 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.458 3.542 13 O -0.604 6.604 14 C -0.060 4.060 15 H 0.097 0.903 16 C -0.147 4.147 17 C -0.050 4.050 18 C -0.043 4.043 19 C -0.128 4.128 20 C -0.078 4.078 21 C -0.045 4.045 22 C 0.266 3.734 23 N -0.436 5.436 24 C -0.066 4.066 25 H 0.034 0.966 26 H 0.021 0.979 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 4.492 5.667 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 N -0.153 5.153 4 C -0.467 4.467 5 H 0.125 0.875 6 C -0.170 4.170 7 N -0.500 5.500 8 Si 0.746 3.254 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.246 3.754 13 O -0.491 6.491 14 C -0.081 4.081 15 H 0.115 0.885 16 C -0.204 4.204 17 C -0.051 4.051 18 C -0.062 4.062 19 C -0.146 4.146 20 C -0.099 4.099 21 C -0.049 4.049 22 C -0.049 4.049 23 N -0.112 5.112 24 C -0.087 4.087 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.827 5.405 6.213 9.081 hybrid contribution 0.412 -0.149 -1.071 1.157 sum 4.239 5.257 5.142 8.488 Atomic orbital electron populations 1.21920 0.96952 1.00119 1.00296 1.21230 0.94242 0.83059 1.00240 1.43767 1.54991 1.11344 1.05226 1.19928 1.34054 1.09844 0.82839 0.87472 1.25282 0.95461 0.96814 0.99482 1.70138 1.27179 1.25817 1.26858 0.86114 0.79491 0.78838 0.80966 1.19850 1.20872 1.19828 1.19770 0.83720 0.87732 0.84190 1.90533 1.57517 1.70019 1.31049 1.20068 0.99041 0.95931 0.93108 0.88522 1.21945 0.93461 1.01565 1.03435 1.19548 0.95460 0.94333 0.95758 1.21274 0.96906 0.96442 0.91574 1.21030 0.99331 0.96710 0.97568 1.21030 0.95504 0.96138 0.97234 1.15882 0.99092 0.94670 0.95227 1.25818 0.92961 0.92857 0.93247 1.81206 1.10536 1.11420 1.08027 1.21060 0.96860 0.95433 0.95328 0.94728 0.95939 0.90017 0.88302 0.94790 0.92120 0.89516 0.92732 0.92786 0.85185 0.85363 0.85661 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.50 37.16 0.35 -2.71 16 2 C 0.14 3.18 5.28 -4.04 -0.02 3.16 16 3 N -0.44 -10.24 2.64 -114.81 -0.30 -10.55 16 4 C -0.34 -7.80 8.49 -14.93 -0.13 -7.92 16 5 H 0.11 2.26 4.54 -52.49 -0.24 2.02 16 6 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 7 N -0.86 -20.72 8.20 55.50 0.45 -20.26 16 8 Si 0.92 18.10 29.58 -169.99 -5.03 13.08 16 9 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 C 0.46 10.15 6.82 -10.98 -0.07 10.08 16 13 O -0.60 -14.64 14.41 5.55 0.08 -14.56 16 14 C -0.06 -1.06 2.07 -92.92 -0.19 -1.26 16 15 H 0.10 1.70 7.49 -51.93 -0.39 1.32 16 16 C -0.15 -2.26 8.68 37.16 0.32 -1.93 16 17 C -0.05 -0.80 4.50 -104.68 -0.47 -1.27 16 18 C -0.04 -0.64 7.79 -39.49 -0.31 -0.95 16 19 C -0.13 -1.56 10.03 -39.64 -0.40 -1.96 16 20 C -0.08 -0.93 9.76 -39.17 -0.38 -1.31 16 21 C -0.05 -0.61 5.73 -106.93 -0.61 -1.22 16 22 C 0.27 3.79 15.33 -22.47 -0.34 3.44 16 23 N -0.44 -6.95 18.54 41.84 0.78 -6.17 16 24 C -0.07 -0.96 9.38 -39.17 -0.37 -1.32 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 2.00 6.48 -51.93 -0.34 1.67 16 28 H 0.10 2.42 5.87 -51.93 -0.30 2.11 16 29 H 0.03 0.80 7.55 -51.93 -0.39 0.41 16 30 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 31 H 0.09 1.45 5.34 -51.93 -0.28 1.17 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.79 7.25 -51.93 -0.38 0.42 16 34 H 0.13 2.00 7.21 -52.49 -0.38 1.62 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.72 7.94 -52.49 -0.42 1.30 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -26.91 311.65 -6.39 -33.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.36 Total: 4.94 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.71 Total: -4.48 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.93 Total: -36.98 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.91 -6.39 -33.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361716066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.392 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds