Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46688 * 2 1 4 4 C 1.37098 * 120.00291 * 263.78832 * 3 2 1 5 5 H 1.08001 * 120.00134 * 193.82742 * 4 3 2 6 6 C 1.38949 * 119.99808 * 13.82743 * 4 3 2 7 7 N 1.31408 * 119.99843 * 14.08415 * 6 4 3 8 8 Si 1.86799 * 120.00088 * 194.08742 * 6 4 3 9 9 H 1.48506 * 109.46877 * 59.99581 * 8 6 4 10 10 H 1.48497 * 109.47406 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47123 * 300.00392 * 8 6 4 12 12 C 1.34785 * 119.99663 * 83.79322 * 3 2 1 13 13 O 1.21287 * 120.00148 * 5.22217 * 12 3 2 14 14 C 1.50700 * 119.99531 * 185.22267 * 12 3 2 15 15 H 1.08999 * 109.47286 * 49.32018 * 14 12 3 16 16 C 1.53003 * 109.47592 * 289.31500 * 14 12 3 17 17 C 1.50699 * 109.47060 * 169.31431 * 14 12 3 18 18 C 1.38388 * 119.92467 * 59.97615 * 17 14 12 19 19 C 1.38335 * 120.30776 * 180.02562 * 18 17 14 20 20 C 1.37969 * 120.15233 * 359.97438 * 19 18 17 21 21 C 1.39612 * 119.84328 * 359.77054 * 20 19 18 22 22 C 1.43202 * 120.15009 * 180.25030 * 21 20 19 23 23 N 8.99776 * 77.86283 * 29.33525 * 2 1 3 24 24 C 1.37924 * 119.92672 * 240.00217 * 17 14 12 25 25 H 1.09006 * 109.46857 * 173.27220 * 1 2 3 26 26 H 1.08996 * 109.47300 * 293.26814 * 1 2 3 27 27 H 1.08993 * 109.47018 * 53.27563 * 1 2 3 28 28 H 1.09001 * 109.47341 * 240.00659 * 2 1 3 29 29 H 1.08996 * 109.47588 * 119.99754 * 2 1 3 30 30 H 0.97008 * 119.99400 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46834 * 55.91385 * 16 14 12 32 32 H 1.08994 * 109.47577 * 175.92269 * 16 14 12 33 33 H 1.09004 * 109.46546 * 295.92446 * 16 14 12 34 34 H 1.08002 * 119.84493 * 0.04961 * 18 17 14 35 35 H 1.07999 * 119.92510 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.07960 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.07555 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3678 1.9848 -1.1803 5 1 2.9308 2.9064 -1.1696 6 6 1.9978 1.4108 -2.3904 7 7 1.0918 0.4593 -2.4164 8 14 2.7883 1.9915 -3.9801 9 1 4.2554 1.7718 -3.9124 10 1 2.2256 1.2259 -5.1213 11 1 2.5128 3.4384 -4.1702 12 6 2.1238 2.0587 1.1605 13 8 1.9057 1.4965 2.2128 14 6 2.5129 3.5145 1.1503 15 1 1.8944 4.0509 0.4306 16 6 3.9852 3.6464 0.7556 17 6 2.3067 4.0992 2.5239 18 6 2.9917 3.5762 3.6067 19 6 2.8081 4.1065 4.8711 20 6 1.9399 5.1619 5.0606 21 6 1.2496 5.6979 3.9718 22 6 0.3510 6.7968 4.1602 23 7 -0.3618 7.6686 4.3096 24 6 1.4354 5.1539 2.6991 25 1 -0.3633 -1.0207 -0.1204 26 1 -0.3634 0.4059 0.9440 27 1 -0.3633 0.6145 -0.8236 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8332 0.0589 -3.2613 31 1 4.1487 3.1593 -0.2057 32 1 4.2475 4.7014 0.6777 33 1 4.6084 3.1720 1.5138 34 1 3.6731 2.7506 3.4638 35 1 3.3455 3.6933 5.7118 36 1 1.7978 5.5752 6.0482 37 1 0.9014 5.5611 1.8533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361716066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 16.816835 kcal Electronic energy + Delta-G solvation = -20567.306990 eV Core-core repulsion = 17502.759500 eV Total energy + Delta-G solvation = -3064.547490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16177 -39.85202 -37.60292 -36.83258 -35.01073 -33.34780 -32.16610 -31.74424 -30.08393 -26.83300 -25.55694 -24.71488 -23.93286 -22.38616 -20.89507 -19.57185 -18.21741 -17.86713 -17.15290 -16.48307 -16.18227 -15.84814 -15.63445 -15.13495 -15.04894 -14.73455 -14.44961 -14.26054 -14.07788 -13.86708 -13.67955 -13.47832 -13.08191 -13.05151 -12.78571 -12.74784 -12.48760 -12.45367 -12.07574 -12.04292 -11.87555 -11.66078 -11.51052 -10.76277 -10.16679 -9.77125 -9.64333 -9.60162 -8.14558 -5.78273 -0.09403 0.45750 1.49440 1.55040 1.59615 1.61996 1.97450 2.13889 2.36261 2.82394 2.94333 3.19660 3.25524 3.79813 3.99255 4.17615 4.32703 4.40803 4.47740 4.51556 4.65089 4.66560 4.87046 4.93743 4.98574 5.05878 5.08044 5.12055 5.19887 5.28257 5.37311 5.48507 5.51921 5.64929 5.75887 5.85888 5.94475 5.98856 6.43134 6.58790 7.22901 7.72749 8.12137 8.81445 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005098 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.880603 B = 5491.156382 C = 5774.791220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.137 3.863 3 N -0.451 5.451 4 C -0.352 4.352 5 H 0.125 0.875 6 C -0.008 4.008 7 N -0.887 5.887 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.266 1.266 12 C 0.450 3.550 13 O -0.630 6.630 14 C -0.053 4.053 15 H 0.094 0.906 16 C -0.140 4.140 17 C -0.072 4.072 18 C -0.055 4.055 19 C -0.121 4.121 20 C -0.064 4.064 21 C -0.048 4.048 22 C 0.285 3.715 23 N -0.467 5.467 24 C -0.071 4.071 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 5.785 6.441 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.013 3.987 3 N -0.169 5.169 4 C -0.479 4.479 5 H 0.142 0.858 6 C -0.210 4.210 7 N -0.527 5.527 8 Si 0.808 3.192 9 H -0.193 1.193 10 H -0.216 1.216 11 H -0.191 1.191 12 C 0.239 3.761 13 O -0.518 6.518 14 C -0.074 4.074 15 H 0.112 0.888 16 C -0.197 4.197 17 C -0.072 4.072 18 C -0.074 4.074 19 C -0.138 4.138 20 C -0.084 4.084 21 C -0.052 4.052 22 C -0.029 4.029 23 N -0.143 5.143 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.809 6.714 6.993 10.821 hybrid contribution 0.101 -0.588 -1.215 1.354 sum 4.910 6.126 5.778 9.748 Atomic orbital electron populations 1.21744 0.96464 1.00676 0.98783 1.21129 0.94586 0.83768 0.99190 1.43995 1.55476 1.11348 1.06063 1.20364 1.34244 1.10492 0.82782 0.85796 1.26060 0.95729 0.97013 1.02153 1.70245 1.28201 1.26900 1.27310 0.85126 0.78603 0.78445 0.77055 1.19318 1.21572 1.19080 1.20581 0.82668 0.89491 0.83329 1.90496 1.58342 1.71153 1.31816 1.19988 1.00292 0.92490 0.94651 0.88819 1.21889 0.91944 1.03303 1.02540 1.19441 0.97159 0.95527 0.95094 1.21334 0.96974 0.96489 0.92620 1.21335 0.98983 0.96198 0.97310 1.21396 0.93787 0.95100 0.98093 1.15920 0.99327 0.94542 0.95398 1.25834 0.92341 0.92399 0.92315 1.81232 1.11558 1.12451 1.09074 1.21090 0.96606 0.95280 0.96157 0.93060 0.96943 0.91787 0.89346 0.95566 0.92342 0.90956 0.89897 0.92411 0.86288 0.82213 0.82463 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 9.50 71.98 0.68 -4.81 16 2 C 0.14 6.59 5.28 86.38 0.46 7.04 16 3 N -0.45 -21.50 2.64 -635.53 -1.68 -23.18 16 4 C -0.35 -16.18 8.49 84.04 0.71 -15.46 16 5 H 0.12 5.14 4.54 -2.91 -0.01 5.13 16 6 C -0.01 -0.37 5.11 84.93 0.43 0.07 16 7 N -0.89 -43.20 8.20 21.66 0.18 -43.02 16 8 Si 0.98 36.76 29.58 68.60 2.03 38.78 16 9 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 10 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 12 C 0.45 20.10 6.82 87.66 0.60 20.70 16 13 O -0.63 -30.87 14.41 -3.05 -0.04 -30.92 16 14 C -0.05 -1.85 2.07 -12.29 -0.03 -1.87 16 15 H 0.09 3.27 7.49 -2.39 -0.02 3.26 16 16 C -0.14 -4.12 8.68 71.98 0.62 -3.49 16 17 C -0.07 -2.20 4.50 -19.90 -0.09 -2.29 16 18 C -0.06 -1.55 7.79 22.33 0.17 -1.38 16 19 C -0.12 -2.56 10.03 22.23 0.22 -2.33 16 20 C -0.06 -1.27 9.76 22.54 0.22 -1.05 16 21 C -0.05 -1.18 5.73 -21.36 -0.12 -1.30 16 22 C 0.29 7.57 15.33 88.33 1.35 8.92 16 23 N -0.47 -14.20 18.54 19.00 0.35 -13.85 16 24 C -0.07 -1.94 9.38 22.54 0.21 -1.73 16 25 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 3.20 6.48 -2.39 -0.02 3.18 16 28 H 0.09 4.44 5.87 -2.39 -0.01 4.43 16 29 H 0.03 1.27 7.55 -2.39 -0.02 1.25 16 30 H 0.27 12.48 8.31 -92.70 -0.77 11.71 16 31 H 0.07 2.34 5.34 -2.39 -0.01 2.33 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.64 7.25 -2.39 -0.02 1.62 16 34 H 0.12 3.57 7.21 -2.91 -0.02 3.55 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.13 3.44 7.94 -2.91 -0.02 3.41 16 Total: -1.00 -57.87 311.65 7.38 -50.49 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.09 Total: 20.68 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.45 Total: 1.01 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.15 Total: -80.04 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.04 Total: -30.92 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.78 kcal Total: -57.87 7.38 -50.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361716066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.302 kcal (2) G-P(sol) polarization free energy of solvation -57.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds