Wall clock time and date at job start Mon Mar 30 2020 01:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00238 * 2 1 4 4 O 1.21673 * 119.99390 * 359.97438 * 3 2 1 5 5 C 1.46907 * 120.00002 * 179.97438 * 3 2 1 6 6 C 1.36372 * 126.77096 * 359.97343 * 5 3 2 7 7 N 1.35474 * 109.77145 * 180.02562 * 6 5 3 8 8 C 1.46493 * 124.78618 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47400 * 265.02448 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.37963 * 110.42294 * 0.22966 * 7 6 5 19 19 C 1.39129 * 133.18475 * 180.41237 * 18 7 6 20 20 C 1.37764 * 119.93012 * 179.62106 * 19 18 7 21 21 C 1.38758 * 120.63344 * 359.76454 * 20 19 18 22 22 C 1.37752 * 120.29929 * 359.97438 * 21 20 19 23 23 C 1.39272 * 119.67424 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47579 * 300.01215 * 1 2 3 26 26 H 1.09010 * 109.46646 * 60.00360 * 1 2 3 27 27 H 0.96998 * 120.00296 * 179.97438 * 2 1 3 28 28 H 1.07996 * 125.11366 * 359.97438 * 6 5 3 29 29 H 1.09004 * 109.46794 * 145.02547 * 8 7 6 30 30 H 1.09000 * 109.47559 * 25.03023 * 8 7 6 31 31 H 1.09004 * 109.47066 * 60.00265 * 9 8 7 32 32 H 1.08994 * 109.47405 * 300.00096 * 9 8 7 33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.03441 * 359.38386 * 19 18 7 35 35 H 1.07999 * 119.68538 * 179.73324 * 20 19 18 36 36 H 1.07990 * 119.84724 * 179.97438 * 21 20 19 37 37 H 1.08007 * 120.16126 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5305 2.2209 -0.0005 5 6 3.6080 1.1672 0.0006 6 6 4.4243 0.0747 0.0016 7 7 5.7199 0.4708 0.0024 8 6 6.8708 -0.4355 0.0042 9 6 7.3477 -0.6515 1.4418 10 6 8.5321 -1.5833 1.4435 11 1 8.9075 -1.9813 0.5123 12 6 9.1405 -1.9229 2.6334 13 7 10.1775 -2.7317 2.6344 14 14 8.4916 -1.2340 4.2440 15 1 7.4620 -2.1510 4.7955 16 1 9.6094 -1.1047 5.2131 17 1 7.8877 0.1012 4.0038 18 6 5.8023 1.8479 0.0071 19 6 6.8718 2.7378 0.0024 20 6 6.6366 4.0952 0.0015 21 6 5.3395 4.5880 0.0004 22 6 4.2674 3.7230 -0.0004 23 6 4.4906 2.3483 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.9500 -0.8400 0.0004 28 1 4.0885 -0.9517 0.0026 29 1 7.6777 0.0009 -0.5846 30 1 6.5807 -1.3922 -0.4300 31 1 6.5408 -1.0879 2.0306 32 1 7.6379 0.3051 1.8760 33 1 10.6051 -2.9708 3.4715 34 1 7.8853 2.3648 0.0033 35 1 7.4698 4.7824 0.0022 36 1 5.1697 5.6545 0.0001 37 1 3.2587 4.1090 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436449130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:43 Heat of formation + Delta-G solvation = 14.610864 kcal Electronic energy + Delta-G solvation = -20089.323096 eV Core-core repulsion = 17024.679949 eV Total energy + Delta-G solvation = -3064.643148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31936 -39.01464 -36.97742 -34.48044 -34.14573 -32.43122 -30.68910 -29.15699 -29.10207 -26.74972 -25.05443 -22.79380 -22.11545 -21.56111 -20.40346 -19.64857 -17.71154 -16.98262 -16.55103 -15.54081 -15.41778 -15.22236 -15.16315 -14.71094 -14.09171 -14.03775 -13.70548 -13.18513 -13.13107 -12.90930 -12.71975 -12.60715 -12.25431 -12.01131 -11.51255 -11.36008 -11.20996 -10.76835 -10.45298 -10.31429 -10.02040 -9.79547 -9.52001 -9.36344 -9.12440 -8.75117 -8.04819 -7.44395 -6.25882 -4.28097 1.19031 1.77740 2.22969 3.01230 3.17664 3.26891 3.31321 3.32382 3.59121 4.18553 4.27322 4.74298 4.88859 4.92115 5.07110 5.12279 5.26196 5.38207 5.41131 5.47473 5.64150 5.68821 5.76614 5.82745 5.90758 5.93262 6.13128 6.27804 6.39668 6.63593 6.79099 6.84487 6.86705 6.88453 7.06360 7.35042 7.39924 7.54186 7.58776 8.24032 8.39605 8.74422 9.34593 10.86428 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.005410 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.025734 B = 5174.271151 C = 6234.680519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.741 5.741 3 C 0.595 3.405 4 O -0.550 6.550 5 C -0.255 4.255 6 C 0.122 3.878 7 N -0.454 5.454 8 C 0.110 3.890 9 C -0.024 4.024 10 C -0.531 4.531 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.894 5.894 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.090 3.910 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.399 0.601 28 H 0.172 0.828 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.400 6.499 -5.978 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.393 5.393 3 C 0.385 3.615 4 O -0.428 6.428 5 C -0.266 4.266 6 C -0.014 4.014 7 N -0.131 5.131 8 C -0.009 4.009 9 C -0.062 4.062 10 C -0.569 4.569 11 H 0.094 0.906 12 C -0.127 4.127 13 N -0.532 5.532 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.015 4.015 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.164 4.164 22 C -0.091 4.091 23 C -0.067 4.067 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.232 0.768 28 H 0.189 0.811 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.415 6.946 -5.871 16.207 hybrid contribution 0.089 -0.412 1.019 1.103 sum -13.325 6.534 -4.852 15.614 Atomic orbital electron populations 1.21462 0.79734 1.01863 1.02149 1.45636 1.07513 1.08591 1.77530 1.17268 0.85894 0.83290 0.75025 1.90732 1.69948 1.31217 1.50911 1.19783 0.91657 0.92465 1.22719 1.22077 0.83035 0.98754 0.97531 1.44380 1.06564 1.05021 1.57166 1.22243 0.85044 0.91804 1.01821 1.19937 0.97353 0.98128 0.90792 1.20840 1.12615 1.28068 0.95373 0.90584 1.24937 0.94390 0.94304 0.99101 1.69884 1.21259 1.34560 1.27473 0.86824 0.78881 0.80358 0.83596 1.20094 1.21002 1.18933 1.18293 0.95253 0.82936 1.05028 1.20168 0.97085 0.92152 1.04094 1.20775 0.96944 0.94045 1.01049 1.20899 0.92338 0.99217 1.03932 1.20571 0.99335 0.90825 0.98377 1.18701 0.90708 0.92770 1.04477 0.90892 0.92417 0.92423 0.76753 0.81052 0.89517 0.89247 0.96326 0.95688 0.92341 0.85713 0.85878 0.86214 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.70 59.84 0.64 1.47 16 2 N -0.74 -8.15 5.70 -68.34 -0.39 -8.54 16 3 C 0.60 9.11 7.80 -12.75 -0.10 9.01 16 4 O -0.55 -10.13 16.16 5.21 0.08 -10.04 16 5 C -0.26 -4.04 6.27 -103.31 -0.65 -4.69 16 6 C 0.12 1.73 10.75 -16.62 -0.18 1.55 16 7 N -0.45 -7.47 2.74 -114.23 -0.31 -7.79 16 8 C 0.11 1.91 5.89 -4.05 -0.02 1.89 16 9 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 10 C -0.53 -13.85 9.66 -34.44 -0.33 -14.19 16 11 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 12 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 14 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 18 C 0.09 1.55 6.79 -83.97 -0.57 0.98 16 19 C -0.11 -1.84 9.97 -39.42 -0.39 -2.23 16 20 C -0.11 -1.52 10.01 -39.56 -0.40 -1.92 16 21 C -0.14 -2.02 10.03 -39.57 -0.40 -2.42 16 22 C -0.07 -1.16 9.85 -39.37 -0.39 -1.55 16 23 C -0.06 -1.08 6.27 -104.95 -0.66 -1.74 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.40 3.26 7.71 -40.82 -0.31 2.95 16 28 H 0.17 1.71 7.38 -52.49 -0.39 1.32 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 31 H 0.02 0.41 7.58 -51.93 -0.39 0.01 16 32 H 0.02 0.57 7.19 -51.93 -0.37 0.20 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 2.03 7.45 -52.48 -0.39 1.63 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -32.82 319.06 -8.20 -41.01 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.83 Total: 2.16 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.66 Total: -12.49 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.07 Total: -41.66 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.82 -8.20 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436449130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.623 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds