Wall clock time and date at job start Mon Mar 30 2020 01:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 120.00238 * 2 1 4 4 O 1.21673 * 119.99390 * 359.97438 * 3 2 1 5 5 C 1.46907 * 120.00002 * 179.97438 * 3 2 1 6 6 C 1.36372 * 126.77096 * 359.97343 * 5 3 2 7 7 N 1.35474 * 109.77145 * 180.02562 * 6 5 3 8 8 C 1.46493 * 124.78618 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47400 * 265.02448 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.37963 * 110.42294 * 0.22966 * 7 6 5 19 19 C 1.39129 * 133.18475 * 180.41237 * 18 7 6 20 20 C 1.37764 * 119.93012 * 179.62106 * 19 18 7 21 21 C 1.38758 * 120.63344 * 359.76454 * 20 19 18 22 22 C 1.37752 * 120.29929 * 359.97438 * 21 20 19 23 23 C 1.39272 * 119.67424 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47579 * 300.01215 * 1 2 3 26 26 H 1.09010 * 109.46646 * 60.00360 * 1 2 3 27 27 H 0.96998 * 120.00296 * 179.97438 * 2 1 3 28 28 H 1.07996 * 125.11366 * 359.97438 * 6 5 3 29 29 H 1.09004 * 109.46794 * 145.02547 * 8 7 6 30 30 H 1.09000 * 109.47559 * 25.03023 * 8 7 6 31 31 H 1.09004 * 109.47066 * 60.00265 * 9 8 7 32 32 H 1.08994 * 109.47405 * 300.00096 * 9 8 7 33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.03441 * 359.38386 * 19 18 7 35 35 H 1.07999 * 119.68538 * 179.73324 * 20 19 18 36 36 H 1.07990 * 119.84724 * 179.97438 * 21 20 19 37 37 H 1.08007 * 120.16126 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5305 2.2209 -0.0005 5 6 3.6080 1.1672 0.0006 6 6 4.4243 0.0747 0.0016 7 7 5.7199 0.4708 0.0024 8 6 6.8708 -0.4355 0.0042 9 6 7.3477 -0.6515 1.4418 10 6 8.5321 -1.5833 1.4435 11 1 8.9075 -1.9813 0.5123 12 6 9.1405 -1.9229 2.6334 13 7 10.1775 -2.7317 2.6344 14 14 8.4916 -1.2340 4.2440 15 1 7.4620 -2.1510 4.7955 16 1 9.6094 -1.1047 5.2131 17 1 7.8877 0.1012 4.0038 18 6 5.8023 1.8479 0.0071 19 6 6.8718 2.7378 0.0024 20 6 6.6366 4.0952 0.0015 21 6 5.3395 4.5880 0.0004 22 6 4.2674 3.7230 -0.0004 23 6 4.4906 2.3483 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 1.9500 -0.8400 0.0004 28 1 4.0885 -0.9517 0.0026 29 1 7.6777 0.0009 -0.5846 30 1 6.5807 -1.3922 -0.4300 31 1 6.5408 -1.0879 2.0306 32 1 7.6379 0.3051 1.8760 33 1 10.6051 -2.9708 3.4715 34 1 7.8853 2.3648 0.0033 35 1 7.4698 4.7824 0.0022 36 1 5.1697 5.6545 0.0001 37 1 3.2587 4.1090 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436449130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:43 Heat of formation + Delta-G solvation = -5.912187 kcal Electronic energy + Delta-G solvation = -20090.213043 eV Core-core repulsion = 17024.679949 eV Total energy + Delta-G solvation = -3065.533094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50430 -40.14024 -38.16464 -35.84119 -35.48394 -34.12252 -32.11927 -30.48511 -30.24993 -27.87654 -26.47515 -23.93174 -23.55057 -22.86181 -21.73847 -20.77801 -19.22280 -18.56024 -17.67219 -16.76360 -16.61272 -16.55227 -16.19535 -16.17964 -15.51745 -15.36065 -15.00671 -14.67048 -14.53047 -14.31207 -13.82221 -13.68173 -13.55004 -13.02340 -12.98831 -12.87986 -12.55304 -12.11059 -12.03064 -11.84651 -11.82706 -11.51998 -10.99875 -10.83625 -10.60440 -10.08814 -9.22514 -8.64443 -8.35785 -6.40879 0.03813 0.60363 1.04852 1.29876 1.34757 1.43566 1.78868 2.28975 2.39440 2.43825 2.99950 3.00198 3.69137 3.69801 3.83560 4.12446 4.23095 4.29081 4.32937 4.42754 4.56074 4.61748 4.65324 4.67632 4.76449 4.80661 4.98790 5.11224 5.15810 5.19691 5.48583 5.50292 5.52020 5.63908 5.70226 5.81959 6.13169 6.22173 6.25448 6.64505 6.67213 7.24938 7.34097 8.79741 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.005410 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.025734 B = 5174.271151 C = 6234.680519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.724 5.724 3 C 0.591 3.409 4 O -0.591 6.591 5 C -0.274 4.274 6 C 0.134 3.866 7 N -0.462 5.462 8 C 0.124 3.876 9 C -0.018 4.018 10 C -0.528 4.528 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.940 5.940 14 Si 0.937 3.063 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.066 3.934 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.088 4.088 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.415 0.585 28 H 0.215 0.785 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.023 0.977 32 H 0.013 0.987 33 H 0.268 0.732 34 H 0.125 0.875 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.656 6.605 -5.797 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.376 5.376 3 C 0.381 3.619 4 O -0.473 6.473 5 C -0.284 4.284 6 C -0.001 4.001 7 N -0.140 5.140 8 C 0.004 3.996 9 C -0.056 4.056 10 C -0.567 4.567 11 H 0.069 0.931 12 C -0.178 4.178 13 N -0.580 5.580 14 Si 0.761 3.239 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.184 1.184 18 C -0.038 4.038 19 C -0.153 4.153 20 C -0.124 4.124 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.092 4.092 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.251 0.749 28 H 0.232 0.768 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.699 7.022 -5.700 17.258 hybrid contribution 0.470 -0.422 0.888 1.090 sum -14.229 6.600 -4.812 16.407 Atomic orbital electron populations 1.21658 0.78284 1.04257 1.01380 1.45547 1.08471 1.08010 1.75577 1.17336 0.85826 0.83869 0.74901 1.90704 1.70555 1.32885 1.53163 1.19964 0.92180 0.92666 1.23625 1.22690 0.81773 1.00269 0.95327 1.44298 1.06938 1.04627 1.58114 1.21947 0.85705 0.93089 0.98875 1.19790 0.95741 0.96185 0.93880 1.21160 1.13498 1.27796 0.94218 0.93133 1.25745 0.94696 0.94778 1.02628 1.70011 1.23038 1.36596 1.28396 0.85862 0.78429 0.79910 0.79660 1.18984 1.20966 1.18439 1.18572 0.95660 0.83538 1.06060 1.20411 0.96935 0.93091 1.04845 1.21150 0.97958 0.93792 0.99474 1.21257 0.91746 1.00535 1.02036 1.20712 0.99759 0.91022 0.99541 1.19083 0.91334 0.93758 1.05042 0.86884 0.93371 0.93073 0.74883 0.76832 0.89623 0.87070 0.95825 0.96908 0.92271 0.85713 0.82847 0.83205 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.70 127.77 1.37 2.75 16 2 N -0.72 -14.35 5.70 -488.36 -2.78 -17.13 16 3 C 0.59 17.58 7.80 86.51 0.67 18.25 16 4 O -0.59 -21.95 16.16 -4.26 -0.07 -22.02 16 5 C -0.27 -8.38 6.27 -19.02 -0.12 -8.50 16 6 C 0.13 3.49 10.75 83.70 0.90 4.39 16 7 N -0.46 -14.45 2.74 -515.30 -1.41 -15.86 16 8 C 0.12 4.09 5.89 86.38 0.51 4.60 16 9 C -0.02 -0.75 4.36 29.85 0.13 -0.62 16 10 C -0.53 -27.47 9.66 25.60 0.25 -27.22 16 11 H 0.05 2.82 7.99 -2.91 -0.02 2.80 16 12 C 0.02 1.10 5.47 84.66 0.46 1.57 16 13 N -0.94 -55.53 13.96 21.45 0.30 -55.23 16 14 Si 0.94 42.60 27.47 68.60 1.88 44.49 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 18 C 0.07 2.23 6.79 38.92 0.26 2.49 16 19 C -0.13 -4.13 9.97 22.37 0.22 -3.90 16 20 C -0.10 -2.74 10.01 22.28 0.22 -2.52 16 21 C -0.14 -3.61 10.03 22.28 0.22 -3.38 16 22 C -0.09 -2.92 9.85 22.40 0.22 -2.70 16 23 C -0.09 -3.01 6.27 -20.08 -0.13 -3.14 16 24 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.41 5.41 7.71 -92.71 -0.71 4.70 16 28 H 0.22 3.40 7.38 -2.91 -0.02 3.38 16 29 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 30 H 0.11 3.18 8.11 -2.39 -0.02 3.16 16 31 H 0.02 0.98 7.58 -2.38 -0.02 0.96 16 32 H 0.01 0.57 7.19 -2.39 -0.02 0.55 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.15 2.94 8.06 -2.92 -0.02 2.92 16 37 H 0.12 3.92 7.45 -2.91 -0.02 3.90 16 Total: -1.00 -72.34 319.06 3.43 -68.91 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.31 Total: 14.78 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.20 Total: -17.93 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.90 Total: -88.23 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.02 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -72.34 3.43 -68.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436449130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.997 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds