Wall clock time and date at job start Mon Mar 30 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.47204 * 109.47460 * 119.99663 * 2 1 3 5 5 N 2.60800 * 109.47186 * 119.99506 * 2 1 3 6 6 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 7 7 O 1.21283 * 120.00472 * 240.00297 * 6 2 1 8 8 N 1.34777 * 119.99538 * 59.99635 * 6 2 1 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 2 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 12 12 C 1.50706 * 109.46603 * 295.00080 * 11 9 8 13 13 H 1.08003 * 119.99914 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99843 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99830 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00138 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47412 * 89.99781 * 16 14 12 18 18 H 1.48503 * 109.47500 * 209.99996 * 16 14 12 19 19 H 1.48501 * 109.47204 * 329.99977 * 16 14 12 20 20 C 1.50703 * 109.47256 * 275.27951 * 9 8 6 21 21 C 1.38242 * 119.99836 * 319.72549 * 20 9 8 22 22 C 1.38233 * 119.99852 * 179.81099 * 21 20 9 23 23 C 1.38241 * 119.99823 * 0.39897 * 22 21 20 24 24 C 1.38227 * 120.00337 * 359.85584 * 23 22 21 25 25 C 1.38234 * 120.00383 * 140.00388 * 20 9 8 26 26 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 27 27 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 28 28 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 2 30 30 H 1.08998 * 109.47257 * 54.99513 * 11 9 8 31 31 H 1.08993 * 109.47436 * 175.00131 * 11 9 8 32 32 H 0.97004 * 120.00062 * 180.02562 * 15 14 12 33 33 H 1.07995 * 119.99996 * 0.02562 * 21 20 9 34 34 H 1.08000 * 119.99735 * 180.23209 * 22 21 20 35 35 H 1.08001 * 119.99396 * 179.83514 * 23 22 21 36 36 H 1.07998 * 120.00107 * 179.97438 * 24 23 22 37 37 H 1.08005 * 119.99831 * 359.97370 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3993 -1.2292 2.1295 6 6 2.0324 -0.7105 -1.2304 7 8 2.7296 -1.6966 -1.1191 8 7 1.7067 -0.2501 -2.4545 9 6 2.2000 -0.9372 -3.6506 10 1 2.2365 -2.0105 -3.4641 11 6 1.2606 -0.6553 -4.8248 12 6 -0.0899 -1.2626 -4.5445 13 1 -0.2608 -1.7966 -3.6215 14 6 -1.1073 -1.1365 -5.4666 15 7 -2.2859 -1.6661 -5.2218 16 14 -0.8119 -0.2123 -7.0627 17 1 -0.3250 -1.1576 -8.0993 18 1 -2.0817 0.4095 -7.5171 19 1 0.2058 0.8461 -6.8409 20 6 3.5827 -0.4379 -3.9825 21 6 3.8800 0.9066 -3.8597 22 6 5.1493 1.3640 -4.1603 23 6 6.1190 0.4783 -4.5918 24 6 5.8203 -0.8653 -4.7196 25 6 4.5520 -1.3233 -4.4152 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.1493 0.5388 -2.5436 30 1 1.1546 0.4217 -4.9549 31 1 1.6739 -1.0921 -5.7338 32 1 -3.0016 -1.5777 -5.8706 33 1 3.1215 1.5990 -3.5255 34 1 5.3826 2.4138 -4.0608 35 1 7.1099 0.8361 -4.8292 36 1 6.5777 -1.5572 -5.0571 37 1 4.3186 -2.3731 -4.5151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439672371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:20 Heat of formation + Delta-G solvation = 4.991742 kcal Electronic energy + Delta-G solvation = -20351.974147 eV Core-core repulsion = 17286.913882 eV Total energy + Delta-G solvation = -3065.060264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03417 -38.75941 -36.52278 -35.33690 -33.47929 -32.61652 -30.98593 -30.56734 -29.34333 -25.54404 -24.79814 -22.42611 -21.83262 -21.12577 -19.89255 -17.85083 -17.11727 -17.00881 -16.40055 -15.64142 -15.12333 -14.78603 -14.39824 -14.21659 -13.77469 -13.51860 -13.17804 -13.06423 -12.89006 -12.69839 -12.57566 -12.44197 -12.19982 -11.85885 -11.76144 -11.44265 -11.39210 -11.14899 -10.79121 -10.69928 -10.24821 -9.91495 -9.58003 -9.38697 -8.70945 -8.67148 -8.62876 -8.36922 -6.16966 -4.17362 1.61457 1.65421 2.64818 2.73264 2.95723 3.21658 3.30385 3.31936 3.59156 3.91158 4.09436 4.32809 4.87435 4.89969 4.99873 5.12840 5.13543 5.17542 5.23121 5.38262 5.60230 5.71311 5.75344 5.77596 5.96608 6.12697 6.16376 6.24671 6.35779 6.63585 6.69467 6.71881 6.86256 6.97479 7.22004 7.25711 7.57877 7.58689 7.88484 8.37077 8.50773 8.88340 9.43801 10.95472 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.007883 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.451402 B = 3551.080989 C = 5541.835541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.014 4.014 3 H 0.136 0.864 4 C 0.230 3.770 5 N -0.425 5.425 6 C 0.522 3.478 7 O -0.537 6.537 8 N -0.692 5.692 9 C 0.195 3.805 10 H 0.094 0.906 11 C -0.014 4.014 12 C -0.523 4.523 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.874 3.126 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.079 4.079 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.404 0.596 30 H 0.025 0.975 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 9.020 3.005 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 H 0.154 0.846 4 C -0.089 4.089 5 N -0.101 5.101 6 C 0.305 3.695 7 O -0.414 6.414 8 N -0.342 5.342 9 C 0.091 3.909 10 H 0.112 0.888 11 C -0.051 4.051 12 C -0.561 4.561 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.701 3.299 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.080 4.080 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.125 4.125 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.240 0.760 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.251 7.470 4.400 13.425 hybrid contribution -0.368 1.025 -1.427 1.795 sum 9.882 8.495 2.973 13.366 Atomic orbital electron populations 1.21812 0.89237 1.04817 1.04370 1.18906 0.99097 0.99896 0.85921 0.84628 1.28190 0.93317 0.93601 0.93813 1.81133 1.08285 1.08108 1.12525 1.19855 0.80646 0.84757 0.84285 1.90748 1.38061 1.25999 1.86550 1.45781 1.51868 1.31941 1.04568 1.20002 0.88358 0.97216 0.85310 0.88808 1.19881 0.95025 0.97666 0.92576 1.21005 0.93220 1.35564 1.06275 0.90468 1.24975 0.95016 0.95043 0.97964 1.69898 1.02697 1.44798 1.36024 0.86878 0.77769 0.80815 0.84409 1.20249 1.21358 1.18942 1.20557 0.96413 0.93710 0.97330 1.20932 0.96456 0.95208 1.00230 1.21063 0.93676 0.99232 1.00331 1.21034 0.99058 0.93724 1.01251 1.21073 0.96635 0.95668 1.00626 1.21055 0.92802 0.99766 0.98903 0.90806 0.89131 0.90781 0.76037 0.95693 0.95166 0.92586 0.86327 0.86597 0.86745 0.86488 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.04 37.16 0.34 -1.09 16 2 C -0.01 -0.15 3.10 -94.56 -0.29 -0.45 16 3 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.23 3.35 13.88 -20.76 -0.29 3.07 16 5 N -0.43 -7.26 18.54 42.15 0.78 -6.48 16 6 C 0.52 8.11 7.09 -10.99 -0.08 8.03 16 7 O -0.54 -10.75 15.69 5.55 0.09 -10.67 16 8 N -0.69 -10.52 3.93 -54.93 -0.22 -10.73 16 9 C 0.20 3.50 2.11 -69.08 -0.15 3.36 16 10 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 11 C -0.01 -0.29 3.56 -27.88 -0.10 -0.38 16 12 C -0.52 -13.03 9.39 -34.44 -0.32 -13.35 16 13 H 0.08 2.11 7.99 -52.48 -0.42 1.69 16 14 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -25.51 13.96 55.43 0.77 -24.73 16 16 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 20 C -0.08 -1.29 4.91 -104.62 -0.51 -1.80 16 21 C -0.11 -1.58 9.32 -39.58 -0.37 -1.94 16 22 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 23 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 25 C -0.11 -1.67 9.67 -39.58 -0.38 -2.06 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.83 7.56 -51.93 -0.39 0.44 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.40 5.16 8.02 -40.82 -0.33 4.84 16 30 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 31 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 33 H 0.12 1.48 7.73 -52.49 -0.41 1.08 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.84 8.04 -52.48 -0.42 1.42 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -32.62 326.50 -6.59 -39.21 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.82 Total: 4.26 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.45 Total: -10.96 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.34 Total: -41.94 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.62 -6.59 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439672371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.205 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds