Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46952 * 2 1 4 4 C 1.47206 * 109.47168 * 239.99777 * 2 1 3 5 5 N 2.60798 * 109.47035 * 239.99786 * 2 1 3 6 6 C 1.50699 * 109.47078 * 120.00035 * 2 1 3 7 7 O 1.21282 * 120.00041 * 120.00051 * 6 2 1 8 8 N 1.34779 * 120.00033 * 300.00110 * 6 2 1 9 9 C 1.46500 * 120.00165 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.46886 * 324.99885 * 9 8 6 11 11 C 1.52991 * 109.47049 * 204.99591 * 9 8 6 12 12 C 1.50700 * 109.47299 * 65.00272 * 11 9 8 13 13 H 1.08006 * 119.99485 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00655 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99621 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00562 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47314 * 89.99892 * 16 14 12 18 18 H 1.48498 * 109.47352 * 210.00206 * 16 14 12 19 19 H 1.48500 * 109.46976 * 329.99986 * 16 14 12 20 20 C 1.50707 * 109.46989 * 84.99792 * 9 8 6 21 21 C 1.38231 * 119.99956 * 39.72397 * 20 9 8 22 22 C 1.38234 * 119.99851 * 179.78647 * 21 20 9 23 23 C 1.38239 * 119.99682 * 0.44487 * 22 21 20 24 24 C 1.38232 * 120.00373 * 359.81379 * 23 22 21 25 25 C 1.38237 * 119.99527 * 220.00093 * 20 9 8 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47289 * 60.00255 * 1 2 3 29 29 H 0.96996 * 119.99850 * 359.97438 * 8 6 2 30 30 H 1.09005 * 109.47120 * 184.99967 * 11 9 8 31 31 H 1.08998 * 109.47902 * 305.00027 * 11 9 8 32 32 H 0.96998 * 119.99754 * 180.02562 * 15 14 12 33 33 H 1.08003 * 119.99950 * 0.02562 * 21 20 9 34 34 H 1.07996 * 120.00534 * 180.27839 * 22 21 20 35 35 H 1.08002 * 119.99843 * 179.83283 * 23 22 21 36 36 H 1.08002 * 120.00220 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.00499 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 2.7296 -1.6965 1.1192 8 7 1.7067 -0.2500 2.4546 9 6 2.1945 -0.9409 3.6508 10 1 2.2308 -2.0137 3.4613 11 6 1.2505 -0.6614 4.8218 12 6 -0.0993 -1.2668 4.5344 13 1 -0.2671 -1.7974 3.6088 14 6 -1.1201 -1.1432 5.4530 15 7 -0.9156 -0.4974 6.5803 16 14 -2.7934 -1.8930 5.0965 17 1 -2.8321 -3.2851 5.6121 18 1 -3.8485 -1.0885 5.7633 19 1 -3.0298 -1.9015 3.6304 20 6 3.5762 -0.4436 3.9897 21 6 3.8784 0.8991 3.8610 22 6 5.1445 1.3559 4.1760 23 6 6.1110 0.4684 4.6111 24 6 5.8104 -0.8752 4.7347 25 6 4.5430 -1.3313 4.4238 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.1493 0.5389 2.5436 30 1 1.6597 -1.1012 5.7314 31 1 1.1449 0.4153 4.9545 32 1 -1.6336 -0.4109 7.2267 33 1 3.1242 1.5919 3.5179 34 1 5.3794 2.4056 4.0798 35 1 7.1010 0.8248 4.8547 36 1 6.5654 -1.5684 5.0750 37 1 4.3080 -2.3809 4.5205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439672372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = 0.891811 kcal Electronic energy + Delta-G solvation = -20315.209633 eV Core-core repulsion = 17249.971582 eV Total energy + Delta-G solvation = -3065.238051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98251 -38.67529 -36.52261 -35.24954 -33.49335 -32.67226 -30.87695 -30.46100 -28.81698 -25.45570 -24.77727 -22.35801 -22.03419 -21.14825 -19.83589 -17.86477 -17.01383 -16.74369 -16.20291 -15.59687 -15.02400 -14.76007 -14.57753 -14.18049 -13.70437 -13.52478 -13.11464 -13.00274 -12.78505 -12.62999 -12.55075 -12.20690 -12.15141 -11.79615 -11.62909 -11.44327 -11.17531 -10.98766 -10.77978 -10.65968 -10.51967 -9.84783 -9.56562 -9.34366 -8.62671 -8.53839 -8.50604 -8.23572 -6.14383 -4.18384 1.73054 1.76353 2.64477 2.72186 2.95565 3.23795 3.31672 3.33324 3.61091 3.90860 4.19343 4.35053 4.84630 4.90036 5.01006 5.22577 5.23051 5.23449 5.33698 5.49040 5.55420 5.66016 5.86009 5.89441 6.04754 6.10491 6.30261 6.38191 6.51380 6.75481 6.80232 6.82091 7.04309 7.36128 7.42978 7.52811 7.58115 7.81885 7.93741 8.19390 8.53864 8.87689 9.47228 10.95997 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.007757 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.020818 B = 3608.885917 C = 5711.294820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 H 0.137 0.863 4 C 0.230 3.770 5 N -0.426 5.426 6 C 0.519 3.481 7 O -0.538 6.538 8 N -0.692 5.692 9 C 0.185 3.815 10 H 0.089 0.911 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.074 4.074 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.108 4.108 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.404 0.596 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 6.342 -5.915 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 H 0.154 0.846 4 C -0.089 4.089 5 N -0.101 5.101 6 C 0.302 3.698 7 O -0.415 6.415 8 N -0.341 5.341 9 C 0.081 3.919 10 H 0.107 0.893 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.075 4.075 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.239 0.761 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.974 4.877 -7.213 11.156 hybrid contribution -1.324 0.209 0.458 1.416 sum 5.650 5.086 -6.755 10.170 Atomic orbital electron populations 1.21816 0.89477 1.04597 1.04390 1.18917 0.98944 1.00028 0.86035 0.84570 1.28196 0.93326 0.93586 0.93796 1.81132 1.08248 1.08166 1.12549 1.19868 0.80782 0.84829 0.84339 1.90745 1.38100 1.26126 1.86568 1.45878 1.51802 1.31777 1.04622 1.20301 0.89120 0.96654 0.85819 0.89337 1.19399 0.92752 0.98024 0.91175 1.21126 0.95413 1.35382 1.04115 0.92275 1.24982 0.98909 0.95154 0.95007 1.69956 1.33054 1.41539 1.08388 0.86613 0.83744 0.79288 0.78480 1.20682 1.21268 1.19788 1.20529 0.96264 0.93675 0.97000 1.20907 0.96357 0.95227 1.00202 1.21049 0.93780 0.99138 1.00331 1.21010 0.99034 0.93714 1.01482 1.21052 0.96644 0.95663 1.00686 1.21027 0.92819 0.99678 0.99087 0.90954 0.89155 0.90779 0.76059 0.94668 0.95563 0.92820 0.86405 0.86676 0.86836 0.86605 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.04 37.16 0.34 -1.02 16 2 C -0.01 -0.16 3.10 -94.56 -0.29 -0.46 16 3 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.23 3.31 13.88 -20.76 -0.29 3.02 16 5 N -0.43 -7.18 18.54 42.15 0.78 -6.40 16 6 C 0.52 8.05 7.10 -10.99 -0.08 7.97 16 7 O -0.54 -10.78 15.69 5.56 0.09 -10.69 16 8 N -0.69 -10.67 3.91 -54.93 -0.21 -10.88 16 9 C 0.18 3.44 2.12 -69.08 -0.15 3.30 16 10 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 11 C 0.02 0.53 4.49 -27.89 -0.13 0.40 16 12 C -0.52 -12.87 8.84 -34.44 -0.30 -13.17 16 13 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 16 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.07 -1.27 4.91 -104.62 -0.51 -1.79 16 21 C -0.11 -1.67 9.33 -39.59 -0.37 -2.03 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.78 10.05 -39.58 -0.40 -2.17 16 25 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.77 7.56 -51.93 -0.39 0.38 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.40 5.30 8.02 -40.82 -0.33 4.98 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.12 1.60 7.71 -52.48 -0.40 1.20 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -31.89 330.07 -6.97 -38.86 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.86 Total: 3.80 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.46 Total: -10.97 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.30 Total: -40.98 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.89 -6.97 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439672372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.751 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds