Wall clock time and date at job start Mon Mar 30 2020 01:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46952 * 2 1 4 4 C 1.47206 * 109.47168 * 239.99777 * 2 1 3 5 5 N 2.60798 * 109.47035 * 239.99786 * 2 1 3 6 6 C 1.50699 * 109.47078 * 120.00035 * 2 1 3 7 7 O 1.21282 * 120.00041 * 120.00051 * 6 2 1 8 8 N 1.34779 * 120.00033 * 300.00110 * 6 2 1 9 9 C 1.46500 * 120.00165 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.46886 * 324.99885 * 9 8 6 11 11 C 1.52991 * 109.47049 * 204.99591 * 9 8 6 12 12 C 1.50700 * 109.47299 * 65.00272 * 11 9 8 13 13 H 1.08006 * 119.99485 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00655 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99621 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00562 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47314 * 89.99892 * 16 14 12 18 18 H 1.48498 * 109.47352 * 210.00206 * 16 14 12 19 19 H 1.48500 * 109.46976 * 329.99986 * 16 14 12 20 20 C 1.50707 * 109.46989 * 84.99792 * 9 8 6 21 21 C 1.38231 * 119.99956 * 39.72397 * 20 9 8 22 22 C 1.38234 * 119.99851 * 179.78647 * 21 20 9 23 23 C 1.38239 * 119.99682 * 0.44487 * 22 21 20 24 24 C 1.38232 * 120.00373 * 359.81379 * 23 22 21 25 25 C 1.38237 * 119.99527 * 220.00093 * 20 9 8 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 28 28 H 1.09001 * 109.47289 * 60.00255 * 1 2 3 29 29 H 0.96996 * 119.99850 * 359.97438 * 8 6 2 30 30 H 1.09005 * 109.47120 * 184.99967 * 11 9 8 31 31 H 1.08998 * 109.47902 * 305.00027 * 11 9 8 32 32 H 0.96998 * 119.99754 * 180.02562 * 15 14 12 33 33 H 1.08003 * 119.99950 * 0.02562 * 21 20 9 34 34 H 1.07996 * 120.00534 * 180.27839 * 22 21 20 35 35 H 1.08002 * 119.99843 * 179.83283 * 23 22 21 36 36 H 1.08002 * 120.00220 * 180.02562 * 24 23 22 37 37 H 1.07999 * 120.00499 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0323 -0.7104 1.2304 7 8 2.7296 -1.6965 1.1192 8 7 1.7067 -0.2500 2.4546 9 6 2.1945 -0.9409 3.6508 10 1 2.2308 -2.0137 3.4613 11 6 1.2505 -0.6614 4.8218 12 6 -0.0993 -1.2668 4.5344 13 1 -0.2671 -1.7974 3.6088 14 6 -1.1201 -1.1432 5.4530 15 7 -0.9156 -0.4974 6.5803 16 14 -2.7934 -1.8930 5.0965 17 1 -2.8321 -3.2851 5.6121 18 1 -3.8485 -1.0885 5.7633 19 1 -3.0298 -1.9015 3.6304 20 6 3.5762 -0.4436 3.9897 21 6 3.8784 0.8991 3.8610 22 6 5.1445 1.3559 4.1760 23 6 6.1110 0.4684 4.6111 24 6 5.8104 -0.8752 4.7347 25 6 4.5430 -1.3313 4.4238 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.1493 0.5389 2.5436 30 1 1.6597 -1.1012 5.7314 31 1 1.1449 0.4153 4.9545 32 1 -1.6336 -0.4109 7.2267 33 1 3.1242 1.5919 3.5179 34 1 5.3794 2.4056 4.0798 35 1 7.1010 0.8248 4.8547 36 1 6.5654 -1.5684 5.0750 37 1 4.3080 -2.3809 4.5205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439672372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:22 Heat of formation + Delta-G solvation = -18.102580 kcal Electronic energy + Delta-G solvation = -20316.033291 eV Core-core repulsion = 17249.971582 eV Total energy + Delta-G solvation = -3066.061709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27282 -39.86175 -37.73149 -36.72200 -34.83761 -34.28430 -32.10063 -31.61507 -30.45943 -26.83728 -25.98095 -23.75420 -23.40371 -22.42154 -21.17499 -19.11275 -18.44458 -18.12913 -17.56343 -16.90653 -16.45678 -16.21264 -15.87970 -15.37955 -14.95402 -14.81323 -14.38170 -14.18062 -14.12076 -14.01581 -13.74954 -13.60689 -13.36081 -13.18353 -12.88443 -12.71912 -12.61668 -12.40925 -12.34785 -12.09382 -11.82979 -11.53770 -11.25927 -10.86340 -10.51514 -9.98762 -9.71015 -9.48124 -8.14004 -6.23359 0.54800 0.60566 1.44478 1.47141 1.48108 1.56351 1.58835 1.75164 2.44233 2.45511 2.84157 3.02179 3.21313 3.80331 3.98005 4.04864 4.08609 4.21644 4.25974 4.36965 4.50653 4.70552 4.80386 4.83684 4.88286 4.89927 5.16994 5.24835 5.29608 5.34606 5.51223 5.64398 5.65665 5.68956 5.84896 5.93999 6.21253 6.26166 6.44364 6.69415 6.90218 7.31427 7.45917 8.96531 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.007757 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.020818 B = 3608.885917 C = 5711.294820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 H 0.190 0.810 4 C 0.247 3.753 5 N -0.475 5.475 6 C 0.518 3.482 7 O -0.589 6.589 8 N -0.682 5.682 9 C 0.201 3.799 10 H 0.057 0.943 11 C 0.037 3.963 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.013 3.987 15 N -0.926 5.926 16 Si 0.950 3.050 17 H -0.287 1.287 18 H -0.284 1.284 19 H -0.259 1.259 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.136 4.136 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.417 0.583 30 H 0.000 1.000 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 8.477 -6.765 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.207 0.793 4 C -0.072 4.072 5 N -0.151 5.151 6 C 0.303 3.697 7 O -0.469 6.469 8 N -0.332 5.332 9 C 0.096 3.904 10 H 0.075 0.925 11 C 0.000 4.000 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.566 5.566 16 Si 0.776 3.224 17 H -0.213 1.213 18 H -0.210 1.210 19 H -0.183 1.183 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.038 7.036 -8.079 12.818 hybrid contribution -1.272 -0.462 0.777 1.560 sum 5.767 6.574 -7.302 11.392 Atomic orbital electron populations 1.21890 0.87666 1.03928 1.06595 1.19119 1.00022 1.01324 0.81981 0.79336 1.28773 0.92056 0.92564 0.93771 1.81143 1.09906 1.09590 1.14423 1.20561 0.79690 0.84169 0.85242 1.90734 1.40414 1.28507 1.87278 1.45686 1.51796 1.31827 1.03918 1.19723 0.89688 0.95347 0.85622 0.92522 1.19146 0.92584 0.96915 0.91378 1.21419 0.96323 1.34681 1.03849 0.92304 1.25719 1.02343 0.95645 0.94864 1.70069 1.34080 1.43123 1.09366 0.85667 0.79775 0.77917 0.79000 1.21305 1.20967 1.18270 1.20463 0.95480 0.95060 0.99044 1.21151 0.97778 0.94400 1.00226 1.21473 0.92897 1.00920 0.98900 1.21464 1.00534 0.93060 0.99911 1.21355 0.96048 0.97013 1.00155 1.21172 0.94279 0.99430 1.00560 0.93093 0.87822 0.87709 0.74471 0.98163 0.96151 0.92884 0.84823 0.83347 0.83489 0.84428 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.04 71.98 0.65 -1.59 16 2 C 0.00 -0.01 3.10 -13.34 -0.04 -0.05 16 3 H 0.19 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.25 6.75 13.88 89.44 1.24 7.99 16 5 N -0.47 -15.80 18.54 20.01 0.37 -15.43 16 6 C 0.52 15.65 7.10 87.66 0.62 16.27 16 7 O -0.59 -24.02 15.69 -3.04 -0.05 -24.07 16 8 N -0.68 -20.62 3.91 -446.10 -1.75 -22.37 16 9 C 0.20 7.74 2.12 44.24 0.09 7.83 16 10 H 0.06 2.52 7.44 -2.39 -0.02 2.50 16 11 C 0.04 1.71 4.49 29.84 0.13 1.84 16 12 C -0.52 -26.21 8.84 25.60 0.23 -25.98 16 13 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 14 C 0.01 0.67 5.46 84.65 0.46 1.14 16 15 N -0.93 -51.51 13.29 21.45 0.28 -51.23 16 16 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 C -0.10 -3.49 4.91 -19.86 -0.10 -3.59 16 21 C -0.12 -3.43 9.33 22.27 0.21 -3.22 16 22 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 23 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 24 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 25 C -0.14 -4.67 9.67 22.27 0.22 -4.45 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.10 1.40 7.56 -2.39 -0.02 1.39 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.42 10.23 8.02 -92.71 -0.74 9.48 16 30 H 0.00 0.00 8.14 -2.38 -0.02 -0.01 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.13 3.33 7.71 -2.91 -0.02 3.31 16 34 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.11 3.80 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -72.20 330.07 5.61 -66.59 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.34 Total: 16.53 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.39 Total: -12.99 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -1.09 Total: -89.03 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -72.20 5.61 -66.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439672372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.485 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds