Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35748 * 116.99985 * 2 1 4 4 C 1.38990 * 119.90867 * 0.02562 * 3 2 1 5 5 C 1.37710 * 120.09727 * 179.76426 * 4 3 2 6 6 C 1.39782 * 119.90069 * 0.46689 * 5 4 3 7 7 C 1.43208 * 120.09013 * 179.79200 * 6 5 4 8 8 N 6.69642 * 117.00041 * 0.02562 * 2 1 3 9 9 C 1.39731 * 119.81594 * 359.51160 * 6 5 4 10 10 C 1.37761 * 119.90110 * 0.25346 * 9 6 5 11 11 C 1.50700 * 119.95127 * 180.02562 * 10 9 6 12 12 N 1.46499 * 109.47321 * 260.00373 * 11 10 9 13 13 C 1.36936 * 120.00021 * 89.99861 * 12 11 10 14 14 H 1.08004 * 119.99948 * 214.64703 * 13 12 11 15 15 C 1.38815 * 120.00373 * 34.64625 * 13 12 11 16 16 N 1.31625 * 119.99451 * 22.28814 * 15 13 12 17 17 Si 1.86799 * 120.00105 * 202.28980 * 15 13 12 18 18 H 1.48497 * 109.46895 * 59.99965 * 17 15 13 19 19 H 1.48506 * 109.46603 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46871 * 299.99749 * 17 15 13 21 21 C 1.46497 * 119.99831 * 270.00163 * 12 11 10 22 22 C 1.53004 * 117.49791 * 193.85006 * 21 12 11 23 23 C 1.52998 * 117.49980 * 125.22753 * 21 12 11 24 24 H 1.09006 * 109.46840 * 60.00242 * 1 2 3 25 25 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47269 * 300.00153 * 1 2 3 27 27 H 1.07999 * 119.94703 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.05054 * 180.25677 * 5 4 3 29 29 H 1.07998 * 120.05038 * 180.23000 * 9 6 5 30 30 H 1.09003 * 109.46938 * 20.00196 * 11 10 9 31 31 H 1.08993 * 109.47127 * 140.00234 * 11 10 9 32 32 H 0.97000 * 119.99428 * 174.49938 * 16 15 13 33 33 H 1.09003 * 115.55210 * 339.55551 * 21 12 11 34 34 H 1.09000 * 117.49779 * 359.97438 * 22 21 12 35 35 H 1.09002 * 117.49649 * 145.02348 * 22 21 12 36 36 H 1.09000 * 117.49816 * 214.97843 * 23 21 12 37 37 H 1.08999 * 117.50273 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2864 2.3740 0.0005 5 6 1.9076 3.6030 0.0054 6 6 3.3033 3.6784 0.0000 7 6 3.9535 4.9544 0.0006 8 7 4.4692 5.9665 0.0027 9 6 4.0625 2.5053 0.0000 10 6 3.4329 1.2799 0.0000 11 6 4.2506 0.0140 0.0005 12 7 4.3146 -0.5266 -1.3596 13 6 5.3256 -0.1456 -2.2009 14 1 5.1374 -0.0424 -3.2594 15 6 6.5926 0.1080 -1.6934 16 7 6.9565 -0.4141 -0.5412 17 14 7.7807 1.1902 -2.6455 18 1 7.1880 2.5402 -2.8218 19 1 9.0567 1.3044 -1.8943 20 1 8.0419 0.5864 -3.9768 21 6 3.2969 -1.4747 -1.8196 22 6 3.5831 -2.2481 -3.1084 23 6 2.5388 -1.1298 -3.1031 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.2081 2.3147 0.0014 28 1 1.3172 4.5073 0.0100 29 1 5.1411 2.5591 -0.0005 30 1 5.2588 0.2328 0.3523 31 1 3.7862 -0.7182 0.6610 32 1 7.8667 -0.3034 -0.2246 33 1 2.7466 -1.9919 -1.0336 34 1 4.5283 -2.0511 -3.6142 35 1 3.2211 -3.2744 -3.1704 36 1 1.4899 -1.4204 -3.1616 37 1 2.7969 -0.1973 -3.6050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446831884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = 69.491695 kcal Electronic energy + Delta-G solvation = -20993.471332 eV Core-core repulsion = 17931.207996 eV Total energy + Delta-G solvation = -3062.263337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98203 -37.56720 -36.96229 -35.77775 -33.73638 -31.77229 -30.23752 -29.67539 -27.29287 -25.72047 -23.69689 -22.74679 -21.42544 -21.32815 -19.80070 -17.96834 -17.75392 -16.30616 -16.04281 -15.52916 -15.36823 -14.35023 -14.23962 -13.90432 -13.77934 -13.62251 -13.47003 -13.05866 -12.73084 -12.38449 -12.11953 -11.96821 -11.64548 -11.60958 -11.16089 -10.91590 -10.81527 -10.74207 -10.58050 -10.47214 -10.09385 -10.02838 -9.62497 -9.28783 -8.55094 -8.46271 -7.77540 -6.54864 -5.89122 -3.39444 1.23040 1.69638 2.98611 3.28042 3.33222 3.39662 3.43523 3.54475 4.20712 4.29912 4.41698 4.96121 5.00130 5.09399 5.21125 5.26534 5.31366 5.36402 5.49540 5.56834 5.82968 5.97757 6.00189 6.15292 6.26473 6.31922 6.34435 6.50687 6.53794 6.66586 6.70678 6.94431 7.03117 7.11071 7.19506 7.57091 7.68427 7.78247 7.82410 8.43815 9.09901 9.73510 10.29041 11.12259 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.009899 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.379865 B = 2827.972599 C = 4590.770843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.165 3.835 4 C -0.221 4.221 5 C -0.047 4.047 6 C -0.083 4.083 7 C 0.271 3.729 8 N -0.447 5.447 9 C -0.017 4.017 10 C -0.104 4.104 11 C 0.182 3.818 12 N -0.539 5.539 13 C -0.256 4.256 14 H 0.063 0.937 15 C 0.016 3.984 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.280 1.280 21 C 0.142 3.858 22 C -0.202 4.202 23 C -0.224 4.224 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.925 0.425 2.582 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.118 3.882 4 C -0.240 4.240 5 C -0.068 4.068 6 C -0.087 4.087 7 C -0.043 4.043 8 N -0.123 5.123 9 C -0.038 4.038 10 C -0.107 4.107 11 C 0.056 3.944 12 N -0.254 5.254 13 C -0.385 4.385 14 H 0.081 0.919 15 C -0.185 4.185 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.206 1.206 21 C 0.033 3.967 22 C -0.241 4.241 23 C -0.265 4.265 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.840 1.824 2.738 12.289 hybrid contribution 0.093 0.401 -0.808 0.907 sum -11.747 2.226 1.930 12.111 Atomic orbital electron populations 1.23021 0.79394 1.03598 1.00878 1.86173 1.20330 1.26667 1.87505 1.19212 0.92140 0.83848 0.93006 1.21002 0.99724 0.91966 1.11315 1.20657 0.92048 0.97358 0.96766 1.15969 0.92676 0.86446 1.13595 1.25798 0.93049 0.92735 0.92698 1.81167 1.08571 1.11792 1.10774 1.20984 1.00124 0.89366 0.93365 1.20613 0.90802 0.98591 1.00735 1.20013 1.00136 0.87854 0.86446 1.43332 1.25601 1.44844 1.11601 1.18938 0.87836 1.40589 0.91146 0.91932 1.25078 0.96667 0.99551 0.97161 1.69837 1.17645 1.44044 1.21329 0.86532 0.80296 0.81435 0.79681 1.20642 1.21414 1.20600 1.21032 0.93680 0.93754 0.88223 1.23114 1.00497 0.94558 1.05917 1.23277 0.95114 0.99529 1.08609 0.92856 0.88597 0.93061 0.85371 0.85801 0.84687 0.87030 0.93778 0.93057 0.89052 0.88477 0.90944 0.91272 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.39 8.34 -18.95 -0.16 -4.55 16 3 C 0.17 2.64 6.67 -39.04 -0.26 2.38 16 4 C -0.22 -2.93 9.01 -39.50 -0.36 -3.28 16 5 C -0.05 -0.63 9.75 -39.20 -0.38 -1.02 16 6 C -0.08 -1.33 5.74 -106.83 -0.61 -1.94 16 7 C 0.27 4.63 15.33 -22.47 -0.34 4.28 16 8 N -0.45 -8.30 18.54 41.83 0.78 -7.52 16 9 C -0.02 -0.31 9.37 -39.20 -0.37 -0.67 16 10 C -0.10 -1.93 5.47 -104.53 -0.57 -2.51 16 11 C 0.18 3.91 5.13 -5.19 -0.03 3.89 16 12 N -0.54 -12.46 2.79 -167.02 -0.47 -12.93 16 13 C -0.26 -6.52 8.17 -15.06 -0.12 -6.64 16 14 H 0.06 1.64 7.09 -52.48 -0.37 1.27 16 15 C 0.02 0.41 4.96 -17.43 -0.09 0.32 16 16 N -0.89 -23.74 11.31 55.49 0.63 -23.11 16 17 Si 0.89 20.96 29.61 -169.99 -5.03 15.92 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.14 2.91 5.60 -67.93 -0.38 2.53 16 22 C -0.20 -3.94 9.79 -26.73 -0.26 -4.20 16 23 C -0.22 -4.18 10.08 -26.73 -0.27 -4.45 16 24 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 27 H 0.13 1.31 6.28 -52.49 -0.33 0.98 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.14 2.61 8.03 -52.49 -0.42 2.19 16 30 H 0.11 2.70 5.19 -51.93 -0.27 2.43 16 31 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 32 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 33 H 0.09 1.76 7.78 -51.93 -0.40 1.36 16 34 H 0.10 2.11 6.88 -51.93 -0.36 1.75 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.65 8.04 -51.93 -0.42 1.23 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -28.15 319.90 -7.08 -35.22 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.59 Total: 2.19 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.05 Total: -10.06 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.94 Total: -43.55 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.16 Total: -4.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.15 -7.08 -35.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446831884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.716 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds