Wall clock time and date at job start Mon Mar 30 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35748 * 116.99985 * 2 1 4 4 C 1.38990 * 119.90867 * 0.02562 * 3 2 1 5 5 C 1.37710 * 120.09727 * 179.76426 * 4 3 2 6 6 C 1.39782 * 119.90069 * 0.46689 * 5 4 3 7 7 C 1.43208 * 120.09013 * 179.79200 * 6 5 4 8 8 N 6.69642 * 117.00041 * 0.02562 * 2 1 3 9 9 C 1.39731 * 119.81594 * 359.51160 * 6 5 4 10 10 C 1.37761 * 119.90110 * 0.25346 * 9 6 5 11 11 C 1.50700 * 119.95127 * 180.02562 * 10 9 6 12 12 N 1.46499 * 109.47321 * 260.00373 * 11 10 9 13 13 C 1.36936 * 120.00021 * 89.99861 * 12 11 10 14 14 H 1.08004 * 119.99948 * 214.64703 * 13 12 11 15 15 C 1.38815 * 120.00373 * 34.64625 * 13 12 11 16 16 N 1.31625 * 119.99451 * 22.28814 * 15 13 12 17 17 Si 1.86799 * 120.00105 * 202.28980 * 15 13 12 18 18 H 1.48497 * 109.46895 * 59.99965 * 17 15 13 19 19 H 1.48506 * 109.46603 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46871 * 299.99749 * 17 15 13 21 21 C 1.46497 * 119.99831 * 270.00163 * 12 11 10 22 22 C 1.53004 * 117.49791 * 193.85006 * 21 12 11 23 23 C 1.52998 * 117.49980 * 125.22753 * 21 12 11 24 24 H 1.09006 * 109.46840 * 60.00242 * 1 2 3 25 25 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47269 * 300.00153 * 1 2 3 27 27 H 1.07999 * 119.94703 * 0.02562 * 4 3 2 28 28 H 1.07993 * 120.05054 * 180.25677 * 5 4 3 29 29 H 1.07998 * 120.05038 * 180.23000 * 9 6 5 30 30 H 1.09003 * 109.46938 * 20.00196 * 11 10 9 31 31 H 1.08993 * 109.47127 * 140.00234 * 11 10 9 32 32 H 0.97000 * 119.99428 * 174.49938 * 16 15 13 33 33 H 1.09003 * 115.55210 * 339.55551 * 21 12 11 34 34 H 1.09000 * 117.49779 * 359.97438 * 22 21 12 35 35 H 1.09002 * 117.49649 * 145.02348 * 22 21 12 36 36 H 1.09000 * 117.49816 * 214.97843 * 23 21 12 37 37 H 1.08999 * 117.50273 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2864 2.3740 0.0005 5 6 1.9076 3.6030 0.0054 6 6 3.3033 3.6784 0.0000 7 6 3.9535 4.9544 0.0006 8 7 4.4692 5.9665 0.0027 9 6 4.0625 2.5053 0.0000 10 6 3.4329 1.2799 0.0000 11 6 4.2506 0.0140 0.0005 12 7 4.3146 -0.5266 -1.3596 13 6 5.3256 -0.1456 -2.2009 14 1 5.1374 -0.0424 -3.2594 15 6 6.5926 0.1080 -1.6934 16 7 6.9565 -0.4141 -0.5412 17 14 7.7807 1.1902 -2.6455 18 1 7.1880 2.5402 -2.8218 19 1 9.0567 1.3044 -1.8943 20 1 8.0419 0.5864 -3.9768 21 6 3.2969 -1.4747 -1.8196 22 6 3.5831 -2.2481 -3.1084 23 6 2.5388 -1.1298 -3.1031 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.2081 2.3147 0.0014 28 1 1.3172 4.5073 0.0100 29 1 5.1411 2.5591 -0.0005 30 1 5.2588 0.2328 0.3523 31 1 3.7862 -0.7182 0.6610 32 1 7.8667 -0.3034 -0.2246 33 1 2.7466 -1.9919 -1.0336 34 1 4.5283 -2.0511 -3.6142 35 1 3.2211 -3.2744 -3.1704 36 1 1.4899 -1.4204 -3.1616 37 1 2.7969 -0.1973 -3.6050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446831884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:21 Heat of formation + Delta-G solvation = 55.211172 kcal Electronic energy + Delta-G solvation = -20994.090582 eV Core-core repulsion = 17931.207996 eV Total energy + Delta-G solvation = -3062.882586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17106 -38.76769 -38.57963 -37.12748 -35.39602 -33.41282 -31.51263 -31.21631 -28.16777 -27.44493 -25.32744 -24.00968 -22.86292 -22.71381 -21.52108 -19.35581 -18.83919 -18.00610 -17.38528 -17.05612 -16.53128 -16.10096 -15.57288 -15.41254 -15.03435 -14.94973 -14.69180 -14.63317 -14.16442 -13.77409 -13.55587 -13.25332 -13.01995 -12.96636 -12.74917 -12.65966 -12.46339 -12.23232 -12.10143 -11.83436 -11.75917 -11.58261 -11.28419 -10.85138 -10.37955 -9.80105 -8.99764 -8.39786 -7.82605 -5.36295 -0.02203 0.47966 1.40132 1.45785 1.49397 1.63173 1.97430 2.46791 2.53528 2.94164 3.00734 3.18463 3.56335 3.72039 3.93995 3.97597 4.28202 4.42884 4.46067 4.57385 4.59205 4.60900 4.71020 4.76080 4.84155 4.92503 5.02130 5.13664 5.15698 5.30888 5.36201 5.45687 5.55169 5.62096 5.65508 5.76128 5.94259 6.46443 6.50469 6.62713 7.18391 7.90963 8.40089 9.13733 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.009899 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.379865 B = 2827.972599 C = 4590.770843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.315 6.315 3 C 0.172 3.828 4 C -0.207 4.207 5 C -0.025 4.025 6 C -0.094 4.094 7 C 0.287 3.713 8 N -0.478 5.478 9 C -0.030 4.030 10 C -0.131 4.131 11 C 0.190 3.810 12 N -0.555 5.555 13 C -0.250 4.250 14 H 0.050 0.950 15 C -0.023 4.023 16 N -0.911 5.911 17 Si 0.935 3.065 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.277 1.277 21 C 0.125 3.875 22 C -0.205 4.205 23 C -0.199 4.199 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.172 0.828 28 H 0.162 0.838 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 0.647 2.334 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.227 6.227 3 C 0.124 3.876 4 C -0.226 4.226 5 C -0.045 4.045 6 C -0.098 4.098 7 C -0.027 4.027 8 N -0.155 5.155 9 C -0.052 4.052 10 C -0.134 4.134 11 C 0.064 3.936 12 N -0.270 5.270 13 C -0.380 4.380 14 H 0.068 0.932 15 C -0.221 4.221 16 N -0.555 5.555 17 Si 0.764 3.236 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.017 3.983 22 C -0.244 4.244 23 C -0.239 4.239 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.180 0.820 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.557 2.044 2.483 15.886 hybrid contribution 1.068 0.257 -0.708 1.307 sum -14.489 2.301 1.775 14.777 Atomic orbital electron populations 1.23404 0.76525 1.05499 1.02523 1.86150 1.23264 1.26257 1.87022 1.19203 0.91182 0.85437 0.91802 1.21396 1.01602 0.90419 1.09143 1.21095 0.90731 0.99132 0.93555 1.15961 0.93889 0.84895 1.15039 1.25937 0.92366 0.92596 0.91755 1.81175 1.09275 1.12931 1.12156 1.20761 0.99074 0.90554 0.94806 1.20209 0.92321 0.96974 1.03901 1.19708 0.98940 0.89333 0.85630 1.43472 1.25825 1.46129 1.11619 1.18953 0.88526 1.39551 0.90987 0.93197 1.25490 0.97813 1.00792 0.97960 1.69943 1.17462 1.45681 1.22456 0.85836 0.78877 0.79990 0.78859 1.21291 1.21749 1.20258 1.21211 0.93841 0.94109 0.89120 1.23120 0.99874 0.96414 1.05018 1.23185 0.96532 0.98109 1.06071 0.91522 0.86857 0.90891 0.81062 0.81997 0.87568 0.90378 0.93984 0.93645 0.87720 0.91407 0.88180 0.87807 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -8.39 8.34 -90.73 -0.76 -9.14 16 3 C 0.17 5.06 6.67 22.62 0.15 5.21 16 4 C -0.21 -4.52 9.01 22.33 0.20 -4.32 16 5 C -0.02 -0.56 9.75 22.52 0.22 -0.34 16 6 C -0.09 -2.89 5.74 -21.30 -0.12 -3.02 16 7 C 0.29 9.60 15.33 88.33 1.35 10.96 16 8 N -0.48 -17.64 18.54 19.01 0.35 -17.28 16 9 C -0.03 -1.12 9.37 22.52 0.21 -0.91 16 10 C -0.13 -4.89 5.47 -19.81 -0.11 -5.00 16 11 C 0.19 8.44 5.13 85.63 0.44 8.88 16 12 N -0.55 -26.08 2.79 -682.34 -1.90 -27.99 16 13 C -0.25 -13.14 8.17 84.03 0.69 -12.46 16 14 H 0.05 2.71 7.09 -2.91 -0.02 2.69 16 15 C -0.02 -1.23 4.96 84.86 0.42 -0.81 16 16 N -0.91 -51.09 11.31 21.65 0.24 -50.84 16 17 Si 0.94 44.68 29.61 68.60 2.03 46.71 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C 0.13 5.00 5.60 44.99 0.25 5.25 16 22 C -0.21 -7.78 9.79 30.60 0.30 -7.48 16 23 C -0.20 -6.95 10.08 30.59 0.31 -6.64 16 24 H 0.07 0.85 7.65 -2.38 -0.02 0.83 16 25 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 27 H 0.17 2.31 6.28 -2.91 -0.02 2.29 16 28 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.11 4.45 8.03 -2.91 -0.02 4.43 16 30 H 0.08 4.02 5.19 -2.39 -0.01 4.01 16 31 H 0.04 1.81 7.74 -2.39 -0.02 1.79 16 32 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 33 H 0.11 3.86 7.78 -2.39 -0.02 3.84 16 34 H 0.07 2.97 6.88 -2.39 -0.02 2.96 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 Total: -1.00 -63.89 319.90 6.48 -57.42 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.08 Total: 10.49 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.42 Total: -9.36 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -1.31 Total: -96.11 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.76 Total: -9.14 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.89 6.48 -57.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446831884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.627 kcal (2) G-P(sol) polarization free energy of solvation -63.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds