Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35887 * 117.00382 * 2 1 4 4 C 1.38312 * 120.26223 * 0.02562 * 3 2 1 5 5 C 1.38682 * 120.62545 * 180.02562 * 4 3 2 6 6 C 1.37922 * 120.72619 * 0.02562 * 5 4 3 7 7 C 1.39212 * 119.68247 * 0.02562 * 6 5 4 8 8 C 1.39927 * 120.27134 * 180.02562 * 3 2 1 9 9 C 1.46577 * 121.72521 * 0.02562 * 8 3 2 10 10 C 1.33987 * 119.90627 * 179.97438 * 9 8 3 11 11 N 1.36996 * 122.44064 * 359.71610 * 10 9 8 12 12 H 0.96998 * 119.12389 * 180.28561 * 11 10 9 13 13 C 1.37500 * 121.74868 * 0.58065 * 11 10 9 14 14 N 1.30904 * 120.53120 * 179.70471 * 13 11 10 15 15 C 1.46499 * 120.00057 * 353.89811 * 14 13 11 16 16 C 1.52998 * 109.47137 * 116.19449 * 15 14 13 17 17 C 1.50705 * 109.47290 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00002 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99978 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47042 * 89.99550 * 21 19 17 23 23 H 1.48494 * 109.47181 * 209.99983 * 21 19 17 24 24 H 1.48510 * 109.46838 * 329.99742 * 21 19 17 25 25 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47121 * 299.99855 * 1 2 3 27 27 H 1.09003 * 109.47122 * 59.99797 * 1 2 3 28 28 H 1.08002 * 119.68559 * 0.04545 * 4 3 2 29 29 H 1.08007 * 119.63720 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.15854 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.04865 * 0.02562 * 9 8 3 32 32 H 1.08000 * 118.77961 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.47451 * 236.19396 * 15 14 13 34 34 H 1.08999 * 109.47193 * 356.19723 * 15 14 13 35 35 H 1.09002 * 109.47712 * 300.00075 * 16 15 14 36 36 H 1.08996 * 109.47169 * 60.00479 * 16 15 14 37 37 H 0.97002 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2980 2.3742 0.0005 5 6 1.9199 3.6138 0.0000 6 6 3.2956 3.7120 -0.0016 7 6 4.0694 2.5548 -0.0032 8 6 3.4429 1.2905 -0.0005 9 6 4.2835 0.0897 -0.0017 10 6 5.6181 0.2085 -0.0027 11 7 6.2476 1.4252 -0.0084 12 1 7.2171 1.4552 -0.0131 13 6 5.5416 2.6051 -0.0017 14 7 6.1677 3.7547 -0.0016 15 6 7.6265 3.7943 0.1262 16 6 8.2345 4.3816 -1.1491 17 6 9.7352 4.4217 -1.0180 18 1 10.2081 4.0645 -0.1151 19 6 10.5045 4.9155 -2.0502 20 7 9.9287 5.3509 -3.1494 21 14 12.3648 4.9659 -1.8873 22 1 12.9408 3.6953 -2.3962 23 1 12.9002 6.1036 -2.6772 24 1 12.7320 5.1387 -0.4587 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2195 2.3168 0.0017 29 1 1.3202 4.5121 0.0000 30 1 3.7702 4.6821 -0.0024 31 1 3.8278 -0.8894 -0.0025 32 1 6.2199 -0.6883 -0.0031 33 1 7.8999 4.4160 0.9786 34 1 8.0056 2.7835 0.2772 35 1 7.9612 3.7599 -2.0017 36 1 7.8555 5.3923 -1.3002 37 1 10.4699 5.6980 -3.8757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450442316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = 1.967996 kcal Electronic energy + Delta-G solvation = -19738.098660 eV Core-core repulsion = 16672.907276 eV Total energy + Delta-G solvation = -3065.191384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60528 -40.08560 -37.82929 -36.61002 -35.05339 -32.88615 -32.47530 -30.68480 -29.45387 -28.11088 -26.83679 -24.56666 -24.28114 -22.74363 -21.61101 -19.86106 -18.91884 -18.71300 -18.17707 -17.18897 -16.82506 -16.61999 -16.55691 -15.73744 -15.61992 -15.38195 -14.82367 -14.56373 -14.29506 -14.06466 -13.74994 -13.50046 -13.29959 -12.99615 -12.82426 -12.68923 -12.34968 -12.27025 -12.06952 -11.89861 -11.75954 -11.42707 -11.08889 -10.65066 -10.40944 -10.28507 -9.19597 -8.26469 -8.08757 -6.39427 -0.14824 0.14231 1.30337 1.37672 1.40347 1.51825 1.92446 2.16574 2.30957 2.37728 3.04537 3.07595 3.28471 3.75102 3.93966 4.03704 4.15504 4.22651 4.31792 4.40937 4.50122 4.52565 4.64519 4.72286 4.80822 4.85090 4.94183 5.03659 5.13391 5.38298 5.39375 5.45554 5.52218 5.59493 5.71139 5.74110 6.03278 6.11759 6.38791 6.49476 6.76573 7.14717 7.31424 8.87414 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036712 B = 0.003542 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.513889 B = 7903.464469 C = 8341.493395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.115 3.885 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.111 4.111 7 C -0.058 4.058 8 C -0.049 4.049 9 C -0.219 4.219 10 C 0.114 3.886 11 N -0.664 5.664 12 H 0.414 0.586 13 C 0.395 3.605 14 N -0.608 5.608 15 C 0.073 3.927 16 C 0.044 3.956 17 C -0.547 4.547 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.260 1.260 25 H 0.120 0.880 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.191 0.809 33 H 0.067 0.933 34 H 0.037 0.963 35 H -0.020 1.020 36 H -0.014 1.014 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.874 -13.634 7.966 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.069 3.931 4 C -0.199 4.199 5 C -0.114 4.114 6 C -0.131 4.131 7 C -0.061 4.061 8 C -0.052 4.052 9 C -0.245 4.245 10 C -0.008 4.008 11 N -0.289 5.289 12 H 0.253 0.747 13 C 0.123 3.877 14 N -0.333 5.333 15 C -0.057 4.057 16 C 0.006 3.994 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.184 1.184 25 H 0.138 0.862 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.181 0.819 29 H 0.175 0.825 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.208 0.792 33 H 0.086 0.914 34 H 0.055 0.945 35 H -0.002 1.002 36 H 0.005 0.995 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.860 -12.788 7.761 24.863 hybrid contribution 1.744 -0.065 -0.333 1.777 sum -18.115 -12.852 7.427 23.420 Atomic orbital electron populations 1.23392 0.76292 1.05723 1.02393 1.86021 1.23356 1.25708 1.88585 1.18685 0.90446 0.85564 0.98356 1.21609 1.01606 0.91210 1.05499 1.21197 0.93161 0.98603 0.98399 1.21090 0.94384 0.97510 1.00128 1.18279 0.88109 0.94066 1.05653 1.18401 0.91460 0.92848 1.02527 1.21317 0.91506 0.97831 1.13815 1.21928 0.94958 0.88218 0.95679 1.42964 1.10908 1.04833 1.70176 0.74676 1.21097 0.92235 0.82329 0.92003 1.72919 1.10961 1.21845 1.27577 1.21812 0.86140 0.98631 0.99089 1.18856 0.94652 0.94244 0.91660 1.21601 0.92324 1.42256 1.02303 0.91471 1.26092 1.04774 0.94406 0.94663 1.70143 1.37826 1.42700 1.06708 0.85311 0.78098 0.78040 0.78749 1.19356 1.20718 1.18443 0.86191 0.91447 0.91663 0.81851 0.82500 0.85766 0.82052 0.79166 0.91437 0.94495 1.00190 0.99517 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.31 9.84 -92.28 -0.91 -7.22 16 3 C 0.12 2.74 6.70 22.70 0.15 2.89 16 4 C -0.18 -3.56 9.03 22.39 0.20 -3.36 16 5 C -0.10 -2.15 10.01 22.30 0.22 -1.93 16 6 C -0.11 -3.42 9.64 22.43 0.22 -3.21 16 7 C -0.06 -1.97 5.90 -19.96 -0.12 -2.09 16 8 C -0.05 -1.42 5.90 -19.99 -0.12 -1.54 16 9 C -0.22 -5.37 9.73 23.48 0.23 -5.15 16 10 C 0.11 2.72 11.08 82.92 0.92 3.64 16 11 N -0.66 -21.10 5.24 -187.93 -0.99 -22.09 16 12 H 0.41 13.04 6.20 -92.71 -0.57 12.46 16 13 C 0.40 15.14 7.66 136.18 1.04 16.18 16 14 N -0.61 -27.24 9.90 -339.51 -3.36 -30.60 16 15 C 0.07 3.44 6.23 86.38 0.54 3.98 16 16 C 0.04 2.53 5.30 29.85 0.16 2.69 16 17 C -0.55 -32.30 9.11 25.60 0.23 -32.06 16 18 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -59.19 13.29 21.45 0.28 -58.90 16 21 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 27 H 0.06 0.53 7.67 -2.39 -0.02 0.51 16 28 H 0.16 1.96 6.28 -2.91 -0.02 1.94 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.12 4.18 7.70 -2.91 -0.02 4.16 16 31 H 0.16 3.16 7.75 -2.91 -0.02 3.13 16 32 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.04 1.56 5.49 -2.39 -0.01 1.55 16 35 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -77.10 314.16 2.83 -74.27 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.52 Total: 15.85 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.25 Total: -18.30 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.06 Total: -111.59 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.91 Total: -7.22 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.10 2.83 -74.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450442316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.243 kcal (2) G-P(sol) polarization free energy of solvation -77.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds