Wall clock time and date at job start Mon Mar 30 2020 01:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47339 * 21.45648 * 3 2 1 5 5 C 1.46495 * 119.99870 * 269.99627 * 4 3 2 6 6 C 1.52997 * 109.47347 * 269.99910 * 5 4 3 7 7 C 1.34778 * 119.99997 * 89.99541 * 4 3 2 8 8 O 1.21581 * 120.00070 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99597 * 180.02562 * 7 4 3 10 10 C 1.39250 * 119.99806 * 184.27909 * 9 7 4 11 11 C 1.39484 * 119.83198 * 324.72499 * 10 9 7 12 12 C 1.36374 * 120.16631 * 180.25775 * 11 10 9 13 13 C 1.40873 * 119.82811 * 359.49229 * 12 11 10 14 14 C 1.41158 * 120.16305 * 180.23629 * 13 12 11 15 15 H 1.07999 * 119.99531 * 215.05030 * 14 13 12 16 16 C 1.39889 * 120.00188 * 35.04644 * 14 13 12 17 17 N 1.30881 * 119.99737 * 355.52233 * 16 14 13 18 18 Si 1.86796 * 120.00062 * 175.51858 * 16 14 13 19 19 H 1.48499 * 109.47121 * 90.00484 * 18 16 14 20 20 H 1.48501 * 109.46904 * 210.00110 * 18 16 14 21 21 H 1.48499 * 109.47218 * 330.00359 * 18 16 14 22 22 C 1.40869 * 119.66853 * 0.52231 * 13 12 11 23 23 C 1.36372 * 119.83470 * 359.73398 * 22 13 12 24 24 H 4.40644 * 5.51452 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47623 * 261.45462 * 3 2 1 26 26 H 1.09005 * 109.46967 * 141.45164 * 3 2 1 27 27 H 1.09011 * 109.47159 * 29.99982 * 5 4 3 28 28 H 1.08994 * 109.47206 * 149.99734 * 5 4 3 29 29 H 1.08998 * 109.47206 * 300.00365 * 6 5 4 30 30 H 1.09004 * 109.46852 * 60.00303 * 6 5 4 31 31 H 1.09002 * 109.47195 * 179.97438 * 6 5 4 32 32 H 0.97001 * 120.00565 * 4.28017 * 9 7 4 33 33 H 1.08002 * 119.91527 * 359.96989 * 11 10 9 34 34 H 1.07998 * 120.08452 * 179.74629 * 12 11 10 35 35 H 0.97006 * 119.99594 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07961 * 179.71162 * 22 13 12 37 37 H 1.07991 * 119.91905 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2846 -0.5053 5 6 3.3797 -2.3913 0.4229 6 6 4.8246 -2.3284 0.9219 7 6 3.3596 -1.4489 -1.8240 8 8 3.1569 -0.5303 -2.5943 9 7 3.8089 -2.6315 -2.2888 10 6 4.1258 -2.7746 -3.6371 11 6 3.3763 -2.1008 -4.6014 12 6 3.6774 -2.2401 -5.9241 13 6 4.7553 -3.0587 -6.3149 14 6 5.0763 -3.2041 -7.6818 15 1 5.4437 -4.1496 -8.0526 16 6 4.9185 -2.1235 -8.5561 17 7 4.3914 -1.0054 -8.1261 18 14 5.4603 -2.2764 -10.3373 19 1 4.3304 -2.7837 -11.1565 20 1 5.8796 -0.9447 -10.8431 21 1 6.6014 -3.2223 -10.4281 22 6 5.5073 -3.7362 -5.3352 23 6 5.1910 -3.5912 -4.0166 24 1 -1.0498 -0.0004 0.0000 25 1 3.0093 0.1535 1.0162 26 1 3.0089 0.8046 -0.6405 27 1 2.6988 -2.3120 1.2705 28 1 3.2131 -3.3388 -0.0894 29 1 5.5054 -2.4077 0.0744 30 1 4.9911 -1.3808 1.4343 31 1 5.0066 -3.1516 1.6129 32 1 3.9115 -3.3830 -1.6841 33 1 2.5525 -1.4708 -4.3000 34 1 3.0937 -1.7211 -6.6699 35 1 4.2823 -0.2560 -8.7323 36 1 6.3321 -4.3692 -5.6277 37 1 5.7663 -4.1103 -3.2645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490761762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:35 Heat of formation + Delta-G solvation = 58.110262 kcal Electronic energy + Delta-G solvation = -20043.986521 eV Core-core repulsion = 16981.229649 eV Total energy + Delta-G solvation = -3062.756872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20012 -37.64663 -35.97357 -34.56673 -33.40171 -32.55965 -30.54588 -29.44702 -28.98347 -26.94210 -24.66493 -23.38762 -21.34739 -20.96911 -19.40674 -18.41694 -17.70986 -17.22645 -16.66427 -15.58255 -15.30535 -14.83913 -14.19750 -13.99379 -13.94521 -13.74786 -13.29195 -12.96504 -12.66352 -12.56222 -12.09426 -12.02034 -11.68018 -11.46737 -11.27425 -11.12897 -10.88160 -10.59889 -10.43440 -10.15785 -9.91901 -9.82295 -9.52680 -9.01757 -8.77790 -8.68759 -7.45652 -6.80768 -6.53215 -4.27081 2.36616 2.76891 2.85112 3.10330 3.14259 3.15745 3.21874 3.32749 3.70017 4.03552 4.28907 4.40754 4.75675 4.78801 5.02409 5.14024 5.27438 5.55876 5.58621 5.65226 5.71939 5.92489 6.03325 6.17987 6.42092 6.47274 6.84806 6.90466 7.10716 7.18915 7.33503 7.39870 7.61185 7.71259 7.84597 8.07940 8.15644 8.34725 8.46908 8.73990 8.98319 8.99844 9.13971 10.37945 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.004116 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.912537 B = 6800.366933 C = 7488.305543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.198 4.198 3 C 0.241 3.759 4 N -0.632 5.632 5 C 0.107 3.893 6 C -0.174 4.174 7 C 0.698 3.302 8 O -0.568 6.568 9 N -0.666 5.666 10 C 0.023 3.977 11 C -0.094 4.094 12 C -0.143 4.143 13 C 0.099 3.901 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.809 5.809 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.203 4.203 23 C -0.116 4.116 24 H 0.215 0.785 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.390 0.610 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.277 0.723 36 H 0.096 0.904 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -1.458 16.015 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C 0.118 3.882 4 N -0.370 5.370 5 C -0.016 4.016 6 C -0.232 4.232 7 C 0.400 3.600 8 O -0.444 6.444 9 N -0.313 5.313 10 C -0.069 4.069 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.096 3.904 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.436 5.436 18 Si 0.739 3.261 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.223 4.223 23 C -0.136 4.136 24 H 0.232 0.768 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.719 -0.539 15.356 15.604 hybrid contribution 0.149 -0.343 -0.371 0.527 sum -2.569 -0.882 14.986 15.230 Atomic orbital electron populations 1.24904 0.95934 0.99374 1.01402 1.23788 0.95196 1.01009 0.99953 1.18095 0.83165 0.86602 1.00314 1.47201 1.70665 1.13551 1.05595 1.21475 0.96922 0.89722 0.93524 1.22247 0.96767 1.02329 1.01870 1.15969 0.78947 0.83591 0.81501 1.90940 1.57680 1.41150 1.54582 1.42255 1.68749 1.10848 1.09443 1.17115 1.01051 1.08300 0.80452 1.20678 0.98923 0.99008 0.92776 1.21305 0.98372 1.02507 0.94077 1.17714 0.89402 0.90253 0.93010 1.19457 1.39228 0.98108 0.92794 0.90722 1.25874 0.93332 0.94851 1.00520 1.69802 1.34158 1.03078 1.36571 0.86222 0.79690 0.78366 0.81804 1.19582 1.20347 1.18802 1.20666 1.02044 1.07654 0.91945 1.20033 0.95966 1.01592 0.96047 0.76812 0.88485 0.87384 0.90331 0.90829 0.91905 0.92175 0.91511 0.77452 0.87398 0.85262 0.91150 0.88575 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 19.25 29.55 0.57 -1.83 16 2 C -0.20 -2.65 13.68 -37.12 -0.51 -3.16 16 3 C 0.24 2.99 5.88 -6.83 -0.04 2.95 16 4 N -0.63 -8.73 2.43 -182.78 -0.44 -9.17 16 5 C 0.11 1.03 5.93 -4.05 -0.02 1.01 16 6 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 7 C 0.70 13.20 8.11 -86.92 -0.70 12.50 16 8 O -0.57 -13.38 13.34 5.29 0.07 -13.31 16 9 N -0.67 -12.27 5.18 -14.10 -0.07 -12.34 16 10 C 0.02 0.53 6.31 -83.56 -0.53 0.01 16 11 C -0.09 -2.42 8.61 -39.79 -0.34 -2.76 16 12 C -0.14 -3.93 8.61 -39.26 -0.34 -4.26 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.63 9.02 -37.86 -0.34 -12.97 16 15 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 16 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 17 N -0.81 -22.08 10.61 55.54 0.59 -21.49 16 18 Si 0.91 19.46 29.56 -169.99 -5.03 14.44 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.20 -4.98 9.74 -39.26 -0.38 -5.36 16 23 C -0.12 -2.57 9.90 -39.79 -0.39 -2.97 16 24 H 0.22 1.83 7.80 -54.10 -0.42 1.41 16 25 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.11 1.50 7.42 -51.93 -0.39 1.12 16 27 H 0.08 0.62 8.07 -51.92 -0.42 0.20 16 28 H 0.07 0.68 6.30 -51.93 -0.33 0.36 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.39 5.70 6.51 -40.82 -0.27 5.44 16 33 H 0.11 2.85 6.22 -52.49 -0.33 2.52 16 34 H 0.13 3.73 6.15 -52.49 -0.32 3.41 16 35 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -32.72 321.92 -7.92 -40.64 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.55 Total: 10.51 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -3.34 Total: -14.12 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.07 Total: -43.00 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.72 -7.92 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490761762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.745 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds