Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47339 * 21.45648 * 3 2 1 5 5 C 1.46495 * 119.99870 * 269.99627 * 4 3 2 6 6 C 1.52997 * 109.47347 * 269.99910 * 5 4 3 7 7 C 1.34778 * 119.99997 * 89.99541 * 4 3 2 8 8 O 1.21581 * 120.00070 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99597 * 180.02562 * 7 4 3 10 10 C 1.39250 * 119.99806 * 184.27909 * 9 7 4 11 11 C 1.39484 * 119.83198 * 324.72499 * 10 9 7 12 12 C 1.36374 * 120.16631 * 180.25775 * 11 10 9 13 13 C 1.40873 * 119.82811 * 359.49229 * 12 11 10 14 14 C 1.41158 * 120.16305 * 180.23629 * 13 12 11 15 15 H 1.07999 * 119.99531 * 215.05030 * 14 13 12 16 16 C 1.39889 * 120.00188 * 35.04644 * 14 13 12 17 17 N 1.30881 * 119.99737 * 355.52233 * 16 14 13 18 18 Si 1.86796 * 120.00062 * 175.51858 * 16 14 13 19 19 H 1.48499 * 109.47121 * 90.00484 * 18 16 14 20 20 H 1.48501 * 109.46904 * 210.00110 * 18 16 14 21 21 H 1.48499 * 109.47218 * 330.00359 * 18 16 14 22 22 C 1.40869 * 119.66853 * 0.52231 * 13 12 11 23 23 C 1.36372 * 119.83470 * 359.73398 * 22 13 12 24 24 H 4.40644 * 5.51452 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47623 * 261.45462 * 3 2 1 26 26 H 1.09005 * 109.46967 * 141.45164 * 3 2 1 27 27 H 1.09011 * 109.47159 * 29.99982 * 5 4 3 28 28 H 1.08994 * 109.47206 * 149.99734 * 5 4 3 29 29 H 1.08998 * 109.47206 * 300.00365 * 6 5 4 30 30 H 1.09004 * 109.46852 * 60.00303 * 6 5 4 31 31 H 1.09002 * 109.47195 * 179.97438 * 6 5 4 32 32 H 0.97001 * 120.00565 * 4.28017 * 9 7 4 33 33 H 1.08002 * 119.91527 * 359.96989 * 11 10 9 34 34 H 1.07998 * 120.08452 * 179.74629 * 12 11 10 35 35 H 0.97006 * 119.99594 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07961 * 179.71162 * 22 13 12 37 37 H 1.07991 * 119.91905 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2846 -0.5053 5 6 3.3797 -2.3913 0.4229 6 6 4.8246 -2.3284 0.9219 7 6 3.3596 -1.4489 -1.8240 8 8 3.1569 -0.5303 -2.5943 9 7 3.8089 -2.6315 -2.2888 10 6 4.1258 -2.7746 -3.6371 11 6 3.3763 -2.1008 -4.6014 12 6 3.6774 -2.2401 -5.9241 13 6 4.7553 -3.0587 -6.3149 14 6 5.0763 -3.2041 -7.6818 15 1 5.4437 -4.1496 -8.0526 16 6 4.9185 -2.1235 -8.5561 17 7 4.3914 -1.0054 -8.1261 18 14 5.4603 -2.2764 -10.3373 19 1 4.3304 -2.7837 -11.1565 20 1 5.8796 -0.9447 -10.8431 21 1 6.6014 -3.2223 -10.4281 22 6 5.5073 -3.7362 -5.3352 23 6 5.1910 -3.5912 -4.0166 24 1 -1.0498 -0.0004 0.0000 25 1 3.0093 0.1535 1.0162 26 1 3.0089 0.8046 -0.6405 27 1 2.6988 -2.3120 1.2705 28 1 3.2131 -3.3388 -0.0894 29 1 5.5054 -2.4077 0.0744 30 1 4.9911 -1.3808 1.4343 31 1 5.0066 -3.1516 1.6129 32 1 3.9115 -3.3830 -1.6841 33 1 2.5525 -1.4708 -4.3000 34 1 3.0937 -1.7211 -6.6699 35 1 4.2823 -0.2560 -8.7323 36 1 6.3321 -4.3692 -5.6277 37 1 5.7663 -4.1103 -3.2645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490761762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 38.903515 kcal Electronic energy + Delta-G solvation = -20044.819389 eV Core-core repulsion = 16981.229649 eV Total energy + Delta-G solvation = -3063.589740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65702 -39.39983 -37.31375 -36.26318 -34.88189 -33.94056 -31.51778 -31.34083 -30.80997 -28.20671 -26.40463 -24.38048 -23.19490 -22.73288 -20.88676 -19.71901 -19.19697 -18.77719 -18.10319 -17.09886 -16.89485 -16.25066 -15.73170 -15.51960 -15.22970 -14.87606 -14.61548 -14.45171 -14.12106 -13.94610 -13.66348 -13.48156 -13.28779 -12.86518 -12.80924 -12.63266 -12.31765 -12.07084 -11.80286 -11.68907 -11.57176 -11.23784 -11.12266 -10.87074 -10.53983 -9.92686 -9.43209 -8.69663 -8.47345 -6.30628 0.85841 1.15043 1.30239 1.39611 1.49166 1.55665 1.87270 2.08871 2.23244 2.27193 2.84469 3.05456 3.51887 3.71370 4.00484 4.23437 4.34155 4.44942 4.49530 4.53655 4.60244 4.89050 4.93494 5.01732 5.05379 5.11719 5.17417 5.33965 5.37945 5.42911 5.53760 5.69278 5.79150 6.04640 6.13739 6.17556 6.38458 6.65154 6.73338 6.98004 6.99446 7.05126 7.61136 8.45843 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.004116 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.912537 B = 6800.366933 C = 7488.305543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.237 3.763 4 N -0.620 5.620 5 C 0.100 3.900 6 C -0.168 4.168 7 C 0.692 3.308 8 O -0.622 6.622 9 N -0.656 5.656 10 C 0.039 3.961 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.081 0.919 16 C 0.022 3.978 17 N -0.850 5.850 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.206 4.206 23 C -0.107 4.107 24 H 0.244 0.756 25 H 0.141 0.859 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.281 0.719 36 H 0.115 0.885 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -2.907 18.183 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.238 4.238 3 C 0.115 3.885 4 N -0.357 5.357 5 C -0.022 4.022 6 C -0.226 4.226 7 C 0.394 3.606 8 O -0.502 6.502 9 N -0.305 5.305 10 C -0.056 4.056 11 C -0.130 4.130 12 C -0.187 4.187 13 C 0.063 3.937 14 C -0.529 4.529 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.478 5.478 18 Si 0.812 3.188 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.226 4.226 23 C -0.128 4.128 24 H 0.260 0.740 25 H 0.158 0.842 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.251 0.749 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.961 -2.030 17.624 17.848 hybrid contribution -0.176 0.116 -0.798 0.825 sum -2.137 -1.914 16.826 17.069 Atomic orbital electron populations 1.25746 0.96925 0.97856 1.00182 1.24170 0.96006 1.02413 1.01188 1.18307 0.83104 0.85179 1.01890 1.47245 1.69105 1.15196 1.04121 1.21834 0.98607 0.88276 0.93449 1.22204 0.94981 1.03839 1.01580 1.16231 0.78514 0.82863 0.82957 1.90913 1.59785 1.42838 1.56706 1.42017 1.68611 1.11861 1.08042 1.17162 0.99973 1.06480 0.81937 1.20648 0.99422 0.99845 0.93035 1.21156 0.99306 1.03890 0.94360 1.18048 0.90043 0.91382 0.94257 1.19767 1.40677 0.98907 0.93511 0.90131 1.26852 0.92823 0.94040 1.05183 1.69934 1.35498 1.04015 1.38339 0.85070 0.79525 0.78557 0.75675 1.18723 1.19844 1.17784 1.20949 1.02045 1.07107 0.92508 1.20392 0.95400 1.00726 0.96255 0.73960 0.84162 0.89748 0.87616 0.90266 0.93951 0.91612 0.88826 0.74850 0.89011 0.87944 0.90851 0.86716 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.28 19.25 74.32 1.43 -2.85 16 2 C -0.24 -6.06 13.68 31.13 0.43 -5.64 16 3 C 0.24 5.59 5.88 84.57 0.50 6.09 16 4 N -0.62 -16.11 2.43 -850.45 -2.07 -18.18 16 5 C 0.10 1.59 5.93 86.38 0.51 2.10 16 6 C -0.17 -2.22 10.24 71.98 0.74 -1.48 16 7 C 0.69 25.98 8.11 179.05 1.45 27.43 16 8 O -0.62 -30.36 13.34 -3.97 -0.05 -30.41 16 9 N -0.66 -23.29 5.18 -316.78 -1.64 -24.93 16 10 C 0.04 1.74 6.31 38.56 0.24 1.99 16 11 C -0.11 -5.86 8.61 22.14 0.19 -5.67 16 12 C -0.17 -9.71 8.61 22.48 0.19 -9.51 16 13 C 0.07 3.66 5.55 -21.27 -0.12 3.55 16 14 C -0.50 -27.80 9.02 23.39 0.21 -27.58 16 15 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 16 C 0.02 1.18 5.42 85.23 0.46 1.64 16 17 N -0.85 -48.60 10.61 21.82 0.23 -48.36 16 18 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.21 -9.99 9.74 22.48 0.22 -9.77 16 23 C -0.11 -4.56 9.90 22.13 0.22 -4.34 16 24 H 0.24 3.57 7.80 -4.43 -0.03 3.53 16 25 H 0.14 2.00 8.07 -2.39 -0.02 1.98 16 26 H 0.08 2.40 7.42 -2.38 -0.02 2.38 16 27 H 0.11 1.19 8.07 -2.38 -0.02 1.18 16 28 H 0.08 1.18 6.30 -2.39 -0.02 1.17 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.41 10.88 6.51 -92.71 -0.60 10.28 16 33 H 0.09 5.16 6.22 -2.91 -0.02 5.14 16 34 H 0.10 6.39 6.15 -2.91 -0.02 6.38 16 35 H 0.28 14.76 8.30 -92.70 -0.77 13.99 16 36 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 37 H 0.14 4.49 8.06 -2.92 -0.02 4.47 16 Total: -1.00 -75.97 321.92 5.65 -70.32 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.48 Total: 33.08 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 6.67 Total: -24.06 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -3.48 Total: -91.48 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.05 Total: -30.41 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -75.97 5.65 -70.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490761762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.220 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds