Wall clock time and date at job start Mon Mar 30 2020 01:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47136 * 136.83285 * 3 2 1 5 5 C 1.37109 * 119.99877 * 263.92452 * 4 3 2 6 6 H 1.08000 * 120.00142 * 199.75398 * 5 4 3 7 7 C 1.38943 * 119.99774 * 19.75328 * 5 4 3 8 8 N 1.31417 * 120.00164 * 21.74992 * 7 5 4 9 9 Si 1.86807 * 120.00081 * 201.74732 * 7 5 4 10 10 H 1.48497 * 109.46748 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46830 * 120.00154 * 9 7 5 12 12 H 1.48504 * 109.46947 * 240.00176 * 9 7 5 13 13 C 1.34772 * 120.00439 * 83.92437 * 4 3 2 14 14 O 1.21292 * 120.00311 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99663 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46690 * 180.02562 * 15 13 4 17 17 H 1.08999 * 109.47039 * 304.99734 * 16 15 13 18 18 C 1.52991 * 109.47572 * 65.00175 * 16 15 13 19 19 C 1.50699 * 109.46690 * 185.00521 * 16 15 13 20 20 C 1.38671 * 120.42240 * 119.72043 * 19 16 15 21 21 C 1.38626 * 118.42594 * 180.27192 * 20 19 16 22 22 C 1.38235 * 119.15981 * 0.02562 * 21 20 19 23 23 N 1.31859 * 120.75966 * 359.97438 * 22 21 20 24 24 C 1.31885 * 121.72635 * 0.02562 * 23 22 21 25 25 H 4.40639 * 5.51409 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47364 * 16.82792 * 3 2 1 27 27 H 1.09001 * 109.47010 * 256.82994 * 3 2 1 28 28 H 0.96998 * 120.00206 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46685 * 60.00417 * 15 13 4 30 30 H 1.08994 * 109.47129 * 300.00064 * 15 13 4 31 31 H 1.09009 * 109.47304 * 59.99770 * 18 16 15 32 32 H 1.08999 * 109.47726 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.47623 * 300.00124 * 18 16 15 34 34 H 1.07999 * 120.78924 * 0.27158 * 20 19 16 35 35 H 1.08000 * 120.42282 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.62125 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.61267 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0083 -0.9449 5 6 3.4810 0.6415 -2.2196 6 1 4.1240 1.2786 -2.8087 7 6 3.0057 -0.5500 -2.7534 8 7 1.9249 -1.1080 -2.2559 9 14 3.9028 -1.3587 -4.1785 10 1 5.0815 -0.5363 -4.5519 11 1 4.3528 -2.7149 -3.7743 12 1 2.9869 -1.4674 -5.3423 13 6 3.2415 2.2957 -0.5613 14 8 3.6450 3.1300 -1.3438 15 6 2.8593 2.6990 0.8396 16 6 3.0736 4.2039 1.0134 17 1 4.1014 4.4570 0.7533 18 6 2.1135 4.9650 0.0971 19 6 2.8094 4.5866 2.4468 20 6 3.8099 5.1615 3.2159 21 6 3.5234 5.4921 4.5314 22 6 2.2589 5.2389 5.0294 23 7 1.3318 4.6907 4.2687 24 6 1.5690 4.3634 3.0133 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9829 -0.2975 27 1 3.0092 0.2350 1.0007 28 1 1.5928 -1.9396 -2.6288 29 1 3.4790 2.1584 1.5550 30 1 1.8104 2.4592 1.0133 31 1 1.0856 4.7119 0.3571 32 1 2.2658 6.0372 0.2212 33 1 2.3045 4.6882 -0.9397 34 1 4.7891 5.3474 2.8000 35 1 4.2786 5.9409 5.1594 36 1 2.0277 5.4930 6.0532 37 1 0.7843 3.9164 2.4210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:20 Heat of formation + Delta-G solvation = 58.950073 kcal Electronic energy + Delta-G solvation = -20428.812595 eV Core-core repulsion = 17366.092139 eV Total energy + Delta-G solvation = -3062.720456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27684 -38.75582 -35.75640 -34.63176 -32.23703 -32.05523 -31.21733 -29.90465 -27.61561 -26.34528 -24.57778 -23.80396 -23.35596 -20.60422 -18.72892 -17.85648 -17.17727 -16.63797 -16.31639 -16.06483 -14.89043 -14.64764 -14.44771 -14.19547 -13.91415 -13.52435 -13.31857 -13.01358 -12.74887 -12.46145 -12.37142 -12.15520 -11.70279 -11.43241 -11.05484 -10.94458 -10.84222 -10.48828 -10.46916 -10.30525 -9.74538 -9.39062 -9.32788 -9.25259 -8.91006 -8.87071 -8.33911 -7.84844 -6.33302 -3.87296 1.15184 1.32081 3.12799 3.25267 3.31518 3.67131 3.84564 3.92728 4.05010 4.17969 4.45697 4.74521 4.83517 4.98966 5.03585 5.10071 5.16425 5.31647 5.46283 5.49864 5.60456 5.70909 5.89210 5.95472 6.06978 6.10830 6.15726 6.21424 6.34152 6.43280 6.64921 6.70097 6.74681 6.88716 7.02121 7.56104 8.01070 8.06319 8.41930 8.81487 9.13610 9.35715 9.91189 10.67307 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.004683 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.019027 B = 5977.256593 C = 6469.985108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.441 5.441 5 C -0.316 4.316 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.860 5.860 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.580 6.580 15 C -0.126 4.126 16 C -0.029 4.029 17 H 0.086 0.914 18 C -0.146 4.146 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.173 4.173 22 C 0.082 3.918 23 N -0.485 5.485 24 C 0.103 3.897 25 H 0.199 0.801 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 6.672 11.638 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.116 4.116 3 C 0.109 3.891 4 N -0.159 5.159 5 C -0.444 4.444 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.744 3.256 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.243 3.757 14 O -0.464 6.464 15 C -0.166 4.166 16 C -0.048 4.048 17 H 0.104 0.896 18 C -0.203 4.203 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.193 4.193 22 C -0.074 4.074 23 N -0.193 5.193 24 C -0.054 4.054 25 H 0.216 0.784 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.540 6.735 11.551 13.381 hybrid contribution 0.795 -0.556 -1.016 1.405 sum 1.335 6.179 10.535 12.286 Atomic orbital electron populations 1.24266 0.95359 1.03190 1.04899 1.23129 0.94318 0.97862 0.96282 1.18203 0.84377 0.95421 0.91106 1.43710 1.55991 1.04746 1.11448 1.19664 1.28342 1.05505 0.90847 0.87884 1.25293 0.94997 0.98144 0.98800 1.70098 1.17937 1.19318 1.42409 0.86007 0.79793 0.79011 0.80751 1.19228 1.20655 1.20920 1.19995 0.84099 0.82422 0.89219 1.90479 1.51113 1.49484 1.55372 1.21661 1.02710 0.95354 0.96872 1.19808 1.01756 0.94560 0.88681 0.89606 1.21939 0.97647 0.98557 1.02168 1.21122 0.94737 0.98297 0.97611 1.21568 0.99279 0.95782 0.93600 1.22106 0.98559 1.02218 0.96427 1.22697 0.89545 0.95664 0.99542 1.67692 1.34905 1.10699 1.05992 1.22688 0.95776 0.95965 0.90961 0.78415 0.87689 0.91993 0.92235 0.90598 0.89963 0.93426 0.93594 0.89238 0.84885 0.85105 0.83196 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.28 19.25 29.55 0.57 -4.71 16 2 C -0.11 -2.51 10.75 -37.12 -0.40 -2.91 16 3 C 0.23 5.02 4.91 -6.83 -0.03 4.99 16 4 N -0.44 -10.79 2.60 -117.93 -0.31 -11.09 16 5 C -0.32 -8.51 9.28 -14.93 -0.14 -8.65 16 6 H 0.10 2.92 7.42 -52.49 -0.39 2.53 16 7 C 0.03 0.83 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.36 9.59 55.50 0.53 -21.83 16 9 Si 0.92 20.20 29.61 -169.99 -5.03 15.16 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.45 10.43 7.28 -10.99 -0.08 10.35 16 14 O -0.58 -14.93 13.63 5.55 0.08 -14.86 16 15 C -0.13 -2.22 3.53 -27.88 -0.10 -2.32 16 16 C -0.03 -0.45 2.22 -91.78 -0.20 -0.65 16 17 H 0.09 1.40 7.74 -51.93 -0.40 1.00 16 18 C -0.15 -2.37 8.75 37.15 0.33 -2.05 16 19 C -0.12 -1.59 4.79 -104.48 -0.50 -2.09 16 20 C -0.08 -0.91 9.81 -39.28 -0.39 -1.29 16 21 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 22 C 0.08 0.94 11.18 -17.54 -0.20 0.74 16 23 N -0.48 -6.80 10.36 -13.25 -0.14 -6.94 16 24 C 0.10 1.45 9.95 -17.55 -0.17 1.28 16 25 H 0.20 3.32 7.80 -54.08 -0.42 2.90 16 26 H 0.11 2.40 6.60 -51.93 -0.34 2.05 16 27 H 0.06 1.12 6.70 -51.93 -0.35 0.77 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 30 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 31 H 0.05 0.72 7.41 -51.92 -0.38 0.34 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.75 5.95 -51.93 -0.31 1.44 16 34 H 0.13 1.35 8.00 -52.49 -0.42 0.93 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.15 2.09 7.19 -52.48 -0.38 1.71 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -30.63 315.51 -6.46 -37.09 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.54 Total: 6.49 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.80 Total: -8.77 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.09 Total: -39.86 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.63 -6.46 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.035 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds