Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47136 * 136.83285 * 3 2 1 5 5 C 1.37109 * 119.99877 * 263.92452 * 4 3 2 6 6 H 1.08000 * 120.00142 * 199.75398 * 5 4 3 7 7 C 1.38943 * 119.99774 * 19.75328 * 5 4 3 8 8 N 1.31417 * 120.00164 * 21.74992 * 7 5 4 9 9 Si 1.86807 * 120.00081 * 201.74732 * 7 5 4 10 10 H 1.48497 * 109.46748 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46830 * 120.00154 * 9 7 5 12 12 H 1.48504 * 109.46947 * 240.00176 * 9 7 5 13 13 C 1.34772 * 120.00439 * 83.92437 * 4 3 2 14 14 O 1.21292 * 120.00311 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99663 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46690 * 180.02562 * 15 13 4 17 17 H 1.08999 * 109.47039 * 304.99734 * 16 15 13 18 18 C 1.52991 * 109.47572 * 65.00175 * 16 15 13 19 19 C 1.50699 * 109.46690 * 185.00521 * 16 15 13 20 20 C 1.38671 * 120.42240 * 119.72043 * 19 16 15 21 21 C 1.38626 * 118.42594 * 180.27192 * 20 19 16 22 22 C 1.38235 * 119.15981 * 0.02562 * 21 20 19 23 23 N 1.31859 * 120.75966 * 359.97438 * 22 21 20 24 24 C 1.31885 * 121.72635 * 0.02562 * 23 22 21 25 25 H 4.40639 * 5.51409 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47364 * 16.82792 * 3 2 1 27 27 H 1.09001 * 109.47010 * 256.82994 * 3 2 1 28 28 H 0.96998 * 120.00206 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46685 * 60.00417 * 15 13 4 30 30 H 1.08994 * 109.47129 * 300.00064 * 15 13 4 31 31 H 1.09009 * 109.47304 * 59.99770 * 18 16 15 32 32 H 1.08999 * 109.47726 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.47623 * 300.00124 * 18 16 15 34 34 H 1.07999 * 120.78924 * 0.27158 * 20 19 16 35 35 H 1.08000 * 120.42282 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.62125 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.61267 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0083 -0.9449 5 6 3.4810 0.6415 -2.2196 6 1 4.1240 1.2786 -2.8087 7 6 3.0057 -0.5500 -2.7534 8 7 1.9249 -1.1080 -2.2559 9 14 3.9028 -1.3587 -4.1785 10 1 5.0815 -0.5363 -4.5519 11 1 4.3528 -2.7149 -3.7743 12 1 2.9869 -1.4674 -5.3423 13 6 3.2415 2.2957 -0.5613 14 8 3.6450 3.1300 -1.3438 15 6 2.8593 2.6990 0.8396 16 6 3.0736 4.2039 1.0134 17 1 4.1014 4.4570 0.7533 18 6 2.1135 4.9650 0.0971 19 6 2.8094 4.5866 2.4468 20 6 3.8099 5.1615 3.2159 21 6 3.5234 5.4921 4.5314 22 6 2.2589 5.2389 5.0294 23 7 1.3318 4.6907 4.2687 24 6 1.5690 4.3634 3.0133 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9829 -0.2975 27 1 3.0092 0.2350 1.0007 28 1 1.5928 -1.9396 -2.6288 29 1 3.4790 2.1584 1.5550 30 1 1.8104 2.4592 1.0133 31 1 1.0856 4.7119 0.3571 32 1 2.2658 6.0372 0.2212 33 1 2.3045 4.6882 -0.9397 34 1 4.7891 5.3474 2.8000 35 1 4.2786 5.9409 5.1594 36 1 2.0277 5.4930 6.0532 37 1 0.7843 3.9164 2.4210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = 41.758426 kcal Electronic energy + Delta-G solvation = -20429.558080 eV Core-core repulsion = 17366.092139 eV Total energy + Delta-G solvation = -3063.465941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33667 -40.42478 -37.37263 -36.14314 -34.00084 -33.08219 -32.99480 -31.01641 -29.14384 -28.06195 -26.29671 -24.96444 -24.34968 -21.92217 -20.33750 -19.63832 -18.46527 -18.16632 -17.73478 -17.26359 -16.49952 -16.17836 -15.95760 -15.69004 -15.02059 -14.89993 -14.68325 -14.18639 -14.08624 -13.91030 -13.86196 -13.65088 -13.48844 -12.90501 -12.79806 -12.48691 -12.22105 -12.15095 -12.06451 -11.76852 -11.13481 -11.05669 -10.67834 -10.61402 -10.33597 -10.18739 -9.83706 -9.76307 -8.28960 -5.90412 0.22404 0.39985 1.35919 1.43418 1.56208 1.93068 2.17745 2.34725 2.40551 2.90538 3.07532 3.19103 3.58214 3.79513 3.84600 3.92099 4.10841 4.13263 4.15497 4.27441 4.33133 4.49171 4.65440 4.72689 4.74066 4.86741 4.93137 4.95750 5.02919 5.17659 5.27468 5.40925 5.44006 5.49745 5.55747 5.84546 6.10971 6.48038 7.08186 7.16638 7.19420 7.46955 8.04480 8.69506 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.004683 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.019027 B = 5977.256593 C = 6469.985108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.153 4.153 3 C 0.235 3.765 4 N -0.456 5.456 5 C -0.350 4.350 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.446 3.554 14 O -0.616 6.616 15 C -0.111 4.111 16 C -0.019 4.019 17 H 0.077 0.923 18 C -0.141 4.141 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.162 4.162 22 C 0.079 3.921 23 N -0.509 5.509 24 C 0.090 3.910 25 H 0.231 0.769 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 6.909 13.671 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.154 4.154 3 C 0.113 3.887 4 N -0.174 5.174 5 C -0.477 4.477 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.509 5.509 9 Si 0.804 3.196 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.209 1.209 13 C 0.236 3.764 14 O -0.503 6.503 15 C -0.151 4.151 16 C -0.039 4.039 17 H 0.096 0.904 18 C -0.198 4.198 19 C -0.128 4.128 20 C -0.106 4.106 21 C -0.181 4.181 22 C -0.078 4.078 23 N -0.218 5.218 24 C -0.066 4.066 25 H 0.247 0.753 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.198 0.802 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.613 6.957 13.603 15.291 hybrid contribution 0.736 -0.563 -1.584 1.835 sum 1.349 6.394 12.019 13.681 Atomic orbital electron populations 1.25106 0.96328 1.01587 1.03390 1.23422 0.94973 0.99336 0.97692 1.18242 0.84630 0.93920 0.91952 1.43916 1.56346 1.05908 1.11230 1.19555 1.29452 1.06376 0.92353 0.90721 1.25941 0.95309 0.97873 1.00926 1.70186 1.18255 1.19327 1.43171 0.85092 0.78331 0.78331 0.77834 1.19825 1.19144 1.20854 1.20913 0.82727 0.81703 0.91032 1.90453 1.52382 1.50393 1.57030 1.21584 1.03040 0.97076 0.93439 1.19637 1.00964 0.92966 0.90284 0.90437 1.21843 0.98299 0.99723 0.99966 1.20837 0.95494 1.00108 0.96317 1.21853 0.99481 0.95013 0.94222 1.22473 0.98920 1.00783 0.95953 1.23301 0.89553 0.94344 1.00563 1.67704 1.36228 1.11810 1.06080 1.22635 0.95855 0.96747 0.91386 0.75256 0.89422 0.88614 0.91997 0.88605 0.89552 0.92792 0.91967 0.93071 0.83277 0.81472 0.80216 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.73 19.25 74.32 1.43 -8.30 16 2 C -0.15 -6.66 10.75 31.13 0.33 -6.32 16 3 C 0.24 10.22 4.91 84.57 0.42 10.63 16 4 N -0.46 -22.88 2.60 -645.42 -1.68 -24.55 16 5 C -0.35 -19.49 9.28 84.04 0.78 -18.71 16 6 H 0.07 4.48 7.42 -2.91 -0.02 4.46 16 7 C 0.00 0.15 4.83 84.92 0.41 0.56 16 8 N -0.87 -45.52 9.59 21.66 0.21 -45.32 16 9 Si 0.98 41.95 29.61 68.60 2.03 43.98 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.45 21.06 7.28 87.66 0.64 21.70 16 14 O -0.62 -33.16 13.63 -3.07 -0.04 -33.20 16 15 C -0.11 -3.91 3.53 29.85 0.11 -3.81 16 16 C -0.02 -0.59 2.22 -11.54 -0.03 -0.62 16 17 H 0.08 2.53 7.74 -2.39 -0.02 2.51 16 18 C -0.14 -4.65 8.75 71.98 0.63 -4.02 16 19 C -0.13 -3.26 4.79 -19.77 -0.09 -3.35 16 20 C -0.08 -1.67 9.81 22.47 0.22 -1.45 16 21 C -0.16 -2.74 10.11 22.36 0.23 -2.52 16 22 C 0.08 1.55 11.18 84.69 0.95 2.49 16 23 N -0.51 -13.30 10.36 -195.84 -2.03 -15.33 16 24 C 0.09 2.42 9.95 84.67 0.84 3.26 16 25 H 0.23 7.14 7.80 -4.41 -0.03 7.11 16 26 H 0.09 4.06 6.60 -2.39 -0.02 4.05 16 27 H 0.10 3.38 6.70 -2.39 -0.02 3.36 16 28 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 29 H 0.10 2.96 7.42 -2.39 -0.02 2.95 16 30 H 0.09 2.98 6.95 -2.39 -0.02 2.97 16 31 H 0.05 1.66 7.41 -2.38 -0.02 1.64 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.09 5.95 -2.39 -0.01 2.07 16 34 H 0.15 2.59 8.00 -2.91 -0.02 2.57 16 35 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.15 3.97 7.19 -2.91 -0.02 3.95 16 Total: -1.00 -67.93 315.51 6.42 -61.51 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 1.07 Total: 23.36 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 6.86 Total: -10.45 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.50 Total: -85.20 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.04 Total: -33.20 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.93 6.42 -61.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.271 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds