Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47063 * 39.31555 * 3 2 1 5 5 C 1.37099 * 119.99851 * 263.92717 * 4 3 2 6 6 H 1.08000 * 119.99802 * 199.76443 * 5 4 3 7 7 C 1.38949 * 120.00292 * 19.75379 * 5 4 3 8 8 N 1.31414 * 119.99529 * 21.75196 * 7 5 4 9 9 Si 1.86794 * 120.00211 * 201.74935 * 7 5 4 10 10 H 1.48499 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47342 * 120.00785 * 9 7 5 12 12 H 1.48508 * 109.47111 * 240.00282 * 9 7 5 13 13 C 1.34770 * 120.00230 * 83.92890 * 4 3 2 14 14 O 1.21292 * 120.00420 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99595 * 359.97438 * 13 4 3 16 16 C 1.53006 * 109.47104 * 179.97438 * 15 13 4 17 17 H 1.09004 * 109.46608 * 54.99910 * 16 15 13 18 18 C 1.52997 * 109.47222 * 295.00454 * 16 15 13 19 19 C 1.50700 * 109.47451 * 175.00066 * 16 15 13 20 20 C 1.38671 * 120.41865 * 240.00454 * 19 16 15 21 21 C 1.38631 * 118.42081 * 179.97438 * 20 19 16 22 22 C 1.38222 * 119.15719 * 359.97438 * 21 20 19 23 23 N 1.31855 * 120.77180 * 0.02562 * 22 21 20 24 24 C 1.31892 * 121.71902 * 359.70366 * 23 22 21 25 25 H 4.40636 * 5.51397 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.46530 * 279.31504 * 3 2 1 27 27 H 1.08991 * 109.46869 * 159.31927 * 3 2 1 28 28 H 0.97003 * 119.99841 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47334 * 60.00342 * 15 13 4 30 30 H 1.09001 * 109.47571 * 299.99801 * 15 13 4 31 31 H 1.09003 * 109.47394 * 59.99492 * 18 16 15 32 32 H 1.09004 * 109.47159 * 179.97438 * 18 16 15 33 33 H 1.09002 * 109.46978 * 299.99824 * 18 16 15 34 34 H 1.07997 * 120.79267 * 359.97438 * 20 19 16 35 35 H 1.07997 * 120.42328 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.61613 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.61800 * 180.31537 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0677 -0.8751 5 6 3.4823 -2.2832 -0.3446 6 1 4.1260 -2.9502 -0.8989 7 6 3.0066 -2.6570 0.9062 8 7 1.9253 -2.0913 1.3938 9 14 3.9039 -3.9635 1.8947 10 1 5.0833 -4.4407 1.1288 11 1 4.3529 -3.3853 3.1867 12 1 2.9885 -5.1037 2.1542 13 6 3.2430 -0.8558 -2.2017 14 8 3.6482 -1.7401 -2.9262 15 6 2.8606 0.4802 -2.7848 16 6 3.0767 0.4563 -4.2993 17 1 2.5273 -0.3800 -4.7315 18 6 4.5684 0.2958 -4.5991 19 6 2.5800 1.7470 -4.8981 20 6 1.5698 1.7372 -5.8480 21 6 1.1442 2.9485 -6.3711 22 6 1.7365 4.1174 -5.9310 23 7 2.6949 4.0887 -5.0259 24 6 3.1211 2.9554 -4.5029 25 1 -1.0497 -0.0002 -0.0004 26 1 3.0094 -0.1655 1.0142 27 1 3.0089 0.9622 -0.3629 28 1 1.5929 -2.3524 2.2669 29 1 3.4796 1.2605 -2.3421 30 1 1.8114 0.6834 -2.5704 31 1 4.9278 -0.6377 -4.1660 32 1 4.7224 0.2784 -5.6781 33 1 5.1179 1.1321 -4.1668 34 1 1.1251 0.8082 -6.1727 35 1 0.3594 2.9786 -7.1123 36 1 1.4109 5.0651 -6.3338 37 1 3.9048 2.9719 -3.7600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = 58.839296 kcal Electronic energy + Delta-G solvation = -20404.639566 eV Core-core repulsion = 17341.914307 eV Total energy + Delta-G solvation = -3062.725259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27689 -38.75907 -35.76398 -34.63414 -32.23450 -32.06246 -31.22214 -29.91003 -27.62243 -26.35665 -24.57838 -23.81122 -23.35813 -20.61032 -18.75212 -17.84890 -17.18062 -16.62583 -16.37928 -16.00125 -14.92737 -14.58648 -14.53276 -14.16687 -13.88589 -13.52737 -13.40259 -13.00696 -12.76002 -12.50306 -12.30918 -12.14877 -11.62111 -11.56368 -11.06361 -10.95725 -10.80486 -10.60166 -10.44742 -10.26285 -9.73887 -9.38125 -9.35742 -9.23596 -8.93356 -8.86537 -8.35242 -7.84517 -6.33619 -3.87494 1.15348 1.32568 3.12777 3.25262 3.31538 3.66544 3.85312 3.91559 4.04109 4.17756 4.45101 4.74106 4.83518 5.00580 5.02604 5.10259 5.15813 5.31125 5.46059 5.49826 5.59516 5.70537 5.90414 5.93213 6.00952 6.08805 6.11662 6.29892 6.32886 6.41746 6.64425 6.69855 6.73706 6.83912 7.01268 7.55908 8.00188 8.06130 8.41718 8.80433 9.13406 9.35488 9.90982 10.67104 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.004703 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.757536 B = 5952.136489 C = 6488.837298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.113 4.113 3 C 0.232 3.768 4 N -0.441 5.441 5 C -0.316 4.316 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.580 6.580 15 C -0.125 4.125 16 C -0.029 4.029 17 H 0.086 0.914 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.172 4.172 22 C 0.082 3.918 23 N -0.485 5.485 24 C 0.101 3.899 25 H 0.198 0.802 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.267 0.733 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 9.849 -8.477 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.115 4.115 3 C 0.109 3.891 4 N -0.159 5.159 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.498 5.498 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.243 3.757 14 O -0.464 6.464 15 C -0.166 4.166 16 C -0.049 4.049 17 H 0.104 0.896 18 C -0.203 4.203 19 C -0.117 4.117 20 C -0.102 4.102 21 C -0.192 4.192 22 C -0.074 4.074 23 N -0.193 5.193 24 C -0.055 4.055 25 H 0.215 0.785 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.563 10.174 -8.365 13.183 hybrid contribution -0.648 -1.430 0.487 1.644 sum -1.210 8.743 -7.878 11.831 Atomic orbital electron populations 1.24253 0.95367 1.04432 1.03841 1.23157 0.94353 0.96583 0.97398 1.18211 0.84301 0.89098 0.97504 1.43708 1.55970 1.11947 1.04270 1.19668 1.28291 0.95259 1.01130 0.87860 1.25297 0.94999 0.98553 0.98414 1.70100 1.17935 1.43166 1.18619 0.86001 0.79790 0.80277 0.79461 1.19205 1.20636 1.20944 1.19994 0.84084 0.89379 0.82262 1.90479 1.51051 1.46350 1.58560 1.21652 1.02570 0.97619 0.94715 1.19819 0.97907 0.92822 0.94340 0.89608 1.21947 0.93958 1.03707 1.00674 1.21115 0.96441 0.97174 0.96956 1.21582 0.95076 0.98586 0.94921 1.22108 1.01714 0.93594 1.01792 1.22682 0.92771 0.98087 0.93905 1.67682 1.12055 1.30236 1.09363 1.22649 0.98178 0.87108 0.97613 0.78468 0.87649 0.91915 0.92238 0.90402 0.90172 0.89238 0.93568 0.93443 0.84888 0.85086 0.83186 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.38 19.25 29.55 0.57 -4.81 16 2 C -0.11 -2.51 10.75 -37.12 -0.40 -2.91 16 3 C 0.23 5.02 4.91 -6.83 -0.03 4.99 16 4 N -0.44 -10.78 2.60 -117.93 -0.31 -11.09 16 5 C -0.32 -8.50 9.28 -14.93 -0.14 -8.64 16 6 H 0.10 2.93 7.42 -52.49 -0.39 2.54 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.73 16 8 N -0.86 -22.42 9.59 55.50 0.53 -21.89 16 9 Si 0.92 20.20 29.60 -169.99 -5.03 15.17 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.45 10.43 7.28 -10.99 -0.08 10.35 16 14 O -0.58 -14.93 13.63 5.55 0.08 -14.85 16 15 C -0.13 -2.21 3.52 -27.88 -0.10 -2.31 16 16 C -0.03 -0.46 2.22 -91.77 -0.20 -0.67 16 17 H 0.09 1.46 7.74 -51.93 -0.40 1.06 16 18 C -0.15 -2.24 8.75 37.16 0.33 -1.92 16 19 C -0.11 -1.59 4.79 -104.48 -0.50 -2.09 16 20 C -0.08 -0.93 9.81 -39.28 -0.39 -1.31 16 21 C -0.17 -1.84 10.11 -39.44 -0.40 -2.24 16 22 C 0.08 0.95 11.18 -17.55 -0.20 0.75 16 23 N -0.49 -6.70 10.36 -13.25 -0.14 -6.84 16 24 C 0.10 1.39 9.95 -17.55 -0.17 1.21 16 25 H 0.20 3.35 7.80 -54.10 -0.42 2.93 16 26 H 0.11 2.40 6.60 -51.93 -0.34 2.06 16 27 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 28 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.08 1.21 6.85 -51.93 -0.36 0.86 16 30 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 31 H 0.09 1.65 5.95 -51.93 -0.31 1.34 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 34 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.15 1.91 7.19 -52.49 -0.38 1.53 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -30.78 315.50 -6.46 -37.23 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.54 Total: 6.37 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.80 Total: -8.85 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.09 Total: -39.82 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.78 -6.46 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.072 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds