Wall clock time and date at job start Mon Mar 30 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47063 * 39.31555 * 3 2 1 5 5 C 1.37099 * 119.99851 * 263.92717 * 4 3 2 6 6 H 1.08000 * 119.99802 * 199.76443 * 5 4 3 7 7 C 1.38949 * 120.00292 * 19.75379 * 5 4 3 8 8 N 1.31414 * 119.99529 * 21.75196 * 7 5 4 9 9 Si 1.86794 * 120.00211 * 201.74935 * 7 5 4 10 10 H 1.48499 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47342 * 120.00785 * 9 7 5 12 12 H 1.48508 * 109.47111 * 240.00282 * 9 7 5 13 13 C 1.34770 * 120.00230 * 83.92890 * 4 3 2 14 14 O 1.21292 * 120.00420 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99595 * 359.97438 * 13 4 3 16 16 C 1.53006 * 109.47104 * 179.97438 * 15 13 4 17 17 H 1.09004 * 109.46608 * 54.99910 * 16 15 13 18 18 C 1.52997 * 109.47222 * 295.00454 * 16 15 13 19 19 C 1.50700 * 109.47451 * 175.00066 * 16 15 13 20 20 C 1.38671 * 120.41865 * 240.00454 * 19 16 15 21 21 C 1.38631 * 118.42081 * 179.97438 * 20 19 16 22 22 C 1.38222 * 119.15719 * 359.97438 * 21 20 19 23 23 N 1.31855 * 120.77180 * 0.02562 * 22 21 20 24 24 C 1.31892 * 121.71902 * 359.70366 * 23 22 21 25 25 H 4.40636 * 5.51397 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.46530 * 279.31504 * 3 2 1 27 27 H 1.08991 * 109.46869 * 159.31927 * 3 2 1 28 28 H 0.97003 * 119.99841 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47334 * 60.00342 * 15 13 4 30 30 H 1.09001 * 109.47571 * 299.99801 * 15 13 4 31 31 H 1.09003 * 109.47394 * 59.99492 * 18 16 15 32 32 H 1.09004 * 109.47159 * 179.97438 * 18 16 15 33 33 H 1.09002 * 109.46978 * 299.99824 * 18 16 15 34 34 H 1.07997 * 120.79267 * 359.97438 * 20 19 16 35 35 H 1.07997 * 120.42328 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.61613 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.61800 * 180.31537 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0677 -0.8751 5 6 3.4823 -2.2832 -0.3446 6 1 4.1260 -2.9502 -0.8989 7 6 3.0066 -2.6570 0.9062 8 7 1.9253 -2.0913 1.3938 9 14 3.9039 -3.9635 1.8947 10 1 5.0833 -4.4407 1.1288 11 1 4.3529 -3.3853 3.1867 12 1 2.9885 -5.1037 2.1542 13 6 3.2430 -0.8558 -2.2017 14 8 3.6482 -1.7401 -2.9262 15 6 2.8606 0.4802 -2.7848 16 6 3.0767 0.4563 -4.2993 17 1 2.5273 -0.3800 -4.7315 18 6 4.5684 0.2958 -4.5991 19 6 2.5800 1.7470 -4.8981 20 6 1.5698 1.7372 -5.8480 21 6 1.1442 2.9485 -6.3711 22 6 1.7365 4.1174 -5.9310 23 7 2.6949 4.0887 -5.0259 24 6 3.1211 2.9554 -4.5029 25 1 -1.0497 -0.0002 -0.0004 26 1 3.0094 -0.1655 1.0142 27 1 3.0089 0.9622 -0.3629 28 1 1.5929 -2.3524 2.2669 29 1 3.4796 1.2605 -2.3421 30 1 1.8114 0.6834 -2.5704 31 1 4.9278 -0.6377 -4.1660 32 1 4.7224 0.2784 -5.6781 33 1 5.1179 1.1321 -4.1668 34 1 1.1251 0.8082 -6.1727 35 1 0.3594 2.9786 -7.1123 36 1 1.4109 5.0651 -6.3338 37 1 3.9048 2.9719 -3.7600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:22 Heat of formation + Delta-G solvation = 41.559713 kcal Electronic energy + Delta-G solvation = -20405.388865 eV Core-core repulsion = 17341.914307 eV Total energy + Delta-G solvation = -3063.474558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33595 -40.42614 -37.37505 -36.14039 -34.00608 -33.08848 -33.00388 -31.01722 -29.12198 -28.06978 -26.28665 -24.96154 -24.35879 -21.92174 -20.36019 -19.63544 -18.43000 -18.22007 -17.71819 -17.24715 -16.53165 -16.21001 -15.89491 -15.70464 -15.00907 -14.92251 -14.73915 -14.18991 -14.02941 -13.91675 -13.85243 -13.62867 -13.45427 -12.95605 -12.80629 -12.46745 -12.17422 -12.16281 -12.11631 -11.72824 -11.12035 -11.07106 -10.68273 -10.63408 -10.35184 -10.19528 -9.82499 -9.76558 -8.29334 -5.90563 0.22571 0.38915 1.35942 1.43549 1.56328 1.92727 2.16889 2.33872 2.39473 2.90545 3.07261 3.18912 3.58610 3.78475 3.85039 3.91522 4.10096 4.13839 4.16272 4.23888 4.36633 4.47886 4.65491 4.70673 4.76900 4.86335 4.94062 4.96237 5.05776 5.17526 5.27740 5.41867 5.43427 5.50064 5.56459 5.83858 6.10975 6.47942 7.07474 7.15059 7.19230 7.46814 8.04386 8.69297 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.004703 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.757536 B = 5952.136489 C = 6488.837298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.152 4.152 3 C 0.235 3.765 4 N -0.456 5.456 5 C -0.350 4.350 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.283 1.283 13 C 0.446 3.554 14 O -0.616 6.616 15 C -0.111 4.111 16 C -0.020 4.020 17 H 0.066 0.934 18 C -0.140 4.140 19 C -0.126 4.126 20 C -0.085 4.085 21 C -0.163 4.163 22 C 0.080 3.920 23 N -0.507 5.507 24 C 0.092 3.908 25 H 0.230 0.770 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.270 0.730 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 11.502 -8.961 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.153 4.153 3 C 0.112 3.888 4 N -0.174 5.174 5 C -0.477 4.477 6 H 0.093 0.907 7 C -0.201 4.201 8 N -0.510 5.510 9 Si 0.804 3.196 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.209 1.209 13 C 0.236 3.764 14 O -0.503 6.503 15 C -0.151 4.151 16 C -0.040 4.040 17 H 0.085 0.915 18 C -0.197 4.197 19 C -0.128 4.128 20 C -0.110 4.110 21 C -0.183 4.183 22 C -0.077 4.077 23 N -0.216 5.216 24 C -0.064 4.064 25 H 0.247 0.753 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.640 11.850 -8.837 14.873 hybrid contribution -0.394 -1.912 0.560 2.031 sum -2.035 9.937 -8.277 13.092 Atomic orbital electron populations 1.25102 0.96353 1.02942 1.02300 1.23473 0.95043 0.97972 0.98827 1.18263 0.84506 0.89697 0.96333 1.43911 1.56317 1.11922 1.05237 1.19561 1.29378 0.96574 1.02196 0.90694 1.25944 0.95310 1.00324 0.98493 1.70187 1.18260 1.43841 1.18731 0.85088 0.78327 0.77885 0.78262 1.19812 1.19135 1.20871 1.20915 0.82692 0.90979 0.81773 1.90454 1.52302 1.48152 1.59380 1.21574 1.02734 0.94768 0.95981 1.19639 0.97849 0.93592 0.92897 0.91513 1.21850 0.94032 1.02438 1.01403 1.20863 0.97775 0.95925 0.98255 1.21839 0.94657 0.99959 0.94593 1.22449 1.01781 0.92443 1.01607 1.23278 0.91752 0.99780 0.92893 1.67720 1.13218 1.30203 1.10452 1.22727 0.98566 0.87093 0.98053 0.75294 0.89364 0.88400 0.92000 0.88002 0.90109 0.92742 0.92246 0.91774 0.83922 0.81724 0.80183 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.88 19.25 74.32 1.43 -8.45 16 2 C -0.15 -6.62 10.75 31.12 0.33 -6.29 16 3 C 0.23 10.16 4.91 84.57 0.42 10.57 16 4 N -0.46 -22.82 2.60 -645.42 -1.68 -24.50 16 5 C -0.35 -19.45 9.28 84.04 0.78 -18.67 16 6 H 0.08 4.49 7.42 -2.91 -0.02 4.47 16 7 C 0.00 0.14 4.83 84.93 0.41 0.55 16 8 N -0.87 -45.55 9.59 21.66 0.21 -45.34 16 9 Si 0.98 41.93 29.60 68.60 2.03 43.96 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.45 21.04 7.28 87.66 0.64 21.68 16 14 O -0.62 -33.18 13.63 -3.07 -0.04 -33.22 16 15 C -0.11 -3.87 3.52 29.85 0.11 -3.77 16 16 C -0.02 -0.63 2.22 -11.54 -0.03 -0.65 16 17 H 0.07 2.32 7.74 -2.38 -0.02 2.30 16 18 C -0.14 -4.32 8.75 71.98 0.63 -3.69 16 19 C -0.13 -3.30 4.79 -19.77 -0.09 -3.40 16 20 C -0.08 -1.90 9.81 22.47 0.22 -1.68 16 21 C -0.16 -2.94 10.11 22.36 0.23 -2.71 16 22 C 0.08 1.57 11.18 84.69 0.95 2.52 16 23 N -0.51 -12.86 10.36 -195.84 -2.03 -14.89 16 24 C 0.09 2.36 9.95 84.67 0.84 3.20 16 25 H 0.23 7.15 7.80 -4.43 -0.03 7.11 16 26 H 0.09 4.08 6.60 -2.38 -0.02 4.06 16 27 H 0.10 3.41 6.69 -2.39 -0.02 3.40 16 28 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.10 3.05 6.85 -2.39 -0.02 3.03 16 30 H 0.08 2.84 7.49 -2.39 -0.02 2.82 16 31 H 0.05 2.08 5.95 -2.39 -0.01 2.06 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 1.72 7.43 -2.39 -0.02 1.70 16 34 H 0.14 2.84 8.00 -2.91 -0.02 2.82 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.16 3.70 7.19 -2.91 -0.02 3.68 16 Total: -1.00 -67.95 315.50 6.42 -61.53 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.07 Total: 23.25 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 6.86 Total: -10.79 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.50 Total: -84.73 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.04 Total: -33.22 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.95 6.42 -61.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.088 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds