Wall clock time and date at job start Mon Mar 30 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46838 * 191.56737 * 3 2 1 5 5 C 1.52998 * 109.47475 * 311.56385 * 3 2 1 6 6 C 1.52998 * 109.47220 * 185.00286 * 5 3 2 7 7 N 1.46497 * 109.47342 * 71.57212 * 3 2 1 8 8 C 1.34773 * 120.00646 * 84.99784 * 7 3 2 9 9 O 1.21587 * 119.99337 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00492 * 180.02562 * 8 7 3 11 11 C 1.39235 * 120.00338 * 176.69323 * 10 8 7 12 12 C 1.39475 * 119.83759 * 217.51297 * 11 10 8 13 13 C 1.36375 * 120.17312 * 179.75706 * 12 11 10 14 14 C 1.40863 * 119.82328 * 0.51618 * 13 12 11 15 15 C 1.41159 * 120.16130 * 179.71613 * 14 13 12 16 16 H 1.08001 * 120.00040 * 157.94585 * 15 14 13 17 17 C 1.39897 * 120.00161 * 337.95271 * 15 14 13 18 18 N 1.30879 * 119.99786 * 327.60977 * 17 15 14 19 19 Si 1.86798 * 120.00305 * 147.61181 * 17 15 14 20 20 H 1.48501 * 109.47144 * 94.98655 * 19 17 15 21 21 H 1.48496 * 109.47174 * 214.98585 * 19 17 15 22 22 H 1.48505 * 109.46922 * 334.98744 * 19 17 15 23 23 C 1.40864 * 119.67747 * 359.73606 * 14 13 12 24 24 C 1.36376 * 119.82842 * 0.02562 * 23 14 13 25 25 H 4.18743 * 15.03831 * 359.97438 * 4 2 1 26 26 H 1.08998 * 109.46686 * 65.00195 * 5 3 2 27 27 H 1.09005 * 109.47217 * 305.00796 * 5 3 2 28 28 H 1.09004 * 109.46998 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46909 * 60.00255 * 6 5 3 30 30 H 1.08999 * 109.47269 * 299.99992 * 6 5 3 31 31 H 0.97003 * 119.99473 * 264.99168 * 7 3 2 32 32 H 0.97003 * 119.99411 * 356.68635 * 10 8 7 33 33 H 1.08004 * 119.90861 * 0.02562 * 12 11 10 34 34 H 1.08001 * 120.08782 * 180.25104 * 13 12 11 35 35 H 0.96998 * 120.00227 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.08812 * 179.97438 * 23 14 13 37 37 H 1.07996 * 119.91921 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0088 1.0077 0.2061 5 6 3.1565 -0.9561 1.0793 6 6 4.6812 -0.8625 1.1640 7 7 3.1345 -0.4357 -1.3103 8 6 3.2629 0.4558 -2.3129 9 8 2.9727 1.6222 -2.1299 10 7 3.7119 0.0542 -3.5186 11 6 3.7793 0.9603 -4.5736 12 6 3.4679 0.5431 -5.8676 13 6 3.5269 1.4261 -6.9052 14 6 3.9140 2.7597 -6.6691 15 6 3.9833 3.6781 -7.7388 16 1 3.9249 4.7389 -7.5445 17 6 4.1274 3.2143 -9.0508 18 7 4.8015 2.1175 -9.2867 19 14 3.3579 4.1603 -10.4658 20 1 4.3668 5.0767 -11.0553 21 1 2.8902 3.2060 -11.5029 22 1 2.2049 4.9503 -9.9640 23 6 4.2321 3.1723 -5.3603 24 6 4.1638 2.2791 -4.3320 25 1 -1.0500 -0.0011 -0.0007 26 1 2.8686 -1.9764 0.8259 27 1 2.7216 -0.6842 2.0411 28 1 5.0449 -1.5438 1.9333 29 1 4.9690 0.1579 1.4174 30 1 5.1160 -1.1345 0.2022 31 1 3.3657 -1.3664 -1.4563 32 1 3.9881 -0.8662 -3.6512 33 1 3.1751 -0.4808 -6.0475 34 1 3.2815 1.1026 -7.9060 35 1 4.9011 1.7957 -10.1963 36 1 4.5301 4.1931 -5.1718 37 1 4.4078 2.5938 -3.3281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491146275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:27 Heat of formation + Delta-G solvation = 40.421359 kcal Electronic energy + Delta-G solvation = -19651.185890 eV Core-core repulsion = 16587.661969 eV Total energy + Delta-G solvation = -3063.523921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97387 -37.72478 -36.37779 -34.33232 -33.14141 -32.30232 -32.04381 -29.51222 -28.87557 -26.78261 -24.70662 -22.14465 -21.62045 -20.87594 -20.10546 -18.48935 -17.98617 -17.26935 -16.62085 -15.53080 -15.28874 -15.12973 -14.33344 -14.21079 -13.93812 -13.85553 -13.20683 -12.95381 -12.63914 -12.17176 -12.03394 -11.96785 -11.68879 -11.40439 -11.27632 -11.11694 -10.91293 -10.58626 -10.49303 -10.15452 -10.14039 -9.69222 -9.55270 -9.18942 -9.02696 -8.65428 -7.49477 -7.08727 -6.83171 -4.22174 2.49579 2.72096 2.84688 3.06236 3.08067 3.15161 3.20915 3.43213 3.71302 3.92712 4.28240 4.55803 4.70027 4.75801 4.83082 5.09925 5.44152 5.52344 5.68553 5.71699 5.84202 5.94898 6.04268 6.23230 6.46366 6.58296 6.82213 6.88566 7.04974 7.14623 7.31267 7.36234 7.62712 7.64043 7.91604 8.00295 8.07998 8.31396 8.53212 8.60588 8.89063 8.95846 9.16514 10.06736 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.003456 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.502703 B = 8098.882428 C = 8293.671805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C 0.273 3.727 4 H 0.109 0.891 5 C -0.123 4.123 6 C -0.153 4.153 7 N -0.744 5.744 8 C 0.695 3.305 9 O -0.576 6.576 10 N -0.664 5.664 11 C -0.002 4.002 12 C -0.104 4.104 13 C -0.171 4.171 14 C 0.112 3.888 15 C -0.468 4.468 16 H 0.081 0.919 17 C 0.089 3.911 18 N -0.771 5.771 19 Si 0.895 3.105 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.223 4.223 24 C -0.066 4.066 25 H 0.215 0.785 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.390 0.610 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.282 0.718 36 H 0.094 0.906 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -8.913 13.505 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.168 3.832 4 H 0.127 0.873 5 C -0.161 4.161 6 C -0.210 4.210 7 N -0.400 5.400 8 C 0.396 3.604 9 O -0.452 6.452 10 N -0.310 5.310 11 C -0.094 4.094 12 C -0.125 4.125 13 C -0.190 4.190 14 C 0.109 3.891 15 C -0.496 4.496 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.395 5.395 19 Si 0.718 3.282 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.243 4.243 24 C -0.086 4.086 25 H 0.232 0.768 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.223 0.777 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.243 -7.985 13.490 15.836 hybrid contribution -0.378 -0.624 -0.953 1.200 sum -2.621 -8.609 12.537 15.433 Atomic orbital electron populations 1.24918 0.95918 1.01199 0.99286 1.23653 0.94910 1.00050 1.00913 1.17606 0.82829 1.00362 0.82409 0.87336 1.21763 0.96874 0.99326 0.98141 1.21777 0.94600 1.02383 1.02226 1.45158 1.72338 1.11402 1.11110 1.16038 0.78582 0.85137 0.80649 1.90917 1.56405 1.16257 1.81667 1.42036 1.67109 1.13018 1.08821 1.16858 1.16473 0.90553 0.85532 1.20147 1.02194 0.98038 0.92077 1.20598 1.07034 0.94245 0.97166 1.17579 0.87589 0.92064 0.91862 1.19489 1.44710 0.94946 0.90410 0.90077 1.25920 0.92056 0.94619 1.00668 1.69953 1.25669 1.20638 1.23192 0.86531 0.80971 0.80511 0.80172 1.19506 1.19943 1.18121 1.20599 1.11713 0.98591 0.93388 1.20328 0.97947 0.92389 0.97957 0.76781 0.91126 0.90078 0.92321 0.92206 0.92149 0.77224 0.77708 0.89387 0.87521 0.90695 0.88792 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 19.25 29.55 0.57 -1.86 16 2 C -0.19 -2.63 12.84 -37.13 -0.48 -3.11 16 3 C 0.27 3.33 2.41 -70.72 -0.17 3.16 16 4 H 0.11 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.12 -1.00 5.43 -26.73 -0.15 -1.15 16 6 C -0.15 -1.17 9.80 37.16 0.36 -0.80 16 7 N -0.74 -9.70 4.50 -61.45 -0.28 -9.97 16 8 C 0.70 12.72 8.32 -86.92 -0.72 12.00 16 9 O -0.58 -13.11 13.62 5.29 0.07 -13.04 16 10 N -0.66 -12.12 5.30 -14.10 -0.07 -12.20 16 11 C 0.00 -0.04 6.25 -83.57 -0.52 -0.56 16 12 C -0.10 -2.44 9.90 -39.79 -0.39 -2.83 16 13 C -0.17 -4.44 8.74 -39.26 -0.34 -4.78 16 14 C 0.11 3.05 5.57 -106.80 -0.60 2.45 16 15 C -0.47 -12.58 8.94 -37.85 -0.34 -12.91 16 16 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 17 C 0.09 2.22 4.77 -17.34 -0.08 2.14 16 18 N -0.77 -19.69 11.78 55.55 0.65 -19.04 16 19 Si 0.89 18.47 29.66 -169.99 -5.04 13.43 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.22 -5.82 9.74 -39.26 -0.38 -6.20 16 24 C -0.07 -1.64 8.59 -39.79 -0.34 -1.98 16 25 H 0.22 1.90 7.80 -54.09 -0.42 1.47 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 7.75 -51.93 -0.40 0.09 16 31 H 0.39 3.84 8.62 -40.82 -0.35 3.49 16 32 H 0.39 5.59 8.84 -40.82 -0.36 5.23 16 33 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.11 2.81 6.53 -52.49 -0.34 2.46 16 35 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 36 H 0.09 2.34 8.06 -52.49 -0.42 1.91 16 37 H 0.10 2.54 6.45 -52.49 -0.34 2.20 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -31.99 325.30 -8.05 -40.04 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.70 Total: 12.33 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.58 Total: -16.45 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.30 Total: -41.21 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.99 -8.05 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491146275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.463 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds