Wall clock time and date at job start Mon Mar 30 2020 01:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46940 * 45.83498 * 3 2 1 5 5 C 1.52991 * 109.47457 * 165.84028 * 3 2 1 6 6 N 1.46505 * 109.47010 * 285.84365 * 3 2 1 7 7 C 1.46503 * 119.99723 * 299.99463 * 6 3 2 8 8 C 1.34774 * 120.00505 * 119.99782 * 6 3 2 9 9 O 1.21581 * 119.99430 * 0.02562 * 8 6 3 10 10 N 1.34772 * 119.99930 * 179.97438 * 8 6 3 11 11 C 1.39251 * 119.99763 * 185.40128 * 10 8 6 12 12 C 1.39474 * 119.83535 * 212.91811 * 11 10 8 13 13 C 1.36368 * 120.17106 * 179.71412 * 12 11 10 14 14 C 1.40869 * 119.82858 * 0.58635 * 13 12 11 15 15 C 1.41151 * 120.16937 * 179.67409 * 14 13 12 16 16 H 1.08004 * 120.00544 * 156.00736 * 15 14 13 17 17 C 1.39900 * 119.99839 * 336.00819 * 15 14 13 18 18 N 1.30880 * 119.99621 * 340.76145 * 17 15 14 19 19 Si 1.86794 * 120.00133 * 160.76881 * 17 15 14 20 20 H 1.48497 * 109.47104 * 94.72480 * 19 17 15 21 21 H 1.48503 * 109.46940 * 214.72524 * 19 17 15 22 22 H 1.48500 * 109.47333 * 334.72013 * 19 17 15 23 23 C 1.40878 * 119.66923 * 359.68859 * 14 13 12 24 24 C 1.36372 * 119.82846 * 0.02562 * 23 14 13 25 25 H 4.18737 * 15.04054 * 0.02562 * 4 2 1 26 26 H 1.08996 * 109.47493 * 180.02562 * 5 3 2 27 27 H 1.09004 * 109.47212 * 300.00157 * 5 3 2 28 28 H 1.08999 * 109.47478 * 59.99800 * 5 3 2 29 29 H 1.08999 * 109.47009 * 270.00583 * 7 6 3 30 30 H 1.09008 * 109.46857 * 30.00102 * 7 6 3 31 31 H 1.08996 * 109.46824 * 149.99903 * 7 6 3 32 32 H 0.96994 * 120.00118 * 5.40453 * 10 8 6 33 33 H 1.08010 * 119.91526 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.08922 * 180.25359 * 13 12 11 35 35 H 0.97001 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.08246 * 179.97438 * 23 14 13 37 37 H 1.07996 * 119.91467 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7152 -0.7372 5 6 3.1554 1.3994 -0.3528 6 7 3.1345 -0.3762 1.3288 7 6 2.7803 0.4345 2.4965 8 6 3.9098 -1.4686 1.4770 9 8 4.2042 -2.1411 0.5078 10 7 4.3595 -1.8149 2.6994 11 6 5.2507 -2.8759 2.8385 12 6 5.2058 -3.6745 3.9811 13 6 6.0714 -4.7188 4.1218 14 6 7.0208 -4.9824 3.1151 15 6 7.9248 -6.0572 3.2565 16 1 8.3711 -6.5063 2.3815 17 6 8.2426 -6.5409 4.5302 18 7 8.0243 -5.7982 5.5855 19 14 8.9788 -8.2467 4.7246 20 1 10.4593 -8.1439 4.7757 21 1 8.4814 -8.8600 5.9823 22 1 8.5807 -9.0921 3.5705 23 6 7.0639 -4.1678 1.9666 24 6 6.1879 -3.1306 1.8374 25 1 -1.0500 -0.0002 -0.0009 26 1 4.2454 1.3998 -0.3533 27 1 2.7920 1.6798 -1.3415 28 1 2.7918 2.1153 0.3843 29 1 3.5312 1.2112 2.6409 30 1 1.8060 0.8964 2.3361 31 1 2.7398 -0.2010 3.3812 32 1 4.0624 -1.3253 3.4822 33 1 4.4802 -3.4684 4.7542 34 1 6.0327 -5.3389 5.0052 35 1 8.2450 -6.1334 6.4686 36 1 7.7894 -4.3636 1.1908 37 1 6.2199 -2.5050 0.9577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491289122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:29 Heat of formation + Delta-G solvation = 58.244608 kcal Electronic energy + Delta-G solvation = -19883.617264 eV Core-core repulsion = 16820.866218 eV Total energy + Delta-G solvation = -3062.751047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22199 -37.75391 -36.27664 -34.49910 -33.45257 -32.52240 -30.51182 -29.49570 -28.69540 -26.94817 -25.08073 -23.62788 -21.52213 -20.83054 -19.53203 -18.11128 -18.09571 -17.27584 -16.42751 -15.56774 -15.43058 -15.10936 -14.52546 -13.97109 -13.74702 -13.44358 -13.04386 -12.86658 -12.66346 -12.58935 -12.20991 -12.01893 -11.79817 -11.73713 -11.43328 -11.09197 -10.90814 -10.72118 -10.50029 -10.33142 -10.09497 -9.70008 -9.52358 -9.21756 -8.74093 -8.68294 -7.49920 -6.94211 -6.74593 -4.24232 2.29821 2.68291 2.71699 3.08478 3.08989 3.14915 3.16957 3.29772 3.66298 3.95392 4.15942 4.35306 4.65920 4.98154 5.02680 5.11455 5.37033 5.39224 5.55341 5.73301 5.74678 5.81164 5.99336 6.22282 6.41475 6.48547 6.81468 6.86166 7.07226 7.12803 7.29500 7.36436 7.45209 7.64899 7.87823 7.98357 8.08468 8.32078 8.45439 8.63582 8.92268 8.93453 9.10928 10.19113 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.003491 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.791230 B = 8018.164628 C = 8177.172758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.261 3.739 4 H 0.124 0.876 5 C -0.153 4.153 6 N -0.631 5.631 7 C 0.081 3.919 8 C 0.699 3.301 9 O -0.576 6.576 10 N -0.663 5.663 11 C 0.009 3.991 12 C -0.114 4.114 13 C -0.155 4.155 14 C 0.105 3.895 15 C -0.459 4.459 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.215 4.215 24 C -0.076 4.076 25 H 0.217 0.783 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.280 0.720 36 H 0.094 0.906 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 11.937 -3.316 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C 0.157 3.843 4 H 0.141 0.859 5 C -0.211 4.211 6 N -0.370 5.370 7 C -0.062 4.062 8 C 0.401 3.599 9 O -0.453 6.453 10 N -0.309 5.309 11 C -0.083 4.083 12 C -0.135 4.135 13 C -0.174 4.174 14 C 0.102 3.898 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.236 4.236 24 C -0.096 4.096 25 H 0.234 0.766 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.834 11.460 -3.752 15.560 hybrid contribution -0.153 -0.403 0.761 0.875 sum -9.987 11.057 -2.990 15.196 Atomic orbital electron populations 1.24925 0.95832 1.01362 0.99264 1.23516 0.94647 0.99912 1.01026 1.17712 0.82731 0.98249 0.85639 0.85857 1.22086 1.02165 0.94879 1.01998 1.47071 1.54257 1.28111 1.07541 1.21652 1.00958 0.95616 0.88023 1.15893 0.78973 0.80528 0.84514 1.90900 1.62529 1.53420 1.38458 1.42257 1.47416 1.34758 1.06497 1.16976 0.96928 0.94835 0.99565 1.20165 1.00369 0.96604 0.96315 1.20854 0.96392 0.98767 1.01430 1.17644 0.90675 0.90839 0.90600 1.19543 1.22643 1.13769 0.92900 0.90384 1.25913 0.94168 0.98508 0.95535 1.69856 1.36621 1.35581 0.99769 0.86340 0.79432 0.82372 0.78831 1.19612 1.20074 1.18389 1.20649 1.02913 0.98957 1.01035 1.20275 0.93772 0.98370 0.97200 0.76599 0.91050 0.91110 0.92126 0.92496 0.91151 0.91484 0.77354 0.89330 0.86203 0.90939 0.88735 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.19 -2.30 11.81 -37.12 -0.44 -2.74 16 3 C 0.26 3.32 3.10 -70.72 -0.22 3.10 16 4 H 0.12 1.82 6.90 -51.93 -0.36 1.46 16 5 C -0.15 -1.47 9.15 37.15 0.34 -1.13 16 6 N -0.63 -8.89 2.74 -182.92 -0.50 -9.39 16 7 C 0.08 0.82 9.30 59.85 0.56 1.38 16 8 C 0.70 13.08 8.01 -86.93 -0.70 12.38 16 9 O -0.58 -13.04 13.31 5.29 0.07 -12.97 16 10 N -0.66 -12.35 5.19 -14.10 -0.07 -12.43 16 11 C 0.01 0.22 6.29 -83.57 -0.53 -0.31 16 12 C -0.11 -2.67 9.89 -39.80 -0.39 -3.06 16 13 C -0.15 -4.02 8.65 -39.26 -0.34 -4.36 16 14 C 0.11 2.86 5.58 -106.80 -0.60 2.26 16 15 C -0.46 -12.34 9.03 -37.86 -0.34 -12.68 16 16 H 0.08 2.03 7.92 -52.48 -0.42 1.61 16 17 C 0.08 1.92 5.11 -17.34 -0.09 1.83 16 18 N -0.79 -20.35 11.00 55.55 0.61 -19.74 16 19 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.22 -5.58 9.74 -39.26 -0.38 -5.96 16 24 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 25 H 0.22 1.41 7.80 -54.09 -0.42 0.99 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.62 7.27 -51.92 -0.38 0.24 16 31 H 0.07 0.64 6.29 -51.93 -0.33 0.31 16 32 H 0.39 5.90 6.50 -40.82 -0.27 5.64 16 33 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.09 2.32 8.06 -52.48 -0.42 1.90 16 37 H 0.10 2.51 6.38 -52.49 -0.33 2.18 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -31.31 318.37 -7.49 -38.81 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.47 Total: 10.17 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.90 Total: -12.93 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.04 Total: -41.55 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.31 -7.49 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491289122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.052 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds