Wall clock time and date at job start Mon Mar 30 2020 01:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46940 * 45.83498 * 3 2 1 5 5 C 1.52991 * 109.47457 * 165.84028 * 3 2 1 6 6 N 1.46505 * 109.47010 * 285.84365 * 3 2 1 7 7 C 1.46503 * 119.99723 * 299.99463 * 6 3 2 8 8 C 1.34774 * 120.00505 * 119.99782 * 6 3 2 9 9 O 1.21581 * 119.99430 * 0.02562 * 8 6 3 10 10 N 1.34772 * 119.99930 * 179.97438 * 8 6 3 11 11 C 1.39251 * 119.99763 * 185.40128 * 10 8 6 12 12 C 1.39474 * 119.83535 * 212.91811 * 11 10 8 13 13 C 1.36368 * 120.17106 * 179.71412 * 12 11 10 14 14 C 1.40869 * 119.82858 * 0.58635 * 13 12 11 15 15 C 1.41151 * 120.16937 * 179.67409 * 14 13 12 16 16 H 1.08004 * 120.00544 * 156.00736 * 15 14 13 17 17 C 1.39900 * 119.99839 * 336.00819 * 15 14 13 18 18 N 1.30880 * 119.99621 * 340.76145 * 17 15 14 19 19 Si 1.86794 * 120.00133 * 160.76881 * 17 15 14 20 20 H 1.48497 * 109.47104 * 94.72480 * 19 17 15 21 21 H 1.48503 * 109.46940 * 214.72524 * 19 17 15 22 22 H 1.48500 * 109.47333 * 334.72013 * 19 17 15 23 23 C 1.40878 * 119.66923 * 359.68859 * 14 13 12 24 24 C 1.36372 * 119.82846 * 0.02562 * 23 14 13 25 25 H 4.18737 * 15.04054 * 0.02562 * 4 2 1 26 26 H 1.08996 * 109.47493 * 180.02562 * 5 3 2 27 27 H 1.09004 * 109.47212 * 300.00157 * 5 3 2 28 28 H 1.08999 * 109.47478 * 59.99800 * 5 3 2 29 29 H 1.08999 * 109.47009 * 270.00583 * 7 6 3 30 30 H 1.09008 * 109.46857 * 30.00102 * 7 6 3 31 31 H 1.08996 * 109.46824 * 149.99903 * 7 6 3 32 32 H 0.96994 * 120.00118 * 5.40453 * 10 8 6 33 33 H 1.08010 * 119.91526 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.08922 * 180.25359 * 13 12 11 35 35 H 0.97001 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.08246 * 179.97438 * 23 14 13 37 37 H 1.07996 * 119.91467 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.7152 -0.7372 5 6 3.1554 1.3994 -0.3528 6 7 3.1345 -0.3762 1.3288 7 6 2.7803 0.4345 2.4965 8 6 3.9098 -1.4686 1.4770 9 8 4.2042 -2.1411 0.5078 10 7 4.3595 -1.8149 2.6994 11 6 5.2507 -2.8759 2.8385 12 6 5.2058 -3.6745 3.9811 13 6 6.0714 -4.7188 4.1218 14 6 7.0208 -4.9824 3.1151 15 6 7.9248 -6.0572 3.2565 16 1 8.3711 -6.5063 2.3815 17 6 8.2426 -6.5409 4.5302 18 7 8.0243 -5.7982 5.5855 19 14 8.9788 -8.2467 4.7246 20 1 10.4593 -8.1439 4.7757 21 1 8.4814 -8.8600 5.9823 22 1 8.5807 -9.0921 3.5705 23 6 7.0639 -4.1678 1.9666 24 6 6.1879 -3.1306 1.8374 25 1 -1.0500 -0.0002 -0.0009 26 1 4.2454 1.3998 -0.3533 27 1 2.7920 1.6798 -1.3415 28 1 2.7918 2.1153 0.3843 29 1 3.5312 1.2112 2.6409 30 1 1.8060 0.8964 2.3361 31 1 2.7398 -0.2010 3.3812 32 1 4.0624 -1.3253 3.4822 33 1 4.4802 -3.4684 4.7542 34 1 6.0327 -5.3389 5.0052 35 1 8.2450 -6.1334 6.4686 36 1 7.7894 -4.3636 1.1908 37 1 6.2199 -2.5050 0.9577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491289122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:29 Heat of formation + Delta-G solvation = 40.329725 kcal Electronic energy + Delta-G solvation = -19884.394112 eV Core-core repulsion = 16820.866218 eV Total energy + Delta-G solvation = -3063.527894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66418 -39.45828 -37.62207 -36.21310 -35.00651 -33.79551 -31.60994 -31.34186 -30.45655 -27.94110 -26.81049 -24.80225 -23.29870 -22.60751 -21.05338 -19.53439 -19.19266 -19.02744 -17.91701 -17.03987 -16.84379 -16.62364 -15.75619 -15.59241 -15.27047 -14.71850 -14.56337 -14.29497 -14.01044 -13.83422 -13.66690 -13.41213 -13.29784 -13.02567 -12.76785 -12.63245 -12.57161 -12.34601 -11.91108 -11.61813 -11.54245 -11.27740 -11.17817 -10.97192 -10.53401 -9.88405 -9.46222 -8.82642 -8.62247 -6.23525 0.85348 1.15108 1.27281 1.40398 1.47784 1.56046 1.85614 2.11182 2.21320 2.23983 2.76101 3.05917 3.36028 3.75368 4.13948 4.15557 4.22838 4.39023 4.50395 4.59002 4.65792 4.79195 4.86798 4.92953 5.01612 5.11145 5.16223 5.21981 5.29174 5.44855 5.48779 5.64222 5.76073 6.03999 6.09004 6.15142 6.38578 6.62387 6.66345 6.94236 6.97743 7.01498 7.57926 8.33421 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046209 B = 0.003491 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.791230 B = 8018.164628 C = 8177.172758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.236 4.236 3 C 0.256 3.744 4 H 0.093 0.907 5 C -0.143 4.143 6 N -0.622 5.622 7 C 0.073 3.927 8 C 0.695 3.305 9 O -0.622 6.622 10 N -0.656 5.656 11 C 0.024 3.976 12 C -0.112 4.112 13 C -0.172 4.172 14 C 0.075 3.925 15 C -0.498 4.498 16 H 0.072 0.928 17 C 0.039 3.961 18 N -0.819 5.819 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.234 4.234 24 C -0.087 4.087 25 H 0.252 0.748 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.290 0.710 36 H 0.093 0.907 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 13.094 -2.351 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.237 4.237 3 C 0.152 3.848 4 H 0.110 0.890 5 C -0.201 4.201 6 N -0.359 5.359 7 C -0.069 4.069 8 C 0.397 3.603 9 O -0.503 6.503 10 N -0.305 5.305 11 C -0.070 4.070 12 C -0.132 4.132 13 C -0.192 4.192 14 C 0.073 3.927 15 C -0.527 4.527 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.445 5.445 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.187 1.187 22 H -0.186 1.186 23 C -0.254 4.254 24 C -0.107 4.107 25 H 0.268 0.732 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.635 12.700 -2.768 17.445 hybrid contribution 0.229 -0.598 0.407 0.759 sum -11.405 12.102 -2.361 16.796 Atomic orbital electron populations 1.25774 0.96568 0.99117 0.96782 1.23506 0.94853 1.02049 1.03287 1.17762 0.83769 0.99085 0.84149 0.88964 1.22021 1.01559 0.93199 1.03344 1.47116 1.52644 1.26653 1.09449 1.21952 1.02604 0.95725 0.86588 1.16084 0.79307 0.81280 0.83643 1.90872 1.64293 1.55312 1.39815 1.42038 1.46810 1.33998 1.07614 1.17013 0.96376 0.95159 0.98490 1.20415 1.00181 0.95475 0.97133 1.20868 0.97235 0.99965 1.01111 1.17959 0.91659 0.91644 0.91451 1.19758 1.24072 1.15040 0.93873 0.90954 1.26720 0.94223 1.02191 0.94552 1.69878 1.36937 1.37207 1.00447 0.85213 0.78810 0.76859 0.78944 1.18695 1.18665 1.18648 1.20775 1.03715 0.99723 1.01191 1.20368 0.94295 0.98219 0.97810 0.73165 0.91862 0.89640 0.90389 0.90578 0.89237 0.90677 0.75022 0.85953 0.87115 0.89920 0.88847 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 19.25 74.32 1.43 -1.42 16 2 C -0.24 -5.26 11.81 31.12 0.37 -4.89 16 3 C 0.26 6.33 3.10 43.18 0.13 6.47 16 4 H 0.09 2.83 6.90 -2.39 -0.02 2.82 16 5 C -0.14 -2.52 9.15 71.98 0.66 -1.86 16 6 N -0.62 -16.68 2.74 -850.91 -2.33 -19.01 16 7 C 0.07 1.27 9.30 127.77 1.19 2.46 16 8 C 0.69 25.75 8.01 179.06 1.43 27.18 16 9 O -0.62 -28.88 13.31 -3.97 -0.05 -28.93 16 10 N -0.66 -23.69 5.19 -316.79 -1.64 -25.34 16 11 C 0.02 1.08 6.29 38.56 0.24 1.32 16 12 C -0.11 -5.16 9.89 22.13 0.22 -4.95 16 13 C -0.17 -9.12 8.65 22.48 0.19 -8.92 16 14 C 0.08 4.26 5.58 -21.27 -0.12 4.14 16 15 C -0.50 -27.74 9.03 23.39 0.21 -27.53 16 16 H 0.07 3.94 7.92 -2.91 -0.02 3.91 16 17 C 0.04 1.96 5.11 85.24 0.44 2.40 16 18 N -0.82 -42.41 11.00 21.82 0.24 -42.17 16 19 Si 0.98 38.49 29.60 68.60 2.03 40.52 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 C -0.23 -12.66 9.74 22.48 0.22 -12.44 16 24 C -0.09 -4.39 8.57 22.13 0.19 -4.20 16 25 H 0.25 2.15 7.80 -4.42 -0.03 2.11 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.26 7.27 -2.38 -0.02 1.24 16 31 H 0.07 1.19 6.29 -2.39 -0.02 1.17 16 32 H 0.41 11.43 6.50 -92.71 -0.60 10.82 16 33 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 34 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.66 16 36 H 0.09 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.11 6.38 -2.91 -0.02 5.09 16 Total: -1.00 -70.46 318.37 5.53 -64.93 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.48 Total: 32.23 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 6.81 Total: -22.24 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -3.74 Total: -86.52 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.05 Total: -28.93 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -70.46 5.53 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491289122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.261 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds