Wall clock time and date at job start Mon Mar 30 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47311 * 101.21293 * 3 2 1 5 5 C 1.36938 * 119.99807 * 264.35496 * 4 3 2 6 6 H 1.08007 * 120.00032 * 196.60003 * 5 4 3 7 7 C 1.38806 * 120.00416 * 16.59414 * 5 4 3 8 8 N 1.31628 * 119.99791 * 22.38379 * 7 5 4 9 9 Si 1.86802 * 120.00393 * 202.38100 * 7 5 4 10 10 H 1.48497 * 109.47016 * 60.00317 * 9 7 5 11 11 H 1.48500 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47051 * 299.99839 * 9 7 5 13 13 C 1.46503 * 120.00233 * 84.35006 * 4 3 2 14 14 C 1.50696 * 109.46852 * 270.00201 * 13 4 3 15 15 O 1.21279 * 120.00291 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99494 * 179.97438 * 14 13 4 17 17 C 1.46501 * 119.99670 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47171 * 180.02562 * 17 16 14 19 19 C 1.38233 * 119.99923 * 89.99424 * 18 17 16 20 20 C 1.38242 * 119.99622 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00244 * 0.27514 * 21 20 19 23 23 C 1.38233 * 119.99485 * 269.97678 * 18 17 16 24 24 H 4.40635 * 5.51340 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47246 * 341.20808 * 3 2 1 26 26 H 1.09003 * 109.47135 * 221.21571 * 3 2 1 27 27 H 0.96994 * 119.99939 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.46851 * 150.00166 * 13 4 3 29 29 H 1.09002 * 109.46712 * 30.00063 * 13 4 3 30 30 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 31 31 H 1.09001 * 109.47267 * 60.00113 * 17 16 14 32 32 H 1.09002 * 109.47092 * 299.99836 * 17 16 14 33 33 H 1.07994 * 120.00252 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99847 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.99762 * 179.97438 * 21 20 19 36 36 H 1.07993 * 120.00093 * 179.72759 * 22 21 20 37 37 H 1.07996 * 120.00301 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2695 -1.3548 5 6 3.4729 -0.7701 -2.1793 6 1 4.0742 -0.5887 -3.0580 7 6 3.0437 -2.0571 -1.8858 8 7 1.9906 -2.2405 -1.1177 9 14 3.9604 -3.5288 -2.5809 10 1 5.3679 -3.5036 -2.1081 11 1 3.3062 -4.7808 -2.1229 12 1 3.9353 -3.4720 -4.0646 13 6 3.2601 1.6504 -1.8276 14 6 1.9702 2.0777 -2.4792 15 8 1.0375 1.3050 -2.5420 16 7 1.8528 3.3189 -2.9912 17 6 0.5987 3.7345 -3.6242 18 6 0.7281 5.1550 -4.1107 19 6 1.1884 5.4084 -5.3893 20 6 1.3066 6.7114 -5.8357 21 6 0.9641 7.7608 -5.0036 22 6 0.5086 7.5075 -3.7232 23 6 0.3862 6.2044 -3.2784 24 1 -1.0500 0.0002 0.0001 25 1 3.0098 -0.9721 0.3310 26 1 3.0090 0.7739 0.6771 27 1 1.6908 -3.1398 -0.9123 28 1 4.0717 1.7137 -2.5524 29 1 3.4750 2.3053 -0.9832 30 1 2.5987 3.9370 -2.9407 31 1 -0.2128 3.6709 -2.8992 32 1 0.3835 3.0798 -4.4687 33 1 1.4556 4.5885 -6.0394 34 1 1.6659 6.9095 -6.8347 35 1 1.0568 8.7788 -5.3522 36 1 0.2452 8.3275 -3.0717 37 1 0.0267 6.0063 -2.2795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491326984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:25 Heat of formation + Delta-G solvation = 80.833502 kcal Electronic energy + Delta-G solvation = -19962.257876 eV Core-core repulsion = 16900.486357 eV Total energy + Delta-G solvation = -3061.771519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56982 -38.46621 -35.68119 -34.25110 -31.50068 -31.36355 -31.03764 -30.85301 -27.53168 -25.95429 -25.26593 -22.70004 -22.01059 -21.18299 -19.63783 -17.41143 -17.12106 -16.41029 -16.12317 -15.44796 -15.39069 -15.00385 -14.57958 -14.30669 -13.58830 -13.52857 -13.20640 -13.18240 -12.89286 -12.60959 -12.24060 -12.14282 -11.38396 -11.24964 -11.14408 -11.10528 -10.82072 -10.65740 -10.24658 -9.95201 -9.25325 -9.07341 -8.86181 -8.69031 -8.56631 -8.39053 -8.22130 -6.95450 -5.70390 -3.12419 1.14069 1.25282 3.41674 3.47421 3.48804 3.53083 3.68021 4.07320 4.38856 4.58776 4.67345 4.70000 4.74397 4.85429 4.98634 5.32436 5.36099 5.41504 5.66772 5.67369 5.69851 5.88475 5.94152 6.03021 6.11010 6.17755 6.29370 6.31743 6.34736 6.54093 6.76891 6.84048 7.03484 7.29275 7.60148 7.78465 8.16595 8.35261 9.12784 9.24033 9.48341 9.80652 10.24661 11.32029 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.004042 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.832135 B = 6926.251443 C = 7438.822226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.095 4.095 3 C 0.270 3.730 4 N -0.558 5.558 5 C -0.268 4.268 6 H 0.075 0.925 7 C 0.009 3.991 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.129 3.871 14 C 0.464 3.536 15 O -0.495 6.495 16 N -0.747 5.747 17 C 0.160 3.840 18 C -0.096 4.096 19 C -0.103 4.103 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.104 4.104 24 H 0.183 0.817 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.391 0.609 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 18.475 -4.052 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.275 5.275 5 C -0.397 4.397 6 H 0.093 0.907 7 C -0.192 4.192 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.003 4.003 14 C 0.248 3.752 15 O -0.365 6.365 16 N -0.404 5.404 17 C 0.036 3.964 18 C -0.096 4.096 19 C -0.122 4.122 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.122 4.122 24 H 0.201 0.799 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.223 0.777 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.247 17.608 -4.009 18.060 hybrid contribution 0.063 -0.468 -0.722 0.863 sum -0.184 17.140 -4.731 17.782 Atomic orbital electron populations 1.23948 0.95125 1.07152 1.04612 1.23929 0.95003 0.94591 0.96219 1.17879 0.83245 0.99684 0.84727 1.44230 1.72768 0.99597 1.10928 1.19133 1.26420 0.85768 1.08354 0.90723 1.24948 0.96094 0.98171 0.99973 1.70190 1.20988 1.20625 1.40011 0.86384 0.79545 0.82292 0.78616 1.20923 1.21729 1.21073 1.21075 0.93078 0.88556 0.97599 1.23473 0.93160 0.80135 0.78449 1.90762 1.40156 1.51177 1.54413 1.46617 1.15102 1.16024 1.62669 1.20046 0.88730 0.89896 0.97721 1.20071 0.99749 0.95380 0.94441 1.21159 0.98493 0.96979 0.95568 1.21158 1.00418 0.92723 0.99825 1.21166 0.99441 0.99003 0.94306 1.21154 1.00136 0.96672 0.96186 1.21149 0.99198 0.92277 0.99603 0.79923 0.88466 0.94729 0.93568 0.90512 0.91355 0.77662 0.91496 0.91492 0.85831 0.86079 0.86245 0.86087 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.36 18.78 29.55 0.56 -6.80 16 2 C -0.09 -2.48 10.03 -37.12 -0.37 -2.85 16 3 C 0.27 6.58 5.45 -6.83 -0.04 6.55 16 4 N -0.56 -13.84 2.09 -177.95 -0.37 -14.21 16 5 C -0.27 -7.33 9.66 -15.06 -0.15 -7.47 16 6 H 0.07 1.99 7.90 -52.48 -0.41 1.57 16 7 C 0.01 0.24 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -25.88 9.50 55.49 0.53 -25.35 16 9 Si 0.90 21.87 29.61 -169.99 -5.03 16.83 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.13 2.55 6.18 -5.19 -0.03 2.52 16 14 C 0.46 9.60 7.81 -10.99 -0.09 9.51 16 15 O -0.49 -12.98 14.43 5.56 0.08 -12.90 16 16 N -0.75 -11.63 5.55 -61.47 -0.34 -11.97 16 17 C 0.16 2.35 5.80 -5.19 -0.03 2.32 16 18 C -0.10 -1.14 5.25 -104.62 -0.55 -1.69 16 19 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 20 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 24 H 0.18 4.09 7.80 -54.09 -0.42 3.66 16 25 H 0.10 2.55 6.41 -51.93 -0.33 2.22 16 26 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.08 1.37 8.02 -51.93 -0.42 0.96 16 29 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 30 H 0.39 4.93 8.46 -40.82 -0.35 4.58 16 31 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 32 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -34.44 325.15 -7.83 -42.27 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.85 Total: 5.75 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.74 Total: -5.34 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.19 Total: -51.53 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.44 -7.83 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491326984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.106 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds