Wall clock time and date at job start Mon Mar 30 2020 01:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47311 * 101.21293 * 3 2 1 5 5 C 1.36938 * 119.99807 * 264.35496 * 4 3 2 6 6 H 1.08007 * 120.00032 * 196.60003 * 5 4 3 7 7 C 1.38806 * 120.00416 * 16.59414 * 5 4 3 8 8 N 1.31628 * 119.99791 * 22.38379 * 7 5 4 9 9 Si 1.86802 * 120.00393 * 202.38100 * 7 5 4 10 10 H 1.48497 * 109.47016 * 60.00317 * 9 7 5 11 11 H 1.48500 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47051 * 299.99839 * 9 7 5 13 13 C 1.46503 * 120.00233 * 84.35006 * 4 3 2 14 14 C 1.50696 * 109.46852 * 270.00201 * 13 4 3 15 15 O 1.21279 * 120.00291 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99494 * 179.97438 * 14 13 4 17 17 C 1.46501 * 119.99670 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47171 * 180.02562 * 17 16 14 19 19 C 1.38233 * 119.99923 * 89.99424 * 18 17 16 20 20 C 1.38242 * 119.99622 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.00244 * 0.27514 * 21 20 19 23 23 C 1.38233 * 119.99485 * 269.97678 * 18 17 16 24 24 H 4.40635 * 5.51340 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47246 * 341.20808 * 3 2 1 26 26 H 1.09003 * 109.47135 * 221.21571 * 3 2 1 27 27 H 0.96994 * 119.99939 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.46851 * 150.00166 * 13 4 3 29 29 H 1.09002 * 109.46712 * 30.00063 * 13 4 3 30 30 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 31 31 H 1.09001 * 109.47267 * 60.00113 * 17 16 14 32 32 H 1.09002 * 109.47092 * 299.99836 * 17 16 14 33 33 H 1.07994 * 120.00252 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99847 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.99762 * 179.97438 * 21 20 19 36 36 H 1.07993 * 120.00093 * 179.72759 * 22 21 20 37 37 H 1.07996 * 120.00301 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2695 -1.3548 5 6 3.4729 -0.7701 -2.1793 6 1 4.0742 -0.5887 -3.0580 7 6 3.0437 -2.0571 -1.8858 8 7 1.9906 -2.2405 -1.1177 9 14 3.9604 -3.5288 -2.5809 10 1 5.3679 -3.5036 -2.1081 11 1 3.3062 -4.7808 -2.1229 12 1 3.9353 -3.4720 -4.0646 13 6 3.2601 1.6504 -1.8276 14 6 1.9702 2.0777 -2.4792 15 8 1.0375 1.3050 -2.5420 16 7 1.8528 3.3189 -2.9912 17 6 0.5987 3.7345 -3.6242 18 6 0.7281 5.1550 -4.1107 19 6 1.1884 5.4084 -5.3893 20 6 1.3066 6.7114 -5.8357 21 6 0.9641 7.7608 -5.0036 22 6 0.5086 7.5075 -3.7232 23 6 0.3862 6.2044 -3.2784 24 1 -1.0500 0.0002 0.0001 25 1 3.0098 -0.9721 0.3310 26 1 3.0090 0.7739 0.6771 27 1 1.6908 -3.1398 -0.9123 28 1 4.0717 1.7137 -2.5524 29 1 3.4750 2.3053 -0.9832 30 1 2.5987 3.9370 -2.9407 31 1 -0.2128 3.6709 -2.8992 32 1 0.3835 3.0798 -4.4687 33 1 1.4556 4.5885 -6.0394 34 1 1.6659 6.9095 -6.8347 35 1 1.0568 8.7788 -5.3522 36 1 0.2452 8.3275 -3.0717 37 1 0.0267 6.0063 -2.2795 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491326984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:24 Heat of formation + Delta-G solvation = 59.339371 kcal Electronic energy + Delta-G solvation = -19963.189932 eV Core-core repulsion = 16900.486357 eV Total energy + Delta-G solvation = -3062.703574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67819 -39.81073 -37.49235 -35.66068 -33.42830 -33.12259 -32.19366 -31.79257 -29.11320 -27.87449 -26.62561 -23.77003 -23.46228 -22.17119 -21.21177 -19.36141 -18.28824 -18.22398 -17.33781 -17.06010 -16.52072 -16.38944 -15.81235 -15.78224 -15.35490 -14.93209 -14.83628 -14.28870 -14.01170 -13.83774 -13.62951 -13.42406 -13.28381 -13.11793 -12.64490 -12.43056 -12.24751 -11.98938 -11.93021 -11.90075 -10.94837 -10.66141 -10.54590 -10.21483 -9.90050 -9.81534 -9.74220 -8.91027 -7.78491 -5.21325 0.33076 0.49309 1.49648 1.51254 1.58403 2.05829 2.38122 2.50303 2.60184 2.69939 2.99394 3.35370 3.71484 3.84915 3.93486 4.15659 4.17497 4.29631 4.35324 4.37147 4.61363 4.65802 4.74877 4.78059 4.79293 4.95883 5.06568 5.16354 5.33030 5.54995 5.61520 5.64686 5.66231 5.68573 5.72520 6.09275 6.27687 6.83176 7.11375 7.51051 7.64896 7.86402 8.24079 9.22382 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.004042 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.832135 B = 6926.251443 C = 7438.822226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.112 4.112 3 C 0.268 3.732 4 N -0.573 5.573 5 C -0.271 4.271 6 H 0.078 0.922 7 C -0.047 4.047 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.301 1.301 12 H -0.285 1.285 13 C 0.124 3.876 14 C 0.465 3.535 15 O -0.558 6.558 16 N -0.724 5.724 17 C 0.167 3.833 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.113 4.113 24 H 0.203 0.797 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.243 0.757 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 21.296 -4.864 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.114 4.114 3 C 0.143 3.857 4 N -0.291 5.291 5 C -0.401 4.401 6 H 0.096 0.904 7 C -0.244 4.244 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.211 1.211 13 C -0.007 4.007 14 C 0.250 3.750 15 O -0.433 6.433 16 N -0.380 5.380 17 C 0.043 3.957 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.131 4.131 24 H 0.220 0.780 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.245 0.755 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.101 20.521 -4.844 21.114 hybrid contribution -0.340 -1.123 -0.539 1.291 sum 0.761 19.398 -5.384 20.146 Atomic orbital electron populations 1.24614 0.96166 1.07158 1.04671 1.24540 0.95995 0.94643 0.96268 1.17945 0.82428 0.99793 0.85561 1.44327 1.72835 1.00991 1.10929 1.19475 1.25611 0.86807 1.08159 0.90378 1.25663 0.96952 1.00629 1.01112 1.70376 1.22689 1.20076 1.42203 0.85395 0.78803 0.78821 0.77628 1.19465 1.22791 1.21141 1.21337 0.92952 0.86800 0.99594 1.23410 0.92601 0.80865 0.78118 1.90750 1.42116 1.53306 1.57174 1.46249 1.16115 1.14790 1.60851 1.19934 0.87564 0.91749 0.96475 1.19795 1.02084 0.93670 0.95406 1.21244 0.98878 0.98014 0.95158 1.21448 0.99810 0.92021 1.00980 1.21562 0.97766 1.00284 0.93822 1.21457 0.99357 0.96506 0.96868 1.21246 0.99419 0.92825 0.99642 0.78016 0.90885 0.90877 0.94721 0.88280 0.87555 0.75503 0.93016 0.93310 0.86009 0.83866 0.83391 0.83736 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.92 18.78 74.32 1.40 -14.52 16 2 C -0.11 -5.92 10.03 31.12 0.31 -5.61 16 3 C 0.27 13.06 5.45 84.57 0.46 13.52 16 4 N -0.57 -28.07 2.09 -716.91 -1.50 -29.57 16 5 C -0.27 -14.78 9.66 84.03 0.81 -13.97 16 6 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 7 C -0.05 -2.66 4.85 84.86 0.41 -2.25 16 8 N -0.91 -55.12 9.50 21.65 0.21 -54.92 16 9 Si 0.96 45.69 29.61 68.60 2.03 47.72 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 13 C 0.12 4.65 6.18 85.63 0.53 5.18 16 14 C 0.47 18.98 7.81 87.66 0.68 19.66 16 15 O -0.56 -29.82 14.43 -3.03 -0.04 -29.87 16 16 N -0.72 -21.85 5.55 -466.77 -2.59 -24.44 16 17 C 0.17 4.94 5.80 85.63 0.50 5.43 16 18 C -0.11 -2.48 5.25 -19.87 -0.10 -2.59 16 19 C -0.11 -2.32 9.70 22.27 0.22 -2.10 16 20 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 21 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 22 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 23 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 24 H 0.20 9.18 7.80 -4.42 -0.03 9.14 16 25 H 0.07 3.90 6.41 -2.39 -0.02 3.89 16 26 H 0.07 2.92 7.97 -2.39 -0.02 2.90 16 27 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.10 3.28 8.02 -2.39 -0.02 3.26 16 29 H 0.11 3.18 7.95 -2.39 -0.02 3.16 16 30 H 0.41 9.45 8.46 -92.71 -0.78 8.67 16 31 H 0.05 1.69 8.09 -2.39 -0.02 1.67 16 32 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.22 325.15 4.49 -71.74 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.28 Total: 23.43 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.10 Total: -4.09 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.88 Total: -108.93 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.22 4.49 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491326984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.076 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds