Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09012 * 109.46941 * 225.71891 * 3 2 1 5 5 C 1.53003 * 109.47323 * 105.72840 * 3 2 1 6 6 N 1.46497 * 109.47488 * 345.72127 * 3 2 1 7 7 C 1.46498 * 120.00012 * 60.00399 * 6 3 2 8 8 C 1.34775 * 119.99918 * 240.00120 * 6 3 2 9 9 O 1.21588 * 120.00192 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99866 * 180.02562 * 8 6 3 11 11 C 1.39955 * 119.99845 * 174.82836 * 10 8 6 12 12 C 1.39295 * 119.94383 * 146.36694 * 11 10 8 13 13 C 1.38488 * 120.42831 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32234 * 0.03112 * 13 12 11 15 15 C 1.40745 * 119.88538 * 359.97438 * 14 13 12 16 16 C 1.41407 * 120.21483 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00076 * 151.78405 * 16 15 14 18 18 C 1.39934 * 119.99700 * 331.79512 * 16 15 14 19 19 N 1.30830 * 119.99983 * 348.98436 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 168.98524 * 18 16 15 21 21 H 1.48496 * 109.47044 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47030 * 119.99777 * 20 18 16 23 23 H 1.48497 * 109.46976 * 239.99717 * 20 18 16 24 24 C 1.38233 * 119.94941 * 326.09570 * 11 10 8 25 25 H 4.18746 * 15.03974 * 359.97438 * 4 2 1 26 26 H 1.09003 * 109.46246 * 299.99673 * 5 3 2 27 27 H 1.08999 * 109.47198 * 179.97438 * 5 3 2 28 28 H 1.08993 * 109.47375 * 59.99112 * 5 3 2 29 29 H 1.09000 * 109.47440 * 89.99545 * 7 6 3 30 30 H 1.09003 * 109.46946 * 209.99868 * 7 6 3 31 31 H 1.09001 * 109.46791 * 329.99704 * 7 6 3 32 32 H 0.97001 * 120.00017 * 354.83007 * 10 8 6 33 33 H 1.07997 * 119.78463 * 359.97438 * 12 11 10 34 34 H 1.08001 * 119.83962 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.06269 * 179.97438 * 14 13 12 36 36 H 0.96999 * 119.99480 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.15889 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7184 0.7358 5 6 3.1559 0.3919 -1.3885 6 7 3.1350 -1.3376 0.3406 7 6 2.7817 -2.4830 -0.5017 8 6 3.9099 -1.5151 1.4290 9 8 4.2028 -0.5646 2.1283 10 7 4.3603 -2.7462 1.7421 11 6 5.2518 -2.9152 2.8076 12 6 5.1977 -4.0712 3.5828 13 6 6.0754 -4.2490 4.6392 14 6 7.0116 -3.2838 4.9351 15 6 7.0780 -2.1105 4.1606 16 6 8.0364 -1.1143 4.4587 17 1 8.4104 -0.4729 3.6745 18 6 8.5002 -0.9598 5.7698 19 7 7.9004 -1.5801 6.7533 20 14 9.9759 0.1321 6.1159 21 1 10.4699 0.7148 4.8425 22 1 9.5775 1.2247 7.0392 23 1 11.0537 -0.6759 6.7410 24 6 6.1884 -1.9372 3.0854 25 1 -1.0500 -0.0002 -0.0009 26 1 2.7929 -0.3257 -2.1242 27 1 4.2459 0.3928 -1.3884 28 1 2.7920 1.3876 -1.6419 29 1 3.5331 -2.6058 -1.2818 30 1 2.7416 -3.3847 0.1094 31 1 1.8076 -2.3105 -0.9594 32 1 4.0664 -3.5152 1.2289 33 1 4.4665 -4.8337 3.3587 34 1 6.0253 -5.1492 5.2338 35 1 7.6937 -3.4266 5.7601 36 1 8.2218 -1.4727 7.6621 37 1 6.2337 -1.0424 2.4824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491338487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = 58.411285 kcal Electronic energy + Delta-G solvation = -20082.659260 eV Core-core repulsion = 17019.915441 eV Total energy + Delta-G solvation = -3062.743819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24062 -37.68862 -36.22339 -34.49020 -33.39767 -32.57345 -30.47817 -29.75131 -27.88720 -26.88568 -25.24117 -23.89514 -21.42994 -20.85333 -19.50849 -18.24470 -18.09425 -17.26311 -16.00406 -15.62546 -15.30238 -14.70669 -14.56022 -14.41687 -13.73148 -13.44659 -13.07320 -12.89101 -12.79540 -12.54652 -12.25052 -12.03411 -11.72456 -11.64002 -11.26720 -11.06400 -10.70961 -10.58253 -10.44298 -10.30878 -10.06678 -9.70020 -9.52104 -9.16307 -8.86393 -8.71831 -7.35469 -6.81280 -6.60265 -4.28441 2.29295 2.72079 2.79083 2.94569 3.14360 3.20563 3.24836 3.26974 3.68262 4.02758 4.16852 4.28157 4.74122 4.97365 5.03512 5.14124 5.36202 5.41832 5.54059 5.76532 5.77578 5.82713 6.02313 6.27153 6.43758 6.44242 6.82292 6.83610 7.09955 7.15772 7.29144 7.36514 7.47250 7.72132 7.83856 8.04571 8.16550 8.30289 8.42304 8.73169 8.94167 9.03090 9.07486 10.33006 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.004440 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.537000 B = 6305.119644 C = 7027.612337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.189 4.189 3 C 0.260 3.740 4 H 0.125 0.875 5 C -0.153 4.153 6 N -0.630 5.630 7 C 0.081 3.919 8 C 0.701 3.299 9 O -0.560 6.560 10 N -0.679 5.679 11 C 0.165 3.835 12 C -0.260 4.260 13 C -0.093 4.093 14 C -0.169 4.169 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.802 5.802 20 Si 0.911 3.089 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.206 4.206 25 H 0.217 0.783 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 -0.957 -13.118 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C 0.156 3.844 4 H 0.143 0.857 5 C -0.211 4.211 6 N -0.369 5.369 7 C -0.063 4.063 8 C 0.403 3.597 9 O -0.434 6.434 10 N -0.326 5.326 11 C 0.073 3.927 12 C -0.282 4.282 13 C -0.113 4.113 14 C -0.189 4.189 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.428 5.428 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.228 4.228 25 H 0.234 0.766 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.230 0.770 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.996 -0.265 -12.369 15.297 hybrid contribution -0.017 -0.027 0.008 0.033 sum -9.013 -0.293 -12.361 15.301 Atomic orbital electron populations 1.24921 0.95820 0.99205 1.01410 1.23501 0.94624 1.01053 0.99893 1.17738 0.82744 0.85127 0.98792 0.85733 1.22087 1.02247 1.01891 0.94890 1.47088 1.54185 1.07981 1.27632 1.21660 1.01056 0.88496 0.95078 1.15891 0.78926 0.84197 0.80656 1.90989 1.61505 1.39799 1.51157 1.42732 1.48215 1.07093 1.34574 1.17257 0.90319 0.96582 0.88545 1.20017 1.06714 0.99423 1.02006 1.20459 0.96499 0.98124 0.96175 1.21398 1.01070 0.93383 1.03010 1.17513 0.89854 0.91462 0.89574 1.19576 1.20070 1.15031 0.94069 0.90544 1.25876 0.96848 0.95603 0.95968 1.69818 1.35866 1.36505 1.00615 0.86226 0.81082 0.79900 0.79261 1.18503 1.20043 1.19866 1.21005 0.97651 0.99533 1.04625 0.76584 0.92144 0.90967 0.91050 0.92433 0.91536 0.91071 0.77038 0.89419 0.89042 0.86095 0.91147 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.19 -2.37 11.81 -37.13 -0.44 -2.81 16 3 C 0.26 3.45 3.10 -70.72 -0.22 3.23 16 4 H 0.13 1.94 6.90 -51.92 -0.36 1.58 16 5 C -0.15 -1.54 9.15 37.16 0.34 -1.20 16 6 N -0.63 -9.10 2.74 -182.92 -0.50 -9.60 16 7 C 0.08 0.82 9.30 59.85 0.56 1.37 16 8 C 0.70 13.59 8.01 -86.92 -0.70 12.89 16 9 O -0.56 -13.46 13.38 5.29 0.07 -13.38 16 10 N -0.68 -12.78 5.22 -14.27 -0.07 -12.86 16 11 C 0.17 3.86 6.26 -83.76 -0.52 3.33 16 12 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 13 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 14 C -0.17 -4.51 8.66 -38.84 -0.34 -4.85 16 15 C 0.12 3.34 5.55 -106.85 -0.59 2.74 16 16 C -0.46 -12.79 9.06 -37.74 -0.34 -13.13 16 17 H 0.08 2.08 7.87 -52.49 -0.41 1.67 16 18 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 19 N -0.80 -21.60 10.81 55.55 0.60 -21.00 16 20 Si 0.91 19.54 29.57 -169.99 -5.03 14.52 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 25 H 0.22 1.47 7.80 -54.09 -0.42 1.05 16 26 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.62 6.29 -51.93 -0.33 0.29 16 31 H 0.07 0.63 7.27 -51.93 -0.38 0.25 16 32 H 0.39 5.81 6.51 -40.82 -0.27 5.55 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 36 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.11 2.96 6.44 -52.49 -0.34 2.62 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.70 318.61 -7.49 -40.19 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.47 Total: 10.09 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.89 Total: -12.76 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.03 Total: -43.45 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.70 -7.49 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491338487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.605 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds