Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09012 * 109.46941 * 225.71891 * 3 2 1 5 5 C 1.53003 * 109.47323 * 105.72840 * 3 2 1 6 6 N 1.46497 * 109.47488 * 345.72127 * 3 2 1 7 7 C 1.46498 * 120.00012 * 60.00399 * 6 3 2 8 8 C 1.34775 * 119.99918 * 240.00120 * 6 3 2 9 9 O 1.21588 * 120.00192 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99866 * 180.02562 * 8 6 3 11 11 C 1.39955 * 119.99845 * 174.82836 * 10 8 6 12 12 C 1.39295 * 119.94383 * 146.36694 * 11 10 8 13 13 C 1.38488 * 120.42831 * 179.97438 * 12 11 10 14 14 C 1.37679 * 120.32234 * 0.03112 * 13 12 11 15 15 C 1.40745 * 119.88538 * 359.97438 * 14 13 12 16 16 C 1.41407 * 120.21483 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00076 * 151.78405 * 16 15 14 18 18 C 1.39934 * 119.99700 * 331.79512 * 16 15 14 19 19 N 1.30830 * 119.99983 * 348.98436 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 168.98524 * 18 16 15 21 21 H 1.48496 * 109.47044 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47030 * 119.99777 * 20 18 16 23 23 H 1.48497 * 109.46976 * 239.99717 * 20 18 16 24 24 C 1.38233 * 119.94941 * 326.09570 * 11 10 8 25 25 H 4.18746 * 15.03974 * 359.97438 * 4 2 1 26 26 H 1.09003 * 109.46246 * 299.99673 * 5 3 2 27 27 H 1.08999 * 109.47198 * 179.97438 * 5 3 2 28 28 H 1.08993 * 109.47375 * 59.99112 * 5 3 2 29 29 H 1.09000 * 109.47440 * 89.99545 * 7 6 3 30 30 H 1.09003 * 109.46946 * 209.99868 * 7 6 3 31 31 H 1.09001 * 109.46791 * 329.99704 * 7 6 3 32 32 H 0.97001 * 120.00017 * 354.83007 * 10 8 6 33 33 H 1.07997 * 119.78463 * 359.97438 * 12 11 10 34 34 H 1.08001 * 119.83962 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.06269 * 179.97438 * 14 13 12 36 36 H 0.96999 * 119.99480 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.15889 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7184 0.7358 5 6 3.1559 0.3919 -1.3885 6 7 3.1350 -1.3376 0.3406 7 6 2.7817 -2.4830 -0.5017 8 6 3.9099 -1.5151 1.4290 9 8 4.2028 -0.5646 2.1283 10 7 4.3603 -2.7462 1.7421 11 6 5.2518 -2.9152 2.8076 12 6 5.1977 -4.0712 3.5828 13 6 6.0754 -4.2490 4.6392 14 6 7.0116 -3.2838 4.9351 15 6 7.0780 -2.1105 4.1606 16 6 8.0364 -1.1143 4.4587 17 1 8.4104 -0.4729 3.6745 18 6 8.5002 -0.9598 5.7698 19 7 7.9004 -1.5801 6.7533 20 14 9.9759 0.1321 6.1159 21 1 10.4699 0.7148 4.8425 22 1 9.5775 1.2247 7.0392 23 1 11.0537 -0.6759 6.7410 24 6 6.1884 -1.9372 3.0854 25 1 -1.0500 -0.0002 -0.0009 26 1 2.7929 -0.3257 -2.1242 27 1 4.2459 0.3928 -1.3884 28 1 2.7920 1.3876 -1.6419 29 1 3.5331 -2.6058 -1.2818 30 1 2.7416 -3.3847 0.1094 31 1 1.8076 -2.3105 -0.9594 32 1 4.0664 -3.5152 1.2289 33 1 4.4665 -4.8337 3.3587 34 1 6.0253 -5.1492 5.2338 35 1 7.6937 -3.4266 5.7601 36 1 8.2218 -1.4727 7.6621 37 1 6.2337 -1.0424 2.4824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491338487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = 38.560421 kcal Electronic energy + Delta-G solvation = -20083.520059 eV Core-core repulsion = 17019.915441 eV Total energy + Delta-G solvation = -3063.604617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71819 -39.38962 -37.62180 -36.25287 -35.04165 -33.85206 -31.73478 -31.47042 -29.61457 -27.89632 -27.24143 -25.02883 -23.09015 -22.72428 -21.08162 -19.83828 -19.10372 -18.89168 -17.47184 -17.23662 -16.77149 -16.42557 -16.26394 -15.63176 -15.25164 -14.78673 -14.67846 -14.42891 -13.95329 -13.84934 -13.57395 -13.43455 -13.13739 -12.99647 -12.82153 -12.60193 -12.54166 -12.20045 -11.97144 -11.64175 -11.56769 -11.30797 -11.18714 -11.00991 -10.71509 -9.91943 -9.34902 -8.68030 -8.55683 -6.37132 0.92192 1.01487 1.23049 1.36838 1.49047 1.52636 1.83993 2.07212 2.17126 2.23272 2.77366 2.97483 3.33676 3.74988 4.11479 4.13152 4.20441 4.47203 4.57592 4.63266 4.63711 4.77439 4.84845 4.98317 5.05503 5.12154 5.13909 5.16171 5.20812 5.34085 5.46567 5.69327 5.82378 6.00715 6.10433 6.14212 6.38242 6.60824 6.70725 6.89980 6.96364 7.02622 7.50756 8.39041 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.004440 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.537000 B = 6305.119644 C = 7027.612337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.237 4.237 3 C 0.255 3.745 4 H 0.088 0.912 5 C -0.143 4.143 6 N -0.620 5.620 7 C 0.072 3.928 8 C 0.695 3.305 9 O -0.617 6.617 10 N -0.667 5.667 11 C 0.171 3.829 12 C -0.248 4.248 13 C -0.091 4.091 14 C -0.193 4.193 15 C 0.088 3.912 16 C -0.501 4.501 17 H 0.064 0.936 18 C 0.032 3.968 19 N -0.832 5.832 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.233 4.233 25 H 0.254 0.746 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.287 0.713 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 -2.276 -14.443 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.238 4.238 3 C 0.151 3.849 4 H 0.106 0.894 5 C -0.201 4.201 6 N -0.357 5.357 7 C -0.070 4.070 8 C 0.397 3.603 9 O -0.496 6.496 10 N -0.316 5.316 11 C 0.078 3.922 12 C -0.269 4.269 13 C -0.110 4.110 14 C -0.213 4.213 15 C 0.086 3.914 16 C -0.532 4.532 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.255 4.255 25 H 0.270 0.730 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.859 -1.631 -13.771 17.613 hybrid contribution 0.319 0.323 0.306 0.547 sum -10.540 -1.308 -13.465 17.150 Atomic orbital electron populations 1.25787 0.96525 0.96570 0.98984 1.23445 0.94755 1.03460 1.02188 1.17755 0.83956 0.83739 0.99436 0.89424 1.22021 1.01472 1.03264 0.93318 1.47134 1.52481 1.09868 1.26170 1.21995 1.02766 0.87083 0.95112 1.16142 0.79299 0.83438 0.81412 1.90957 1.63644 1.41500 1.53474 1.42475 1.47298 1.08057 1.33808 1.17330 0.89696 0.95891 0.89317 1.20447 1.06435 0.99567 1.00442 1.20841 0.95283 0.98352 0.96516 1.21363 1.02600 0.94167 1.03216 1.17850 0.90624 0.92327 0.90643 1.19784 1.22082 1.16215 0.95089 0.91730 1.26732 0.99440 0.96926 0.94994 1.69865 1.37172 1.37675 1.01210 0.85112 0.77248 0.78009 0.78986 1.18616 1.19189 1.18106 1.20949 0.99377 1.00086 1.05045 0.72983 0.90056 0.92052 0.89633 0.90436 0.90370 0.89056 0.74363 0.85026 0.85702 0.87528 0.90251 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 19.25 74.32 1.43 -1.47 16 2 C -0.24 -5.57 11.81 31.12 0.37 -5.20 16 3 C 0.25 6.77 3.10 43.19 0.13 6.91 16 4 H 0.09 2.95 6.90 -2.38 -0.02 2.94 16 5 C -0.14 -2.73 9.15 71.98 0.66 -2.08 16 6 N -0.62 -17.44 2.74 -850.89 -2.33 -19.77 16 7 C 0.07 1.25 9.30 127.77 1.19 2.44 16 8 C 0.70 27.32 8.01 179.05 1.43 28.75 16 9 O -0.62 -31.37 13.38 -3.99 -0.05 -31.43 16 10 N -0.67 -24.53 5.22 -317.32 -1.66 -26.18 16 11 C 0.17 8.01 6.26 38.10 0.24 8.25 16 12 C -0.25 -10.63 9.97 22.58 0.23 -10.40 16 13 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 14 C -0.19 -10.63 8.66 22.75 0.20 -10.44 16 15 C 0.09 5.21 5.55 -21.30 -0.12 5.09 16 16 C -0.50 -29.81 9.06 23.46 0.21 -29.59 16 17 H 0.06 3.80 7.87 -2.91 -0.02 3.78 16 18 C 0.03 1.75 5.25 85.25 0.45 2.20 16 19 N -0.83 -46.28 10.81 21.82 0.24 -46.04 16 20 Si 0.99 41.25 29.57 68.60 2.03 43.28 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 24 C -0.23 -12.99 8.39 22.85 0.19 -12.80 16 25 H 0.25 2.27 7.80 -4.42 -0.03 2.24 16 26 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.18 6.29 -2.39 -0.02 1.16 16 31 H 0.09 1.27 7.27 -2.39 -0.02 1.25 16 32 H 0.42 11.19 6.51 -92.71 -0.60 10.58 16 33 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.11 6.07 6.18 -2.91 -0.02 6.05 16 36 H 0.29 14.30 8.30 -92.71 -0.77 13.54 16 37 H 0.08 4.99 6.44 -2.91 -0.02 4.97 16 Total: -1.00 -76.75 318.61 5.54 -71.21 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.48 Total: 31.29 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 6.83 Total: -22.35 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -3.75 Total: -92.00 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.43 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.75 5.54 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491338487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.775 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds