Wall clock time and date at job start Mon Mar 30 2020 01:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47007 * 73.92750 * 3 2 1 5 5 C 1.34777 * 119.99777 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00305 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99960 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47375 * 179.97438 * 7 5 4 9 9 N 1.46494 * 109.47223 * 180.02562 * 8 7 5 10 10 C 1.39688 * 120.00203 * 180.02562 * 9 8 7 11 11 C 1.39337 * 119.94697 * 359.97369 * 10 9 8 12 12 C 1.38486 * 120.42167 * 180.02562 * 11 10 9 13 13 C 1.37681 * 120.32339 * 359.97438 * 12 11 10 14 14 C 1.40752 * 119.89949 * 0.04507 * 13 12 11 15 15 C 1.41405 * 120.21104 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99991 * 24.35696 * 15 14 13 17 17 C 1.39935 * 119.99607 * 204.36141 * 15 14 13 18 18 N 1.30827 * 120.00201 * 17.83180 * 17 15 14 19 19 Si 1.86796 * 119.99610 * 197.83202 * 17 15 14 20 20 H 1.48501 * 109.47197 * 60.00065 * 19 17 15 21 21 H 1.48497 * 109.47271 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47562 * 299.99846 * 19 17 15 23 23 C 1.38282 * 119.95529 * 180.02562 * 10 9 8 24 24 H 4.40639 * 5.51446 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47501 * 313.92950 * 3 2 1 26 26 H 1.09000 * 109.47256 * 193.92255 * 3 2 1 27 27 H 0.96998 * 120.00023 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.46973 * 59.99644 * 7 5 4 29 29 H 1.08997 * 109.47585 * 300.00115 * 7 5 4 30 30 H 1.08998 * 109.46693 * 60.00129 * 8 7 5 31 31 H 1.09005 * 109.47024 * 300.00360 * 8 7 5 32 32 H 0.96998 * 119.99993 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.78946 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.83404 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.05321 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99955 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.15732 * 359.69223 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3815 -1.3273 5 6 4.4595 -0.4496 -1.5638 6 8 5.2475 -0.1941 -0.6780 7 6 4.9621 -0.8433 -2.9289 8 6 6.4921 -0.8425 -2.9290 9 7 6.9805 -1.2246 -4.2562 10 6 8.3539 -1.2951 -4.5014 11 6 9.2583 -1.0012 -3.4830 12 6 10.6219 -1.0674 -3.7154 13 6 11.0990 -1.4253 -4.9563 14 6 10.1975 -1.7246 -5.9950 15 6 10.6802 -2.0923 -7.2722 16 1 11.6655 -2.5228 -7.3737 17 6 9.8813 -1.8984 -8.4046 18 7 8.8616 -1.0803 -8.3535 19 14 10.2708 -2.8076 -9.9892 20 1 10.2037 -4.2716 -9.7492 21 1 9.2822 -2.4316 -11.0315 22 1 11.6357 -2.4430 -10.4465 23 6 8.8139 -1.6554 -5.7547 24 1 -1.0500 0.0002 -0.0001 25 1 3.0097 -0.7121 0.7401 26 1 3.0089 0.9983 0.2473 27 1 2.5042 -0.5863 -2.0356 28 1 4.5987 -0.1306 -3.6693 29 1 4.5989 -1.8408 -3.1761 30 1 6.8557 -1.5550 -2.1885 31 1 6.8549 0.1553 -2.6820 32 1 6.3503 -1.4294 -4.9645 33 1 8.8936 -0.7200 -2.5062 34 1 11.3144 -0.8381 -2.9190 35 1 12.1633 -1.4751 -5.1329 36 1 8.3081 -0.9456 -9.1385 37 1 8.1138 -1.8874 -6.5436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491419149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:07 Heat of formation + Delta-G solvation = 12.779847 kcal Electronic energy + Delta-G solvation = -19004.599912 eV Core-core repulsion = 15939.877365 eV Total energy + Delta-G solvation = -3064.722547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92110 -39.58291 -36.96214 -36.43642 -35.20214 -33.66386 -32.45306 -31.33384 -29.32952 -27.70811 -27.12127 -24.41740 -22.81566 -21.68650 -21.47205 -19.62703 -19.08863 -17.91888 -17.63470 -17.04123 -16.93739 -16.49101 -16.35378 -15.85090 -15.68269 -14.91164 -14.56969 -14.47392 -14.31252 -14.12030 -14.02152 -13.50705 -13.11573 -12.81283 -12.72878 -12.53880 -12.28899 -12.06738 -11.85084 -11.54275 -11.49564 -11.30915 -11.04923 -10.96583 -10.50267 -10.17987 -9.24829 -8.60054 -7.92256 -6.30001 1.10308 1.33619 1.37732 1.40974 1.51908 1.52332 1.61525 1.81327 2.25400 2.36793 2.82485 2.96395 3.33473 3.70432 3.86819 4.01930 4.13011 4.47554 4.47647 4.53335 4.59426 4.79434 4.92841 4.93198 4.98471 4.99959 5.22226 5.26065 5.30838 5.45320 5.61453 5.96864 6.10927 6.22477 6.25001 6.41520 6.55501 6.58184 6.93948 7.04627 7.07523 7.13355 7.27712 8.40503 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.003010 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.494451 B = 9299.857578 C =10180.900225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.249 4.249 3 C 0.229 3.771 4 N -0.717 5.717 5 C 0.524 3.476 6 O -0.578 6.578 7 C -0.138 4.138 8 C 0.153 3.847 9 N -0.752 5.752 10 C 0.219 3.781 11 C -0.306 4.306 12 C -0.064 4.064 13 C -0.284 4.284 14 C 0.107 3.893 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.038 3.962 18 N -0.820 5.820 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.256 4.256 24 H 0.254 0.746 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.418 0.582 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.398 0.602 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.286 0.714 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 0.498 8.642 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.249 4.249 3 C 0.107 3.893 4 N -0.370 5.370 5 C 0.311 3.689 6 O -0.457 6.457 7 C -0.178 4.178 8 C 0.028 3.972 9 N -0.386 5.386 10 C 0.118 3.882 11 C -0.329 4.329 12 C -0.083 4.083 13 C -0.305 4.305 14 C 0.104 3.896 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.280 4.280 24 H 0.270 0.730 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.255 0.745 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.233 0.767 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.020 0.864 9.354 20.322 hybrid contribution -0.198 -0.294 -1.101 1.157 sum -18.219 0.570 8.253 20.009 Atomic orbital electron populations 1.25864 0.96692 0.98453 0.95357 1.22966 0.94448 1.02923 1.04590 1.17997 0.83968 1.01912 0.85437 1.45869 1.06719 1.70320 1.14087 1.20684 0.82036 0.75993 0.90191 1.90736 1.56357 1.50682 1.47963 1.21698 0.95002 1.06430 0.94641 1.20715 0.92915 0.99081 0.84456 1.44369 1.02918 1.78733 1.12549 1.17719 0.83964 0.93395 0.93112 1.20230 0.93027 1.21270 0.98402 1.20638 0.94847 0.96971 0.95858 1.21022 0.97697 1.16169 0.95585 1.17740 0.91927 0.87094 0.92855 1.19768 1.02565 1.38917 0.92024 0.91017 1.26715 0.93634 0.93497 1.03902 1.69910 1.15235 1.27054 1.32385 0.85287 0.79221 0.79314 0.76020 1.18639 1.19008 1.18651 1.20662 0.95863 1.16471 0.94990 0.72971 0.89445 0.89518 0.74478 0.85897 0.85631 0.93725 0.94112 0.76709 0.87805 0.86658 0.89093 0.90318 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 19.25 74.32 1.43 0.01 16 2 C -0.25 -3.46 13.46 31.12 0.42 -3.04 16 3 C 0.23 3.70 6.15 84.57 0.52 4.22 16 4 N -0.72 -11.37 5.54 -472.13 -2.61 -13.99 16 5 C 0.52 11.80 7.83 87.66 0.69 12.49 16 6 O -0.58 -18.40 15.98 -3.01 -0.05 -18.44 16 7 C -0.14 -2.77 5.81 29.85 0.17 -2.60 16 8 C 0.15 4.81 4.20 86.38 0.36 5.17 16 9 N -0.75 -27.93 5.73 -339.58 -1.95 -29.87 16 10 C 0.22 10.48 6.64 38.16 0.25 10.74 16 11 C -0.31 -14.53 9.32 22.59 0.21 -14.32 16 12 C -0.06 -3.10 10.02 22.20 0.22 -2.88 16 13 C -0.28 -15.08 9.79 22.75 0.22 -14.85 16 14 C 0.11 6.09 5.57 -21.31 -0.12 5.97 16 15 C -0.50 -28.26 9.05 23.46 0.21 -28.05 16 16 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 17 C 0.04 1.93 5.14 85.25 0.44 2.37 16 18 N -0.82 -43.25 10.95 21.82 0.24 -43.01 16 19 Si 0.98 38.83 29.59 68.60 2.03 40.87 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.26 -13.82 8.53 22.86 0.19 -13.62 16 24 H 0.25 0.40 7.80 -4.42 -0.03 0.36 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.42 4.28 8.45 -92.71 -0.78 3.50 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.53 7.90 -2.39 -0.02 1.51 16 31 H 0.04 1.43 7.90 -2.38 -0.02 1.41 16 32 H 0.40 13.18 8.48 -92.71 -0.79 12.39 16 33 H 0.10 4.53 6.70 -2.91 -0.02 4.52 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 35 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 36 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 37 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 Total: -1.00 -71.00 328.15 2.41 -68.59 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.48 Total: 34.25 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 5.23 Total: -38.38 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.32 Total: -86.88 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.87 kcal Total: -71.00 2.41 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491419149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.368 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds